Wall clock time and date at job start Mon Mar 30 2020 04:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47145 * 120.00172 * 2 1 3 5 5 C 1.46893 * 110.99924 * 274.99722 * 4 2 1 6 6 C 1.50706 * 109.47176 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99544 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46760 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00275 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99908 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00273 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99899 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47309 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47163 * 120.00345 * 14 12 10 17 17 H 1.48504 * 109.47233 * 240.00273 * 14 12 10 18 18 C 1.50708 * 109.47150 * 240.00235 * 2 1 3 19 19 C 1.35135 * 127.25011 * 99.99923 * 18 2 1 20 20 C 1.37809 * 114.76329 * 180.02562 * 19 18 2 21 21 N 1.30080 * 116.87476 * 359.97438 * 20 19 18 22 22 S 1.69599 * 107.15603 * 359.73455 * 21 20 19 23 23 H 1.08994 * 109.47047 * 59.99813 * 1 2 3 24 24 H 1.09008 * 109.47197 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46853 * 299.99754 * 1 2 3 26 26 H 1.00904 * 110.99923 * 151.04804 * 4 2 1 27 27 H 1.09001 * 109.46739 * 60.00281 * 5 4 2 28 28 H 1.09000 * 109.47767 * 300.00540 * 5 4 2 29 29 H 0.96994 * 119.99756 * 0.02562 * 8 6 5 30 30 H 1.08996 * 109.47366 * 299.99598 * 9 8 6 31 31 H 1.08992 * 109.47635 * 60.00246 * 9 8 6 32 32 H 0.96996 * 120.00505 * 180.02562 * 13 12 10 33 33 H 1.08003 * 122.61701 * 359.97438 * 19 18 2 34 34 H 1.07993 * 121.56040 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5874 -0.5220 3.5560 7 8 2.8677 -1.6988 3.4701 8 7 2.7274 0.1201 4.7327 9 6 3.2187 -0.6035 5.9079 10 6 3.2819 0.3349 7.0854 11 1 2.9861 1.3671 6.9698 12 6 3.7173 -0.1244 8.3104 13 7 4.0780 -1.3812 8.4512 14 14 3.7963 1.0390 9.7698 15 1 3.3402 2.3891 9.3519 16 1 2.9165 0.5334 10.8540 17 1 5.1945 1.1192 10.2638 18 6 2.0324 -0.7104 -1.2306 19 6 2.4811 -0.1474 -2.3741 20 6 2.8803 -1.0444 -3.3412 21 7 2.7818 -2.3078 -3.0479 22 16 2.1625 -2.4088 -1.4722 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.9174 -1.1205 1.0287 27 1 1.0871 0.6162 2.5525 28 1 2.7588 1.0462 2.1182 29 1 2.5028 1.0612 4.8014 30 1 2.5425 -1.4274 6.1363 31 1 4.2142 -0.9968 5.7025 32 1 4.3840 -1.7044 9.3130 33 1 2.5228 0.9220 -2.5192 34 1 3.2580 -0.7138 -4.2974 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715989284.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:42 Heat of formation + Delta-G solvation = -0.639928 kcal Electronic energy + Delta-G solvation = -17375.816959 eV Core-core repulsion = 14435.153485 eV Total energy + Delta-G solvation = -2940.663474 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.31198 -38.78560 -36.70319 -34.18220 -32.40941 -32.06187 -29.71656 -27.85474 -26.10415 -24.91369 -22.54874 -21.65969 -20.33164 -19.63304 -18.10351 -17.15753 -16.24723 -15.70518 -15.62530 -15.31313 -14.70487 -14.57419 -14.38337 -13.83513 -13.55755 -13.26929 -12.89194 -12.57823 -12.37736 -12.05228 -11.91685 -11.84360 -11.55862 -11.13518 -10.96859 -10.91197 -10.56336 -10.33699 -9.75122 -9.39831 -9.09656 -8.89666 -8.75863 -8.59917 -7.89691 -6.18225 -4.25293 0.48462 1.31970 1.75936 2.24345 3.22131 3.29114 3.31971 3.33944 3.61880 4.17649 4.26544 4.41239 4.84440 4.90915 4.96943 5.04106 5.17913 5.27745 5.37621 5.42227 5.52977 5.56999 5.61189 5.67521 6.02512 6.36440 6.70556 7.16340 7.30262 7.41735 7.50546 7.65117 7.95457 8.60385 8.76649 9.08289 9.41471 10.92001 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.046249 B = 0.003059 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.276851 B = 9150.318401 C = 9424.266082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.159 3.841 3 H 0.067 0.933 4 N -0.666 5.666 5 C 0.040 3.960 6 C 0.496 3.504 7 O -0.541 6.541 8 N -0.714 5.714 9 C 0.250 3.750 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.175 4.175 19 C -0.208 4.208 20 C 0.085 3.915 21 N -0.474 5.474 22 S 0.304 5.696 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.354 0.646 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.390 0.610 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.154 0.846 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 6.533 -20.708 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.047 3.953 3 H 0.084 0.916 4 N -0.301 5.301 5 C -0.093 4.093 6 C 0.280 3.720 7 O -0.419 6.419 8 N -0.363 5.363 9 C 0.130 3.870 10 C -0.582 4.582 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.522 5.522 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.306 4.306 19 C -0.244 4.244 20 C -0.112 4.112 21 N -0.295 5.295 22 S 0.456 5.544 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.175 0.825 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.172 0.828 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.882 3.062 -20.266 21.324 hybrid contribution 0.890 3.544 0.303 3.667 sum -4.992 6.606 -19.964 21.613 Atomic orbital electron populations 1.21852 0.92502 1.03350 1.01960 1.19958 0.96474 0.94830 0.84024 0.91561 1.60322 1.35309 1.31903 1.02533 1.21915 1.02448 0.94225 0.90691 1.20273 0.79332 0.87887 0.84523 1.90680 1.50602 1.15822 1.84817 1.46437 1.65425 1.13846 1.10560 1.19101 0.94983 0.92510 0.80448 1.21260 1.46068 0.96527 0.94311 0.91865 1.24961 0.94820 0.95333 0.98948 1.69980 1.42947 1.14339 1.24945 0.86363 0.77818 0.80661 0.82066 1.19645 1.20778 1.20806 1.25668 1.03260 1.01448 1.00213 1.21310 1.06728 1.03099 0.93271 1.22767 0.98701 0.88306 1.01387 1.76723 1.21807 1.21532 1.09403 1.84530 1.56479 1.03026 1.10332 0.92146 0.91353 0.91390 0.82544 0.88198 0.92481 0.77774 0.95470 0.95584 0.92472 0.82800 0.80254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.40 37.16 0.35 -0.86 16 2 C 0.16 1.54 3.11 -68.86 -0.21 1.32 16 3 H 0.07 0.55 7.80 -51.93 -0.40 0.14 16 4 N -0.67 -8.59 5.78 -109.22 -0.63 -9.22 16 5 C 0.04 0.52 5.96 -4.98 -0.03 0.49 16 6 C 0.50 9.49 7.87 -10.98 -0.09 9.41 16 7 O -0.54 -12.78 16.20 5.56 0.09 -12.69 16 8 N -0.71 -14.50 5.55 -61.48 -0.34 -14.84 16 9 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 10 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 11 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.88 -25.97 13.29 55.43 0.74 -25.23 16 14 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 C -0.18 -1.75 5.20 -35.41 -0.18 -1.93 16 19 C -0.21 -1.74 10.17 -40.84 -0.42 -2.16 16 20 C 0.09 0.76 11.27 -18.45 -0.21 0.55 16 21 N -0.47 -5.58 12.09 28.86 0.35 -5.23 16 22 S 0.30 3.53 23.37 -107.50 -2.51 1.02 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 25 H 0.07 0.57 7.45 -51.93 -0.39 0.18 16 26 H 0.35 4.98 7.89 -39.29 -0.31 4.67 16 27 H 0.10 1.11 7.44 -51.93 -0.39 0.72 16 28 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 29 H 0.39 6.66 8.32 -40.82 -0.34 6.32 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.15 0.90 8.06 -52.48 -0.42 0.47 16 34 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 311.83 15.07 4.70 4.70 Total: -1.00 -32.81 311.83 -8.18 -40.99 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.32 Total: 4.77 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.23 Total: 0.09 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.11 Total: -54.52 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -2.51 Total: 1.02 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.81 -8.18 -40.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715989284.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.352 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds