Wall clock time and date at job start Mon Mar 30 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 N 1.34562 * 125.97283 * 32.19317 * 3 2 1 5 5 N 1.28660 * 109.77151 * 179.97438 * 4 3 2 6 6 N 1.40144 * 108.90193 * 359.97438 * 5 4 3 7 7 C 1.46500 * 126.56084 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47326 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47196 * 299.97605 * 7 6 5 10 10 H 1.08000 * 120.00000 * 241.41581 * 9 7 6 11 11 C 1.37880 * 119.99912 * 61.41444 * 9 7 6 12 12 N 1.31522 * 119.99727 * 6.15660 * 11 9 7 13 13 Si 1.86798 * 120.00265 * 186.15491 * 11 9 7 14 14 H 1.48495 * 109.47133 * 60.00036 * 13 11 9 15 15 H 1.48499 * 109.47182 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46687 * 300.00395 * 13 11 9 17 17 C 1.50693 * 109.47234 * 59.97752 * 7 6 5 18 18 C 1.38233 * 120.00225 * 152.63169 * 17 7 6 19 19 C 1.38239 * 120.00228 * 179.78980 * 18 17 7 20 20 C 1.38227 * 119.99585 * 0.43728 * 19 18 17 21 21 C 1.38237 * 120.00598 * 359.81509 * 20 19 18 22 22 C 1.38233 * 120.00149 * 332.90144 * 17 7 6 23 23 C 1.35462 * 106.87988 * 0.02562 * 6 5 4 24 24 N 1.38159 * 126.80478 * 179.97438 * 23 6 5 25 25 H 0.96995 * 119.99401 * 179.97438 * 12 11 9 26 26 H 1.08004 * 119.99934 * 359.97438 * 18 17 7 27 27 H 1.08000 * 119.99785 * 180.27494 * 19 18 17 28 28 H 1.08007 * 119.99726 * 179.83603 * 20 19 18 29 29 H 1.07997 * 120.00131 * 179.97438 * 21 20 19 30 30 H 1.08002 * 119.99967 * 359.97438 * 22 17 7 31 31 H 0.96998 * 119.99781 * 0.02562 * 24 23 6 32 32 H 0.97003 * 120.00110 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3589 -0.9206 -0.5802 5 7 4.5942 -0.6160 -0.3894 6 7 4.6597 0.5693 0.3556 7 6 5.8760 1.2613 0.7893 8 1 5.6047 2.1552 1.3510 9 6 6.6899 0.3448 1.6660 10 1 6.8939 0.6183 2.6907 11 6 7.1741 -0.8429 1.1600 12 7 7.0306 -1.1204 -0.1176 13 14 8.0340 -2.0576 2.2888 14 1 7.1012 -2.4798 3.3643 15 1 8.4581 -3.2461 1.5059 16 1 9.2270 -1.4123 2.8935 17 6 6.6881 1.6538 -0.4178 18 6 7.5283 2.7499 -0.3589 19 6 8.2767 3.1075 -1.4649 20 6 8.1780 2.3742 -2.6325 21 6 7.3338 1.2812 -2.6931 22 6 6.5888 0.9212 -1.5858 23 6 3.3833 0.9526 0.5979 24 7 2.9737 2.0692 1.3009 25 1 7.3715 -1.9557 -0.4736 26 1 7.6024 3.3253 0.5521 27 1 8.9364 3.9612 -1.4174 28 1 8.7606 2.6551 -3.4975 29 1 7.2565 0.7086 -3.6055 30 1 5.9294 0.0671 -1.6331 31 1 3.6322 2.6725 1.6795 32 1 2.0276 2.2503 1.4153 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713488387.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:57 Heat of formation + Delta-G solvation = 169.215467 kcal Electronic energy + Delta-G solvation = -20099.367563 eV Core-core repulsion = 17062.918371 eV Total energy + Delta-G solvation = -3036.449192 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06375 -38.30308 -35.98532 -35.12027 -34.30388 -31.90048 -30.29663 -29.74088 -28.65953 -27.28031 -23.87476 -22.62800 -21.63657 -21.22629 -20.16587 -18.35139 -17.18435 -16.52934 -16.18845 -15.57517 -15.03923 -14.79873 -14.45142 -14.07430 -13.35051 -13.04754 -12.78956 -12.75186 -12.47116 -12.25981 -12.15281 -11.67372 -11.23306 -11.14275 -11.10287 -10.82829 -10.69265 -10.38291 -10.19873 -9.83984 -9.83416 -8.92959 -8.63131 -7.96631 -7.74251 -7.36216 -6.26851 -4.65791 2.26319 2.28659 2.43058 2.73489 2.93184 3.09024 3.16553 3.20907 3.22093 4.09107 4.11937 4.12385 4.53041 4.79645 4.96299 5.44166 5.56305 5.67994 5.83119 5.85944 6.04077 6.30379 6.39539 6.60858 6.67589 6.87075 7.00872 7.10626 7.30033 7.40448 7.49073 7.61341 7.65364 7.74457 7.94377 8.03821 8.05366 8.40232 9.06571 9.23159 10.54036 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.008833 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.515874 B = 3169.080174 C = 4160.926956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.324 3.676 3 C -0.102 4.102 4 N -0.229 5.229 5 N 0.015 4.985 6 N -0.342 5.342 7 C 0.296 3.704 8 H 0.063 0.937 9 C -0.538 4.538 10 H 0.075 0.925 11 C 0.082 3.918 12 N -0.796 5.796 13 Si 0.901 3.099 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.274 1.274 17 C -0.056 4.056 18 C -0.120 4.120 19 C -0.146 4.146 20 C -0.139 4.139 21 C -0.146 4.146 22 C -0.048 4.048 23 C 0.362 3.638 24 N -0.838 5.838 25 H 0.275 0.725 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.159 0.841 31 H 0.405 0.595 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.578 7.361 0.493 7.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C 0.009 3.991 3 C -0.245 4.245 4 N -0.104 5.104 5 N 0.035 4.965 6 N -0.134 5.134 7 C 0.201 3.799 8 H 0.081 0.919 9 C -0.575 4.575 10 H 0.093 0.907 11 C -0.133 4.133 12 N -0.425 5.425 13 Si 0.727 3.273 14 H -0.199 1.199 15 H -0.206 1.206 16 H -0.199 1.199 17 C -0.058 4.058 18 C -0.139 4.139 19 C -0.165 4.165 20 C -0.158 4.158 21 C -0.164 4.164 22 C -0.067 4.067 23 C 0.119 3.881 24 N -0.388 5.388 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.176 0.824 31 H 0.236 0.764 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -0.180 6.057 -0.401 6.073 hybrid contribution 0.640 0.379 1.383 1.570 sum 0.460 6.436 0.982 6.527 Atomic orbital electron populations 1.81184 1.11282 1.09244 1.12006 1.24003 0.90524 0.92688 0.91906 1.16013 0.86463 1.01502 1.20484 1.74680 0.99017 1.21069 1.15639 1.82390 1.07143 0.96550 1.10440 1.52864 1.03639 1.18971 1.37889 1.18217 0.79650 0.91401 0.90671 0.91910 1.21013 1.34057 1.04679 0.97789 0.90718 1.25084 0.94805 0.98156 0.95214 1.69934 1.37956 1.23346 1.11252 0.86491 0.79736 0.80349 0.80679 1.19923 1.20625 1.19940 1.19929 0.98033 0.93376 0.94439 1.20659 0.98076 0.97531 0.97619 1.20729 1.01163 1.00585 0.93977 1.20869 1.00263 0.97197 0.97429 1.21080 0.98994 0.97561 0.98802 1.21765 0.97788 0.96750 0.90363 1.18818 0.87244 0.88890 0.93142 1.41208 1.10745 1.25384 1.61513 0.91452 0.87456 0.87734 0.88010 0.87734 0.82397 0.76443 0.75665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.52 18.54 41.84 0.78 -7.74 16 2 C 0.32 5.94 15.62 -22.47 -0.35 5.59 16 3 C -0.10 -1.98 6.96 -84.51 -0.59 -2.57 16 4 N -0.23 -5.04 12.38 32.33 0.40 -4.64 16 5 N 0.01 0.33 8.27 60.35 0.50 0.83 16 6 N -0.34 -7.03 3.05 -55.74 -0.17 -7.20 16 7 C 0.30 6.02 3.05 -70.24 -0.21 5.81 16 8 H 0.06 1.09 6.89 -51.93 -0.36 0.74 16 9 C -0.54 -12.26 8.90 -34.44 -0.31 -12.57 16 10 H 0.07 1.66 7.82 -52.49 -0.41 1.25 16 11 C 0.08 1.92 5.06 -17.82 -0.09 1.83 16 12 N -0.80 -19.11 7.34 55.43 0.41 -18.71 16 13 Si 0.90 19.11 29.54 -169.99 -5.02 14.08 16 14 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 C -0.06 -1.16 4.60 -104.63 -0.48 -1.64 16 18 C -0.12 -2.22 9.71 -39.58 -0.38 -2.60 16 19 C -0.15 -2.52 10.05 -39.58 -0.40 -2.91 16 20 C -0.14 -2.44 10.05 -39.59 -0.40 -2.84 16 21 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 22 C -0.05 -1.02 7.12 -39.58 -0.28 -1.30 16 23 C 0.36 6.47 8.07 -153.25 -1.24 5.23 16 24 N -0.84 -10.69 9.05 31.45 0.28 -10.40 16 25 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 26 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 27 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.10 1.51 8.06 -52.48 -0.42 1.08 16 29 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.16 3.67 4.21 -52.49 -0.22 3.45 16 31 H 0.41 4.39 7.76 -40.82 -0.32 4.07 16 32 H 0.41 4.35 8.67 -40.82 -0.35 4.00 16 LS Contribution 284.63 15.07 4.29 4.29 Total: -1.00 -26.45 284.63 -6.15 -32.60 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -2.49 Total: 8.06 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -5.13 Total: -11.18 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 2.20 Total: -47.86 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.45 -6.15 -32.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713488387.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.818 kcal (2) G-P(sol) polarization free energy of solvation -26.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds