Wall clock time and date at job start Mon Mar 30 2020 04:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 5 5 C 1.46905 * 110.99870 * 84.99904 * 4 2 1 6 6 C 1.50697 * 109.47066 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00271 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00196 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00269 * 180.02562 * 8 6 5 10 10 C 1.50709 * 109.47176 * 179.97438 * 9 8 6 11 11 H 1.07997 * 119.99789 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99840 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99881 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00038 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47351 * 89.99803 * 14 12 10 16 16 H 1.48500 * 109.47007 * 209.99624 * 14 12 10 17 17 H 1.48503 * 109.47355 * 329.99582 * 14 12 10 18 18 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 19 19 C 1.35142 * 127.25045 * 259.70920 * 18 2 1 20 20 C 1.37812 * 114.75978 * 179.86310 * 19 18 2 21 21 N 1.30079 * 116.88337 * 0.45143 * 20 19 18 22 22 S 1.69604 * 107.14960 * 359.75520 * 21 20 19 23 23 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 24 24 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 26 26 H 1.00901 * 111.00067 * 208.95080 * 4 2 1 27 27 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 28 28 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 29 29 H 0.97009 * 119.99629 * 359.97438 * 8 6 5 30 30 H 1.09002 * 109.46836 * 299.99712 * 9 8 6 31 31 H 1.08998 * 109.47341 * 59.99973 * 9 8 6 32 32 H 0.97001 * 119.99802 * 180.02562 * 13 12 10 33 33 H 1.07997 * 122.62149 * 0.03635 * 19 18 2 34 34 H 1.08000 * 121.55896 * 180.20460 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5873 -0.5216 -3.5560 7 8 2.8668 -1.6987 -3.4705 8 7 2.7282 0.1206 -4.7325 9 6 3.2185 -0.6031 -5.9081 10 6 3.2830 0.3358 -7.0852 11 1 2.9879 1.3681 -6.9693 12 6 3.7188 -0.1233 -8.3101 13 7 3.7746 0.6959 -9.3374 14 14 4.2286 -1.9091 -8.5107 15 1 3.0484 -2.7195 -8.9054 16 1 5.2727 -2.0108 -9.5617 17 1 4.7699 -2.4169 -7.2244 18 6 2.0323 -0.7104 1.2304 19 6 2.4862 -0.1474 2.3720 20 6 2.8817 -1.0446 3.3404 21 7 2.7835 -2.3080 3.0470 22 16 2.1558 -2.4090 1.4747 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.9173 -1.1204 -1.0288 27 1 1.0870 0.6164 -2.5525 28 1 2.7588 1.0463 -2.1182 29 1 2.5043 1.0620 -4.8010 30 1 4.2136 -0.9979 -5.7028 31 1 2.5412 -1.4259 -6.1368 32 1 4.0809 0.3728 -10.1992 33 1 2.5325 0.9220 2.5154 34 1 3.2594 -0.7140 4.2967 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715989295.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:44 Heat of formation + Delta-G solvation = -22.714887 kcal Electronic energy + Delta-G solvation = -17431.979821 eV Core-core repulsion = 14490.359105 eV Total energy + Delta-G solvation = -2941.620717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.62919 -39.80891 -37.68492 -36.10138 -34.39857 -33.08436 -30.68707 -29.96428 -27.38172 -25.82773 -23.93101 -22.52511 -21.55559 -20.85882 -19.33393 -18.69454 -17.77599 -17.12727 -16.94883 -16.60499 -15.97269 -15.80458 -15.45477 -15.21310 -14.74438 -14.47813 -14.20503 -14.09903 -13.94610 -13.35866 -13.14203 -13.07491 -12.71575 -12.69627 -12.52192 -11.93946 -11.91078 -11.64907 -11.33697 -10.91784 -10.81993 -10.48711 -9.91655 -9.69990 -9.51493 -8.40073 -6.46628 -0.25096 0.54685 0.99932 1.32607 1.35277 1.47369 1.57799 1.76706 2.27687 2.33474 2.95653 3.15565 3.44503 3.92368 4.19055 4.22219 4.32511 4.34897 4.42386 4.48342 4.78133 4.80809 4.91318 4.92866 5.02639 5.04198 5.27067 5.35451 5.54180 5.66923 5.83215 6.10519 6.16147 6.54976 6.88681 7.16721 7.45738 8.74591 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.039475 B = 0.003311 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.145482 B = 8454.371165 C = 8843.318634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.162 3.838 3 H 0.095 0.905 4 N -0.685 5.685 5 C 0.055 3.945 6 C 0.496 3.504 7 O -0.588 6.588 8 N -0.706 5.706 9 C 0.232 3.768 10 C -0.545 4.545 11 H 0.062 0.938 12 C 0.027 3.973 13 N -0.931 5.931 14 Si 0.936 3.064 15 H -0.266 1.266 16 H -0.274 1.274 17 H -0.262 1.262 18 C -0.173 4.173 19 C -0.196 4.196 20 C 0.091 3.909 21 N -0.502 5.502 22 S 0.237 5.763 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.345 0.655 27 H 0.128 0.872 28 H 0.092 0.908 29 H 0.410 0.590 30 H 0.011 0.989 31 H 0.009 0.991 32 H 0.272 0.728 33 H 0.190 0.810 34 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 3.035 24.969 25.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.052 3.948 3 H 0.113 0.887 4 N -0.319 5.319 5 C -0.077 4.077 6 C 0.283 3.717 7 O -0.468 6.468 8 N -0.357 5.357 9 C 0.108 3.892 10 C -0.583 4.583 11 H 0.080 0.920 12 C -0.174 4.174 13 N -0.570 5.570 14 Si 0.760 3.240 15 H -0.191 1.191 16 H -0.199 1.199 17 H -0.186 1.186 18 C -0.304 4.304 19 C -0.231 4.231 20 C -0.106 4.106 21 N -0.323 5.323 22 S 0.389 5.611 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.164 0.836 27 H 0.146 0.854 28 H 0.110 0.890 29 H 0.246 0.754 30 H 0.029 0.971 31 H 0.027 0.973 32 H 0.081 0.919 33 H 0.207 0.793 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.489 -0.248 24.489 25.098 hybrid contribution 1.128 1.858 -0.201 2.183 sum -4.361 1.610 24.288 24.729 Atomic orbital electron populations 1.21864 0.91907 1.02538 1.03245 1.20054 0.96784 0.95612 0.82389 0.88743 1.60320 1.34972 1.32838 1.03778 1.21846 1.04338 0.93874 0.87633 1.21349 0.77520 0.87510 0.85320 1.90654 1.52420 1.18141 1.85610 1.45996 1.65705 1.14658 1.09320 1.19058 0.93666 0.92586 0.83851 1.21307 1.45540 0.97587 0.93849 0.92019 1.25583 0.94631 1.01840 0.95328 1.69979 1.47696 1.37404 1.01935 0.85880 0.79103 0.80326 0.78709 1.19104 1.19858 1.18601 1.25741 1.03784 0.99795 1.01083 1.21678 1.04706 1.04638 0.92061 1.23459 0.96949 0.87544 1.02676 1.76823 1.23055 1.23278 1.09104 1.84679 1.58397 1.05938 1.12098 0.90733 0.93238 0.90260 0.83555 0.85417 0.89035 0.75414 0.97143 0.97333 0.91868 0.79334 0.76806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.40 71.98 0.68 -1.25 16 2 C 0.16 2.49 3.11 44.16 0.14 2.63 16 3 H 0.10 0.99 7.80 -2.39 -0.02 0.98 16 4 N -0.69 -15.39 5.79 -499.48 -2.89 -18.28 16 5 C 0.05 1.18 5.97 85.55 0.51 1.69 16 6 C 0.50 17.30 7.87 87.66 0.69 17.99 16 7 O -0.59 -26.01 16.20 -3.04 -0.05 -26.06 16 8 N -0.71 -26.75 5.55 -466.78 -2.59 -29.34 16 9 C 0.23 11.25 4.50 85.64 0.39 11.63 16 10 C -0.54 -29.66 9.83 25.60 0.25 -29.41 16 11 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 12 C 0.03 1.49 5.47 84.65 0.46 1.95 16 13 N -0.93 -55.27 13.96 21.45 0.30 -54.97 16 14 Si 0.94 44.11 27.47 68.60 1.88 45.99 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.26 -12.28 6.54 99.48 0.65 -11.63 16 18 C -0.17 -2.93 5.20 24.97 0.13 -2.81 16 19 C -0.20 -2.46 10.17 21.45 0.22 -2.24 16 20 C 0.09 1.33 11.27 84.85 0.96 2.28 16 21 N -0.50 -11.10 12.09 -62.61 -0.76 -11.85 16 22 S 0.24 5.32 23.38 -56.49 -1.32 4.00 16 23 H 0.07 0.95 7.45 -2.39 -0.02 0.93 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.35 8.86 7.90 -89.69 -0.71 8.15 16 27 H 0.13 2.17 7.44 -2.39 -0.02 2.15 16 28 H 0.09 1.46 8.05 -2.39 -0.02 1.44 16 29 H 0.41 13.14 8.32 -92.70 -0.77 12.37 16 30 H 0.01 0.54 7.20 -2.39 -0.02 0.53 16 31 H 0.01 0.44 7.57 -2.39 -0.02 0.43 16 32 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.22 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -72.51 308.25 -1.41 -73.92 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -0.40 Total: 14.11 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 4.42 Total: 2.48 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -5.94 Total: -114.44 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Atomic # 16 Polarization: 5.32 SS G_CDS: -1.32 Total: 4.00 kcal Total: -72.51 -1.41 -73.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715989295.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.207 kcal (2) G-P(sol) polarization free energy of solvation -72.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds