Wall clock time and date at job start Mon Mar 30 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47153 * 2 1 4 4 C 1.50704 * 109.47161 * 240.00970 * 2 1 3 5 5 H 1.08007 * 119.99414 * 239.99725 * 4 2 1 6 6 C 1.37867 * 120.00459 * 59.99489 * 4 2 1 7 7 N 1.31518 * 120.00299 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00372 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47078 * 59.99611 * 8 6 4 10 10 H 1.48498 * 109.47566 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47116 * 300.00332 * 8 6 4 12 12 N 1.46494 * 109.47401 * 120.00475 * 2 1 3 13 13 C 1.46497 * 119.99958 * 59.99966 * 12 2 1 14 14 C 1.34778 * 119.99934 * 240.00198 * 12 2 1 15 15 O 1.21281 * 120.00126 * 359.97438 * 14 12 2 16 16 C 1.50708 * 119.99715 * 179.97438 * 14 12 2 17 17 C 1.53734 * 113.62138 * 179.97438 * 16 14 12 18 18 C 1.54048 * 87.16003 * 140.26705 * 17 16 14 19 19 C 1.56157 * 117.01489 * 93.23061 * 18 17 16 20 20 S 1.83033 * 82.61759 * 105.25889 * 19 18 17 21 21 C 1.56244 * 117.02050 * 215.53126 * 18 17 16 22 22 C 1.53723 * 113.70203 * 277.47320 * 16 14 12 23 23 H 1.08994 * 109.46975 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47075 * 299.99609 * 1 2 3 25 25 H 1.09003 * 109.47268 * 59.99442 * 1 2 3 26 26 H 0.96993 * 120.00520 * 180.02562 * 7 6 4 27 27 H 1.09007 * 109.46981 * 270.00008 * 13 12 2 28 28 H 1.09003 * 109.47270 * 30.00121 * 13 12 2 29 29 H 1.09002 * 109.47267 * 150.00637 * 13 12 2 30 30 H 1.09000 * 112.85657 * 48.77516 * 16 14 12 31 31 H 1.09000 * 113.59717 * 25.69928 * 17 16 14 32 32 H 1.08995 * 113.67331 * 254.84969 * 17 16 14 33 33 H 1.09002 * 114.35898 * 351.81220 * 19 18 17 34 34 H 1.08998 * 114.35960 * 218.70511 * 19 18 17 35 35 H 1.09004 * 114.32279 * 141.31139 * 21 18 17 36 36 H 1.08996 * 114.41238 * 8.18674 * 21 18 17 37 37 H 1.09001 * 113.60230 * 105.23794 * 22 16 14 38 38 H 1.09005 * 113.60362 * 334.38227 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1315 6 6 1.6993 -0.2391 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3214 -1.1199 -4.0081 9 1 1.8259 -2.5199 -4.0080 10 1 1.8269 -0.4194 -5.2205 11 1 3.8064 -1.1204 -4.0083 12 7 2.0184 -0.6907 1.1960 13 6 1.6645 -2.0932 1.4278 14 6 2.7932 -0.0357 2.0832 15 8 3.0865 1.1253 1.8912 16 6 3.2951 -0.7461 3.3140 17 6 4.1650 0.1370 4.2233 18 6 3.4563 -0.5283 5.4183 19 6 4.1476 -1.7801 6.0457 20 16 4.5703 -0.5896 7.3701 21 6 3.1778 0.3682 6.6673 22 6 2.2751 -0.7867 4.4633 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.7088 1.1617 -3.4843 27 1 0.7376 -2.1445 1.9992 28 1 1.5295 -2.5969 0.4705 29 1 2.4629 -2.5820 1.9861 30 1 3.7408 -1.7155 3.0911 31 1 3.9539 1.2021 4.1285 32 1 5.2295 -0.0902 4.1655 33 1 5.0048 -2.1496 5.4829 34 1 3.4591 -2.5676 6.3521 35 1 2.2170 0.1830 7.1477 36 1 3.3902 1.4269 6.5183 37 1 1.8092 -1.7627 4.5990 38 1 1.5515 0.0281 4.4336 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718340519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:09 Heat of formation + Delta-G solvation = 7.751563 kcal Electronic energy + Delta-G solvation = -18981.565932 eV Core-core repulsion = 16144.806683 eV Total energy + Delta-G solvation = -2836.759249 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28970 -37.98503 -35.27989 -32.91150 -31.73511 -29.36108 -27.26160 -26.11239 -25.79246 -25.24193 -24.13770 -20.67163 -18.51337 -18.14703 -16.83713 -16.50592 -16.28338 -15.43750 -15.27442 -14.78335 -14.46497 -14.21752 -13.49940 -13.45626 -12.73165 -12.60800 -12.39616 -12.32828 -12.00341 -11.89481 -11.66487 -11.48078 -11.34117 -11.04057 -10.87673 -10.77102 -10.66064 -10.39491 -10.26091 -10.17469 -9.55910 -9.19508 -8.81930 -8.42941 -7.90893 -7.58612 -6.08290 -4.16556 1.52797 1.91617 3.26466 3.30794 3.32201 3.36304 3.87682 4.13035 4.18607 4.32022 4.39744 4.54855 4.78413 5.08651 5.20183 5.22607 5.27612 5.36123 5.41023 5.44820 5.67396 5.77795 5.79788 5.95815 6.01069 6.07328 6.32067 6.37496 6.74127 6.82269 7.05684 7.42446 7.53102 7.70827 8.00844 8.19452 8.54213 8.82247 9.07016 9.50120 10.96961 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042828 B = 0.004071 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.625758 B = 6876.193755 C = 6968.731635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.590 5.590 13 C 0.086 3.914 14 C 0.512 3.488 15 O -0.553 6.553 16 C -0.136 4.136 17 C -0.085 4.085 18 C -0.115 4.115 19 C -0.042 4.042 20 S -0.320 6.320 21 C -0.049 4.049 22 C -0.104 4.104 23 H 0.029 0.971 24 H 0.010 0.990 25 H 0.092 0.908 26 H 0.264 0.736 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 -6.322 15.456 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.321 5.321 13 C -0.059 4.059 14 C 0.299 3.701 15 O -0.432 6.432 16 C -0.157 4.157 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.190 4.190 20 S -0.093 6.093 21 C -0.198 4.198 22 C -0.144 4.144 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.876 -5.473 16.202 17.341 hybrid contribution -0.525 -0.789 -1.746 1.987 sum 2.351 -6.262 14.455 15.928 Atomic orbital electron populations 1.22072 0.98253 0.99334 1.00713 1.18926 0.90837 0.94527 0.80046 0.91980 1.21281 1.31883 1.13028 0.90355 0.92343 1.24889 0.94931 0.94970 0.98952 1.69866 1.36286 1.22557 1.23873 0.86559 0.79250 0.79562 0.82027 1.20237 1.21155 1.20248 1.48216 1.48924 1.11559 1.23386 1.21584 0.98687 0.83400 1.02180 1.20143 0.79130 0.86987 0.83845 1.90636 1.58656 1.17255 1.76689 1.22648 0.99020 1.00707 0.93333 1.22808 0.98722 1.00544 0.90237 1.24344 0.99061 0.93660 0.94536 1.24696 1.02588 0.96814 0.94941 1.88425 1.45313 1.26322 1.49269 1.24850 0.97524 1.01870 0.95516 1.22982 0.95493 1.02919 0.93010 0.95211 0.97108 0.88907 0.92621 0.93993 0.90275 0.92860 0.87369 0.87875 0.90591 0.87197 0.87413 0.87586 0.87166 0.90458 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.97 37.16 0.33 -3.11 16 2 C 0.26 6.49 2.64 -69.08 -0.18 6.31 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.48 16 4 C -0.53 -14.10 7.99 -34.44 -0.28 -14.37 16 5 H 0.06 1.53 7.33 -52.48 -0.38 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.59 -12.20 2.75 -175.26 -0.48 -12.68 16 13 C 0.09 1.37 9.24 59.85 0.55 1.92 16 14 C 0.51 10.14 7.21 -10.98 -0.08 10.06 16 15 O -0.55 -13.31 15.23 5.56 0.08 -13.22 16 16 C -0.14 -1.85 2.87 -91.01 -0.26 -2.11 16 17 C -0.09 -1.08 6.86 -25.80 -0.18 -1.26 16 18 C -0.11 -1.16 0.91 -149.96 -0.14 -1.29 16 19 C -0.04 -0.37 8.45 38.85 0.33 -0.05 16 20 S -0.32 -3.54 24.06 -107.50 -2.59 -6.13 16 21 C -0.05 -0.47 8.55 38.90 0.33 -0.14 16 22 C -0.10 -1.14 7.07 -25.79 -0.18 -1.32 16 23 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 27 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 28 H 0.08 1.38 7.02 -51.93 -0.36 1.01 16 29 H 0.05 0.68 6.21 -51.93 -0.32 0.36 16 30 H 0.11 1.29 6.94 -51.93 -0.36 0.93 16 31 H 0.10 1.50 7.44 -51.93 -0.39 1.11 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -30.85 317.41 -8.26 -39.12 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.83 Total: 0.35 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 0.16 Total: -3.69 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.15 Total: -37.05 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.59 Total: -6.13 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.85 -8.26 -39.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718340519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.868 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds