Wall clock time and date at job start Mon Mar 30 2020 05:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 N 1.34554 * 125.97667 * 109.09641 * 3 2 1 5 5 N 1.28655 * 109.77562 * 179.97438 * 4 3 2 6 6 N 1.40142 * 108.89970 * 359.74086 * 5 4 3 7 7 C 1.46503 * 126.56058 * 180.29546 * 6 5 4 8 8 H 1.09000 * 109.47397 * 180.15129 * 7 6 5 9 9 C 1.50699 * 109.47321 * 60.14572 * 7 6 5 10 10 H 1.08003 * 120.00095 * 324.85813 * 9 7 6 11 11 C 1.37872 * 120.00221 * 144.85242 * 9 7 6 12 12 N 1.31510 * 120.00019 * 5.33007 * 11 9 7 13 13 Si 1.86801 * 120.00391 * 185.33033 * 11 9 7 14 14 H 1.48504 * 109.46854 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47479 * 119.99914 * 13 11 9 16 16 H 1.48493 * 109.47159 * 240.00306 * 13 11 9 17 17 C 1.50705 * 109.47179 * 300.14907 * 7 6 5 18 18 C 1.38233 * 119.99849 * 64.92991 * 17 7 6 19 19 C 1.38239 * 119.99550 * 179.79177 * 18 17 7 20 20 C 1.38233 * 120.00370 * 0.43657 * 19 18 17 21 21 C 1.38232 * 119.99681 * 359.81890 * 20 19 18 22 22 C 1.38232 * 119.99709 * 245.20482 * 17 7 6 23 23 C 1.35454 * 106.87759 * 0.42233 * 6 5 4 24 24 N 1.38162 * 126.80200 * 179.85844 * 23 6 5 25 25 H 0.96999 * 120.00441 * 180.02562 * 12 11 9 26 26 H 1.08004 * 120.00420 * 359.97438 * 18 17 7 27 27 H 1.08003 * 119.99652 * 180.27898 * 19 18 17 28 28 H 1.07991 * 120.00159 * 179.83583 * 20 19 18 29 29 H 1.07999 * 119.99957 * 179.97438 * 21 20 19 30 30 H 1.07996 * 120.00226 * 359.97438 * 22 17 7 31 31 H 0.97001 * 120.00291 * 179.70528 * 24 23 6 32 32 H 0.97005 * 120.00338 * 359.43289 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3583 0.3572 -1.0290 5 7 4.5938 0.2409 -0.6896 6 7 4.6600 -0.2110 0.6353 7 6 5.8766 -0.4693 1.4095 8 1 5.6060 -0.8141 2.4075 9 6 6.6821 0.7998 1.5178 10 1 6.7029 1.4981 0.6941 11 6 7.3923 1.0695 2.6683 12 7 7.4526 0.1736 3.6291 13 14 8.2690 2.7076 2.8625 14 1 8.0473 3.5345 1.6491 15 1 7.7319 3.4188 4.0504 16 1 9.7240 2.4720 3.0425 17 6 6.6971 -1.5274 0.7179 18 6 7.2440 -1.2745 -0.5262 19 6 8.0002 -2.2435 -1.1587 20 6 8.2019 -3.4687 -0.5512 21 6 7.6506 -3.7235 0.6905 22 6 6.8980 -2.7529 1.3250 23 6 3.3838 -0.3661 1.0622 24 7 2.9749 -0.7978 2.3093 25 1 7.9519 0.3634 4.4387 26 1 7.0830 -0.3187 -1.0028 27 1 8.4312 -2.0443 -2.1288 28 1 8.7905 -4.2267 -1.0465 29 1 7.8078 -4.6808 1.1650 30 1 6.4673 -2.9519 2.2952 31 1 2.0290 -0.8689 2.5118 32 1 3.6338 -1.0335 2.9811 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713488386.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:54 Heat of formation + Delta-G solvation = 129.526798 kcal Electronic energy + Delta-G solvation = -19621.002378 eV Core-core repulsion = 16582.832156 eV Total energy + Delta-G solvation = -3038.170222 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.85079 -39.92109 -37.57179 -36.77164 -35.78226 -34.01005 -31.84897 -31.55606 -30.36642 -28.78582 -25.79970 -24.34254 -23.29847 -22.96088 -21.68706 -20.02056 -18.58565 -18.31845 -17.71945 -17.29570 -16.73686 -16.56322 -15.92184 -15.73999 -15.22852 -14.53619 -14.42169 -14.16624 -14.07319 -13.91655 -13.73518 -13.42898 -12.96588 -12.87186 -12.85626 -12.71358 -12.35334 -12.08414 -11.91097 -11.84028 -11.46483 -10.81306 -10.39548 -9.60491 -9.46807 -9.03958 -8.37258 -6.47323 0.54932 0.64887 0.72046 0.83579 1.32838 1.41055 1.44341 1.50421 1.54617 2.33088 2.48376 2.64464 2.82274 3.03578 3.19198 3.76634 3.96709 4.22118 4.30297 4.38811 4.47889 4.64560 4.85944 4.88994 5.05240 5.28972 5.37878 5.45120 5.59399 5.74623 5.76169 5.80307 6.06692 6.18688 6.34411 6.40845 6.57030 6.65489 7.20914 7.31638 8.68383 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.008238 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.321236 B = 3398.180055 C = 4610.889705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.332 3.668 3 C -0.097 4.097 4 N -0.206 5.206 5 N -0.084 5.084 6 N -0.359 5.359 7 C 0.308 3.692 8 H 0.090 0.910 9 C -0.531 4.531 10 H 0.058 0.942 11 C 0.043 3.957 12 N -0.891 5.891 13 Si 0.953 3.047 14 H -0.275 1.275 15 H -0.274 1.274 16 H -0.277 1.277 17 C -0.082 4.082 18 C -0.104 4.104 19 C -0.137 4.137 20 C -0.131 4.131 21 C -0.131 4.131 22 C -0.123 4.123 23 C 0.396 3.604 24 N -0.807 5.807 25 H 0.274 0.726 26 H 0.109 0.891 27 H 0.135 0.865 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.120 0.880 31 H 0.430 0.570 32 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 -6.642 0.228 6.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C 0.017 3.983 3 C -0.242 4.242 4 N -0.080 5.080 5 N -0.063 5.063 6 N -0.151 5.151 7 C 0.211 3.789 8 H 0.107 0.893 9 C -0.570 4.570 10 H 0.076 0.924 11 C -0.162 4.162 12 N -0.527 5.527 13 Si 0.778 3.222 14 H -0.200 1.200 15 H -0.199 1.199 16 H -0.202 1.202 17 C -0.083 4.083 18 C -0.123 4.123 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.142 4.142 23 C 0.150 3.850 24 N -0.359 5.359 25 H 0.084 0.916 26 H 0.127 0.873 27 H 0.153 0.847 28 H 0.164 0.836 29 H 0.161 0.839 30 H 0.138 0.862 31 H 0.265 0.735 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.081 -6.237 -0.825 6.384 hybrid contribution 0.519 0.700 1.523 1.755 sum -0.562 -5.537 0.698 5.609 Atomic orbital electron populations 1.81230 1.11014 1.12555 1.07782 1.23535 0.89814 0.91750 0.93210 1.15984 0.87002 1.27787 0.93460 1.74480 0.98070 1.11601 1.23850 1.81792 1.10241 1.21656 0.92634 1.51343 1.05239 1.47098 1.11414 1.18301 0.78059 0.93860 0.88692 0.89252 1.21212 1.29813 1.04385 1.01554 0.92424 1.25473 0.96257 0.99645 0.94783 1.69897 1.40620 1.34542 1.07607 0.85567 0.78435 0.79940 0.78215 1.19988 1.19918 1.20248 1.20350 0.99249 0.93845 0.94896 1.21100 0.96916 0.99190 0.95073 1.21378 0.99293 0.94102 1.00743 1.21374 1.00510 0.97256 0.95752 1.21337 0.98068 0.99597 0.95848 1.21152 1.00354 0.92824 0.99887 1.18616 0.85473 0.92452 0.88468 1.41381 1.12390 1.73061 1.09048 0.91614 0.87329 0.84697 0.83615 0.83942 0.86239 0.73524 0.74829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.91 18.54 19.00 0.35 -14.55 16 2 C 0.33 10.92 15.62 88.33 1.38 12.30 16 3 C -0.10 -3.44 6.96 40.12 0.28 -3.16 16 4 N -0.21 -8.30 12.38 -51.62 -0.64 -8.94 16 5 N -0.08 -3.55 12.44 37.02 0.46 -3.09 16 6 N -0.36 -14.34 3.28 -330.26 -1.08 -15.42 16 7 C 0.31 13.02 2.81 43.50 0.12 13.15 16 8 H 0.09 3.76 5.91 -2.39 -0.01 3.75 16 9 C -0.53 -25.53 8.00 25.60 0.20 -25.33 16 10 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 11 C 0.04 2.04 5.45 84.65 0.46 2.50 16 12 N -0.89 -42.39 12.84 21.44 0.28 -42.11 16 13 Si 0.95 39.27 29.54 68.60 2.03 41.30 16 14 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 16 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 17 C -0.08 -3.31 5.00 -19.87 -0.10 -3.41 16 18 C -0.10 -4.12 8.61 22.27 0.19 -3.93 16 19 C -0.14 -4.48 10.05 22.27 0.22 -4.26 16 20 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 21 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 22 C -0.12 -4.41 9.67 22.27 0.22 -4.20 16 23 C 0.40 13.42 8.07 132.35 1.07 14.49 16 24 N -0.81 -19.89 9.05 -54.40 -0.49 -20.39 16 25 H 0.27 12.43 8.31 -92.71 -0.77 11.66 16 26 H 0.11 4.61 7.35 -2.91 -0.02 4.59 16 27 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 28 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.12 4.00 7.95 -2.91 -0.02 3.98 16 31 H 0.43 8.08 8.67 -92.71 -0.80 7.28 16 32 H 0.42 9.80 7.77 -92.70 -0.72 9.08 16 Total: -1.00 -55.80 297.68 5.07 -50.73 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -0.33 Total: 21.55 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 4.50 Total: -9.08 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -1.13 Total: -104.50 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -55.80 5.07 -50.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713488386.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.255 kcal (2) G-P(sol) polarization free energy of solvation -55.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds