Wall clock time and date at job start Mon Mar 30 2020 04:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47145 * 120.00172 * 2 1 3 5 5 C 1.46893 * 110.99924 * 274.99722 * 4 2 1 6 6 C 1.50706 * 109.47176 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99544 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46760 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00275 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99908 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00273 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99899 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47309 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47163 * 120.00345 * 14 12 10 17 17 H 1.48504 * 109.47233 * 240.00273 * 14 12 10 18 18 C 1.50708 * 109.47150 * 240.00235 * 2 1 3 19 19 C 1.35135 * 127.25011 * 99.99923 * 18 2 1 20 20 C 1.37809 * 114.76329 * 180.02562 * 19 18 2 21 21 N 1.30080 * 116.87476 * 359.97438 * 20 19 18 22 22 S 1.69599 * 107.15603 * 359.73455 * 21 20 19 23 23 H 1.08994 * 109.47047 * 59.99813 * 1 2 3 24 24 H 1.09008 * 109.47197 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46853 * 299.99754 * 1 2 3 26 26 H 1.00904 * 110.99923 * 151.04804 * 4 2 1 27 27 H 1.09001 * 109.46739 * 60.00281 * 5 4 2 28 28 H 1.09000 * 109.47767 * 300.00540 * 5 4 2 29 29 H 0.96994 * 119.99756 * 0.02562 * 8 6 5 30 30 H 1.08996 * 109.47366 * 299.99598 * 9 8 6 31 31 H 1.08992 * 109.47635 * 60.00246 * 9 8 6 32 32 H 0.96996 * 120.00505 * 180.02562 * 13 12 10 33 33 H 1.08003 * 122.61701 * 359.97438 * 19 18 2 34 34 H 1.07993 * 121.56040 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5874 -0.5220 3.5560 7 8 2.8677 -1.6988 3.4701 8 7 2.7274 0.1201 4.7327 9 6 3.2187 -0.6035 5.9079 10 6 3.2819 0.3349 7.0854 11 1 2.9861 1.3671 6.9698 12 6 3.7173 -0.1244 8.3104 13 7 4.0780 -1.3812 8.4512 14 14 3.7963 1.0390 9.7698 15 1 3.3402 2.3891 9.3519 16 1 2.9165 0.5334 10.8540 17 1 5.1945 1.1192 10.2638 18 6 2.0324 -0.7104 -1.2306 19 6 2.4811 -0.1474 -2.3741 20 6 2.8803 -1.0444 -3.3412 21 7 2.7818 -2.3078 -3.0479 22 16 2.1625 -2.4088 -1.4722 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.9174 -1.1205 1.0287 27 1 1.0871 0.6162 2.5525 28 1 2.7588 1.0462 2.1182 29 1 2.5028 1.0612 4.8014 30 1 2.5425 -1.4274 6.1363 31 1 4.2142 -0.9968 5.7025 32 1 4.3840 -1.7044 9.3130 33 1 2.5228 0.9220 -2.5192 34 1 3.2580 -0.7138 -4.2974 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715989284.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:41 Heat of formation + Delta-G solvation = -26.459374 kcal Electronic energy + Delta-G solvation = -17376.936575 eV Core-core repulsion = 14435.153485 eV Total energy + Delta-G solvation = -2941.783090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.58444 -39.80125 -37.67067 -36.08343 -34.33735 -33.05528 -30.56205 -29.55638 -27.32952 -25.85940 -24.35272 -22.53571 -21.48235 -20.83319 -19.22367 -18.57539 -17.59968 -17.13763 -16.90624 -16.58523 -16.07169 -15.76396 -15.40843 -15.15349 -14.65604 -14.24356 -14.11037 -13.96955 -13.90646 -13.32904 -13.11605 -12.90901 -12.74241 -12.70325 -12.52243 -12.20982 -11.91016 -11.44611 -11.33254 -10.80958 -10.76594 -10.47978 -9.81622 -9.70384 -9.50118 -8.28442 -6.44991 -0.24700 0.54735 1.00213 1.44057 1.45126 1.58111 1.58666 1.81186 2.29038 2.48814 3.06707 3.17700 3.44478 3.96415 4.19389 4.22498 4.32847 4.34932 4.42386 4.48859 4.79550 4.90235 4.93040 5.03011 5.13318 5.25740 5.35665 5.50379 5.66825 5.69939 5.85617 5.88992 6.15648 6.67090 6.96076 7.24874 7.54753 8.84020 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.046249 B = 0.003059 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.276851 B = 9150.318401 C = 9424.266082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.162 3.838 3 H 0.096 0.904 4 N -0.687 5.687 5 C 0.057 3.943 6 C 0.491 3.509 7 O -0.593 6.593 8 N -0.708 5.708 9 C 0.267 3.733 10 C -0.553 4.553 11 H 0.086 0.914 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.985 3.015 15 H -0.251 1.251 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.174 4.174 19 C -0.195 4.195 20 C 0.091 3.909 21 N -0.502 5.502 22 S 0.233 5.767 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.344 0.656 27 H 0.129 0.871 28 H 0.093 0.907 29 H 0.410 0.590 30 H -0.015 1.015 31 H -0.014 1.014 32 H 0.268 0.732 33 H 0.191 0.809 34 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.130 10.496 -21.729 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.052 3.948 3 H 0.114 0.886 4 N -0.321 5.321 5 C -0.074 4.074 6 C 0.278 3.722 7 O -0.474 6.474 8 N -0.359 5.359 9 C 0.144 3.856 10 C -0.591 4.591 11 H 0.104 0.896 12 C -0.198 4.198 13 N -0.571 5.571 14 Si 0.808 3.192 15 H -0.174 1.174 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.304 4.304 19 C -0.230 4.230 20 C -0.106 4.106 21 N -0.322 5.322 22 S 0.385 5.615 23 H 0.099 0.901 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.163 0.837 27 H 0.147 0.853 28 H 0.111 0.889 29 H 0.245 0.755 30 H 0.003 0.997 31 H 0.004 0.996 32 H 0.077 0.923 33 H 0.208 0.792 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.509 7.071 -21.327 23.393 hybrid contribution 1.085 2.310 0.486 2.598 sum -5.424 9.382 -20.841 23.490 Atomic orbital electron populations 1.21865 0.91881 1.02491 1.03290 1.20069 0.96810 0.95628 0.82315 0.88604 1.60311 1.34971 1.32944 1.03883 1.21841 1.04298 0.93775 0.87510 1.21456 0.77650 0.87533 0.85592 1.90660 1.52518 1.18558 1.85689 1.46149 1.65543 1.14568 1.09602 1.18507 0.91983 0.92120 0.83040 1.21666 1.45647 0.97418 0.94399 0.89603 1.26091 0.94101 0.97041 1.02565 1.70147 1.44139 1.16867 1.25958 0.85107 0.77746 0.78870 0.77455 1.17399 1.20599 1.20581 1.25752 1.03847 0.99716 1.01109 1.21679 1.04639 1.04671 0.92009 1.23472 0.96894 0.87527 1.02722 1.76825 1.23167 1.23327 1.08921 1.84735 1.58711 1.06128 1.11892 0.90137 0.93377 0.90682 0.83675 0.85337 0.88936 0.75453 0.99732 0.99648 0.92310 0.79198 0.76719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.40 71.98 0.68 -1.37 16 2 C 0.16 2.67 3.11 44.17 0.14 2.81 16 3 H 0.10 1.07 7.80 -2.39 -0.02 1.06 16 4 N -0.69 -16.75 5.78 -499.45 -2.89 -19.64 16 5 C 0.06 1.34 5.96 85.56 0.51 1.85 16 6 C 0.49 18.74 7.87 87.66 0.69 19.43 16 7 O -0.59 -29.22 16.20 -3.02 -0.05 -29.27 16 8 N -0.71 -28.69 5.55 -466.80 -2.59 -31.28 16 9 C 0.27 14.53 5.43 85.63 0.46 14.99 16 10 C -0.55 -29.71 9.28 25.60 0.24 -29.47 16 11 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 12 C 0.00 0.08 5.46 84.66 0.46 0.54 16 13 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 14 Si 0.99 41.90 29.54 68.60 2.03 43.93 16 15 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 16 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 18 C -0.17 -3.13 5.20 24.97 0.13 -3.00 16 19 C -0.19 -2.59 10.17 21.45 0.22 -2.37 16 20 C 0.09 1.40 11.27 84.85 0.96 2.35 16 21 N -0.50 -11.61 12.09 -62.60 -0.76 -12.37 16 22 S 0.23 5.58 23.37 -56.49 -1.32 4.26 16 23 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.07 1.01 7.45 -2.39 -0.02 0.99 16 26 H 0.34 9.63 7.89 -89.69 -0.71 8.93 16 27 H 0.13 2.33 7.44 -2.39 -0.02 2.31 16 28 H 0.09 1.58 8.06 -2.39 -0.02 1.56 16 29 H 0.41 13.20 8.32 -92.71 -0.77 12.43 16 30 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.19 1.15 8.06 -2.91 -0.02 1.12 16 34 H 0.22 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -76.39 311.83 -1.16 -77.55 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -0.35 Total: 17.12 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.48 Total: 5.77 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -5.95 Total: -119.35 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.05 Total: -29.27 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -1.32 Total: 4.26 kcal Total: -76.39 -1.16 -77.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715989284.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.088 kcal (2) G-P(sol) polarization free energy of solvation -76.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds