Wall clock time and date at job start Mon Mar 30 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 N 1.34562 * 125.97283 * 32.19317 * 3 2 1 5 5 N 1.28660 * 109.77151 * 179.97438 * 4 3 2 6 6 N 1.40144 * 108.90193 * 359.97438 * 5 4 3 7 7 C 1.46500 * 126.56084 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47326 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47196 * 299.97605 * 7 6 5 10 10 H 1.08000 * 120.00000 * 241.41581 * 9 7 6 11 11 C 1.37880 * 119.99912 * 61.41444 * 9 7 6 12 12 N 1.31522 * 119.99727 * 6.15660 * 11 9 7 13 13 Si 1.86798 * 120.00265 * 186.15491 * 11 9 7 14 14 H 1.48495 * 109.47133 * 60.00036 * 13 11 9 15 15 H 1.48499 * 109.47182 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46687 * 300.00395 * 13 11 9 17 17 C 1.50693 * 109.47234 * 59.97752 * 7 6 5 18 18 C 1.38233 * 120.00225 * 152.63169 * 17 7 6 19 19 C 1.38239 * 120.00228 * 179.78980 * 18 17 7 20 20 C 1.38227 * 119.99585 * 0.43728 * 19 18 17 21 21 C 1.38237 * 120.00598 * 359.81509 * 20 19 18 22 22 C 1.38233 * 120.00149 * 332.90144 * 17 7 6 23 23 C 1.35462 * 106.87988 * 0.02562 * 6 5 4 24 24 N 1.38159 * 126.80478 * 179.97438 * 23 6 5 25 25 H 0.96995 * 119.99401 * 179.97438 * 12 11 9 26 26 H 1.08004 * 119.99934 * 359.97438 * 18 17 7 27 27 H 1.08000 * 119.99785 * 180.27494 * 19 18 17 28 28 H 1.08007 * 119.99726 * 179.83603 * 20 19 18 29 29 H 1.07997 * 120.00131 * 179.97438 * 21 20 19 30 30 H 1.08002 * 119.99967 * 359.97438 * 22 17 7 31 31 H 0.96998 * 119.99781 * 0.02562 * 24 23 6 32 32 H 0.97003 * 120.00110 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3589 -0.9206 -0.5802 5 7 4.5942 -0.6160 -0.3894 6 7 4.6597 0.5693 0.3556 7 6 5.8760 1.2613 0.7893 8 1 5.6047 2.1552 1.3510 9 6 6.6899 0.3448 1.6660 10 1 6.8939 0.6183 2.6907 11 6 7.1741 -0.8429 1.1600 12 7 7.0306 -1.1204 -0.1176 13 14 8.0340 -2.0576 2.2888 14 1 7.1012 -2.4798 3.3643 15 1 8.4581 -3.2461 1.5059 16 1 9.2270 -1.4123 2.8935 17 6 6.6881 1.6538 -0.4178 18 6 7.5283 2.7499 -0.3589 19 6 8.2767 3.1075 -1.4649 20 6 8.1780 2.3742 -2.6325 21 6 7.3338 1.2812 -2.6931 22 6 6.5888 0.9212 -1.5858 23 6 3.3833 0.9526 0.5979 24 7 2.9737 2.0692 1.3009 25 1 7.3715 -1.9557 -0.4736 26 1 7.6024 3.3253 0.5521 27 1 8.9364 3.9612 -1.4174 28 1 8.7606 2.6551 -3.4975 29 1 7.2565 0.7086 -3.6055 30 1 5.9294 0.0671 -1.6331 31 1 3.6322 2.6725 1.6795 32 1 2.0276 2.2503 1.4153 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713488387.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:57 Heat of formation + Delta-G solvation = 154.560159 kcal Electronic energy + Delta-G solvation = -20100.003065 eV Core-core repulsion = 17062.918371 eV Total energy + Delta-G solvation = -3037.084694 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.60546 -39.73954 -37.47779 -36.58217 -35.74577 -33.53758 -31.76575 -31.17512 -30.13331 -28.86274 -25.50489 -24.14236 -23.11806 -22.64910 -21.65294 -19.87171 -18.68757 -17.93637 -17.57437 -17.02000 -16.66735 -16.33652 -15.86947 -15.54047 -14.90160 -14.58099 -14.27655 -14.26155 -13.89907 -13.76681 -13.63746 -13.17474 -12.85362 -12.74100 -12.54947 -12.40885 -12.29261 -11.98139 -11.72906 -11.38141 -11.29482 -10.65308 -10.18257 -9.40499 -9.22950 -8.78209 -7.96178 -6.40088 0.81999 0.83724 1.00300 1.13633 1.40040 1.48113 1.51725 1.56415 1.60838 2.39786 2.61273 2.81705 3.00779 3.24975 3.34495 3.97359 4.09963 4.36259 4.43952 4.48721 4.66986 4.84345 4.99235 5.15828 5.23488 5.45756 5.57750 5.66392 5.75367 5.88222 5.90127 6.13115 6.25307 6.43779 6.51252 6.54506 6.69832 6.79034 7.33413 7.66277 8.78760 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.008833 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.515874 B = 3169.080174 C = 4160.926956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.334 3.666 3 C -0.112 4.112 4 N -0.251 5.251 5 N -0.016 5.016 6 N -0.349 5.349 7 C 0.295 3.705 8 H 0.092 0.908 9 C -0.554 4.554 10 H 0.075 0.925 11 C 0.048 3.952 12 N -0.808 5.808 13 Si 0.941 3.059 14 H -0.281 1.281 15 H -0.289 1.289 16 H -0.269 1.269 17 C -0.076 4.076 18 C -0.126 4.126 19 C -0.144 4.144 20 C -0.139 4.139 21 C -0.162 4.162 22 C -0.072 4.072 23 C 0.376 3.624 24 N -0.811 5.811 25 H 0.265 0.735 26 H 0.130 0.870 27 H 0.139 0.861 28 H 0.131 0.869 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.419 0.581 32 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.852 9.559 1.079 9.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C 0.019 3.981 3 C -0.255 4.255 4 N -0.125 5.125 5 N 0.004 4.996 6 N -0.142 5.142 7 C 0.200 3.800 8 H 0.110 0.890 9 C -0.592 4.592 10 H 0.093 0.907 11 C -0.164 4.164 12 N -0.438 5.438 13 Si 0.768 3.232 14 H -0.207 1.207 15 H -0.215 1.215 16 H -0.194 1.194 17 C -0.077 4.077 18 C -0.144 4.144 19 C -0.162 4.162 20 C -0.157 4.157 21 C -0.181 4.181 22 C -0.091 4.091 23 C 0.132 3.868 24 N -0.363 5.363 25 H 0.075 0.925 26 H 0.148 0.852 27 H 0.157 0.843 28 H 0.149 0.851 29 H 0.129 0.871 30 H 0.153 0.847 31 H 0.252 0.748 32 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.084 8.288 0.207 8.291 hybrid contribution 0.495 -0.202 1.189 1.303 sum 0.579 8.086 1.396 8.226 Atomic orbital electron populations 1.81197 1.11188 1.09382 1.12198 1.23752 0.90091 0.92532 0.91712 1.16110 0.86779 1.01711 1.20947 1.74635 0.99414 1.22129 1.16370 1.82407 1.07300 0.97897 1.11978 1.52439 1.04504 1.18894 1.38359 1.18297 0.79288 0.91662 0.90795 0.88999 1.21253 1.34676 1.05122 0.98163 0.90665 1.25572 0.95572 0.99388 0.95864 1.70101 1.38896 1.22929 1.11874 0.85881 0.79035 0.79006 0.79285 1.20696 1.21516 1.19439 1.20065 0.99022 0.94402 0.94227 1.20983 0.97434 0.96995 0.99028 1.21156 1.00727 1.01130 0.93183 1.21220 0.99512 0.96160 0.98773 1.21273 0.99500 0.98647 0.98646 1.21690 0.98700 0.96891 0.91807 1.18839 0.86030 0.89537 0.92408 1.41219 1.12068 1.23536 1.59521 0.92514 0.85216 0.84316 0.85083 0.87146 0.84690 0.74829 0.73980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.49 18.54 19.00 0.35 -16.14 16 2 C 0.33 11.89 15.62 88.33 1.38 13.27 16 3 C -0.11 -4.28 6.96 40.12 0.28 -4.00 16 4 N -0.25 -11.22 12.38 -51.62 -0.64 -11.85 16 5 N -0.02 -0.77 8.27 37.02 0.31 -0.46 16 6 N -0.35 -14.21 3.05 -330.27 -1.01 -15.22 16 7 C 0.30 11.69 3.05 43.50 0.13 11.83 16 8 H 0.09 2.97 6.89 -2.39 -0.02 2.95 16 9 C -0.55 -24.97 8.90 25.60 0.23 -24.74 16 10 H 0.08 3.27 7.82 -2.91 -0.02 3.25 16 11 C 0.05 2.27 5.06 84.65 0.43 2.70 16 12 N -0.81 -39.80 7.34 21.45 0.16 -39.64 16 13 Si 0.94 39.56 29.54 68.60 2.03 41.59 16 14 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 17 C -0.08 -3.04 4.60 -19.87 -0.09 -3.13 16 18 C -0.13 -4.33 9.71 22.27 0.22 -4.11 16 19 C -0.14 -4.48 10.05 22.27 0.22 -4.26 16 20 C -0.14 -4.52 10.05 22.27 0.22 -4.30 16 21 C -0.16 -6.19 10.05 22.27 0.22 -5.96 16 22 C -0.07 -3.09 7.12 22.27 0.16 -2.93 16 23 C 0.38 12.94 8.07 132.34 1.07 14.01 16 24 N -0.81 -18.43 9.05 -54.40 -0.49 -18.93 16 25 H 0.26 13.07 8.31 -92.71 -0.77 12.30 16 26 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 27 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 28 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 29 H 0.11 3.90 8.06 -2.91 -0.02 3.88 16 30 H 0.14 6.49 4.21 -2.91 -0.01 6.48 16 31 H 0.42 7.64 7.76 -92.71 -0.72 6.92 16 32 H 0.43 7.67 8.67 -92.71 -0.80 6.87 16 Total: -1.00 -57.27 284.63 4.86 -52.41 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -0.32 Total: 19.86 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 4.47 Total: -11.63 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -1.32 Total: -102.23 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -57.27 4.86 -52.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713488387.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.973 kcal (2) G-P(sol) polarization free energy of solvation -57.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds