Wall clock time and date at job start Mon Mar 30 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47153 * 2 1 4 4 C 1.50704 * 109.47161 * 240.00970 * 2 1 3 5 5 H 1.08007 * 119.99414 * 239.99725 * 4 2 1 6 6 C 1.37867 * 120.00459 * 59.99489 * 4 2 1 7 7 N 1.31518 * 120.00299 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00372 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47078 * 59.99611 * 8 6 4 10 10 H 1.48498 * 109.47566 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47116 * 300.00332 * 8 6 4 12 12 N 1.46494 * 109.47401 * 120.00475 * 2 1 3 13 13 C 1.46497 * 119.99958 * 59.99966 * 12 2 1 14 14 C 1.34778 * 119.99934 * 240.00198 * 12 2 1 15 15 O 1.21281 * 120.00126 * 359.97438 * 14 12 2 16 16 C 1.50708 * 119.99715 * 179.97438 * 14 12 2 17 17 C 1.53734 * 113.62138 * 179.97438 * 16 14 12 18 18 C 1.54048 * 87.16003 * 140.26705 * 17 16 14 19 19 C 1.56157 * 117.01489 * 93.23061 * 18 17 16 20 20 S 1.83033 * 82.61759 * 105.25889 * 19 18 17 21 21 C 1.56244 * 117.02050 * 215.53126 * 18 17 16 22 22 C 1.53723 * 113.70203 * 277.47320 * 16 14 12 23 23 H 1.08994 * 109.46975 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47075 * 299.99609 * 1 2 3 25 25 H 1.09003 * 109.47268 * 59.99442 * 1 2 3 26 26 H 0.96993 * 120.00520 * 180.02562 * 7 6 4 27 27 H 1.09007 * 109.46981 * 270.00008 * 13 12 2 28 28 H 1.09003 * 109.47270 * 30.00121 * 13 12 2 29 29 H 1.09002 * 109.47267 * 150.00637 * 13 12 2 30 30 H 1.09000 * 112.85657 * 48.77516 * 16 14 12 31 31 H 1.09000 * 113.59717 * 25.69928 * 17 16 14 32 32 H 1.08995 * 113.67331 * 254.84969 * 17 16 14 33 33 H 1.09002 * 114.35898 * 351.81220 * 19 18 17 34 34 H 1.08998 * 114.35960 * 218.70511 * 19 18 17 35 35 H 1.09004 * 114.32279 * 141.31139 * 21 18 17 36 36 H 1.08996 * 114.41238 * 8.18674 * 21 18 17 37 37 H 1.09001 * 113.60230 * 105.23794 * 22 16 14 38 38 H 1.09005 * 113.60362 * 334.38227 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1315 6 6 1.6993 -0.2391 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3214 -1.1199 -4.0081 9 1 1.8259 -2.5199 -4.0080 10 1 1.8269 -0.4194 -5.2205 11 1 3.8064 -1.1204 -4.0083 12 7 2.0184 -0.6907 1.1960 13 6 1.6645 -2.0932 1.4278 14 6 2.7932 -0.0357 2.0832 15 8 3.0865 1.1253 1.8912 16 6 3.2951 -0.7461 3.3140 17 6 4.1650 0.1370 4.2233 18 6 3.4563 -0.5283 5.4183 19 6 4.1476 -1.7801 6.0457 20 16 4.5703 -0.5896 7.3701 21 6 3.1778 0.3682 6.6673 22 6 2.2751 -0.7867 4.4633 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.7088 1.1617 -3.4843 27 1 0.7376 -2.1445 1.9992 28 1 1.5295 -2.5969 0.4705 29 1 2.4629 -2.5820 1.9861 30 1 3.7408 -1.7155 3.0911 31 1 3.9539 1.2021 4.1285 32 1 5.2295 -0.0902 4.1655 33 1 5.0048 -2.1496 5.4829 34 1 3.4591 -2.5676 6.3521 35 1 2.2170 0.1830 7.1477 36 1 3.3902 1.4269 6.5183 37 1 1.8092 -1.7627 4.5990 38 1 1.5515 0.0281 4.4336 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718340519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:09 Heat of formation + Delta-G solvation = -10.373085 kcal Electronic energy + Delta-G solvation = -18982.351875 eV Core-core repulsion = 16144.806683 eV Total energy + Delta-G solvation = -2837.545192 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.49992 -39.33525 -37.03664 -34.78197 -32.81296 -31.14502 -27.97203 -27.51837 -27.30277 -26.72600 -25.47370 -22.36064 -19.73540 -19.29587 -18.50299 -17.97915 -17.41291 -17.08151 -16.38956 -16.18330 -15.65641 -15.55045 -14.97488 -14.40863 -14.18210 -13.93086 -13.73221 -13.56810 -13.30221 -13.05919 -13.00309 -12.84541 -12.74038 -12.67532 -12.61648 -12.25193 -12.16487 -12.09482 -11.70847 -11.31755 -11.18465 -10.67451 -10.49063 -10.12870 -9.27254 -8.73909 -8.13728 -6.30587 0.76936 1.19072 1.41772 1.44232 1.51509 1.84745 2.34850 2.53738 3.14087 3.26714 3.31392 3.51415 3.53953 3.74932 4.08336 4.27141 4.45216 4.59844 4.61027 4.68426 4.72217 4.78045 4.79902 4.81569 4.85838 4.91316 5.01363 5.08099 5.09595 5.12506 5.33086 5.49171 5.63960 5.69310 6.06884 6.18261 6.77984 6.91183 7.34764 7.54555 8.90307 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042828 B = 0.004071 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.625758 B = 6876.193755 C = 6968.731635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.260 3.740 3 H 0.005 0.995 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.261 1.261 10 H -0.285 1.285 11 H -0.278 1.278 12 N -0.598 5.598 13 C 0.081 3.919 14 C 0.501 3.499 15 O -0.610 6.610 16 C -0.128 4.128 17 C -0.093 4.093 18 C -0.099 4.099 19 C -0.020 4.020 20 S -0.377 6.377 21 C -0.040 4.040 22 C -0.093 4.093 23 H 0.047 0.953 24 H 0.019 0.981 25 H 0.064 0.936 26 H 0.264 0.736 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.138 0.862 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.803 -9.434 16.557 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.157 3.843 3 H 0.022 0.978 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.185 1.185 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.328 5.328 13 C -0.061 4.061 14 C 0.290 3.710 15 O -0.493 6.493 16 C -0.149 4.149 17 C -0.131 4.131 18 C -0.101 4.101 19 C -0.167 4.167 20 S -0.151 6.151 21 C -0.187 4.187 22 C -0.133 4.133 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.156 0.844 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.766 -8.631 17.331 19.558 hybrid contribution -0.477 0.241 -2.074 2.142 sum 2.289 -8.389 15.257 17.561 Atomic orbital electron populations 1.21844 0.97201 1.00048 0.99761 1.18498 0.91596 0.92122 0.82061 0.97752 1.21572 1.31862 1.13093 0.91194 0.91995 1.25746 0.95087 0.95638 1.02072 1.70021 1.37371 1.23928 1.24440 0.85521 0.78374 0.79058 0.78132 1.18530 1.21046 1.20322 1.48232 1.49015 1.13421 1.22123 1.21853 1.01398 0.80454 1.02405 1.21278 0.78009 0.86612 0.85068 1.90608 1.60467 1.20070 1.78149 1.22744 1.00420 1.01124 0.90648 1.22777 0.99169 0.99184 0.91927 1.24224 0.97887 0.94201 0.93750 1.24868 1.03056 0.96170 0.92621 1.88701 1.46797 1.28549 1.51077 1.24934 0.97595 1.01476 0.94735 1.22972 0.94983 1.04281 0.91043 0.93421 0.96213 0.91677 0.92697 0.91540 0.91749 0.88880 0.84443 0.90668 0.90204 0.86119 0.84668 0.85597 0.87693 0.87062 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.23 8.97 71.98 0.65 -5.59 16 2 C 0.26 13.47 2.64 44.25 0.12 13.58 16 3 H 0.00 0.28 6.90 -2.39 -0.02 0.27 16 4 C -0.54 -29.12 7.99 25.60 0.20 -28.92 16 5 H 0.06 3.22 7.33 -2.91 -0.02 3.20 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.16 11.32 21.44 0.24 -52.92 16 8 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 9 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.60 -24.39 2.75 -826.78 -2.28 -26.66 16 13 C 0.08 2.34 9.24 127.77 1.18 3.53 16 14 C 0.50 19.81 7.21 87.66 0.63 20.44 16 15 O -0.61 -30.81 15.23 -3.03 -0.05 -30.86 16 16 C -0.13 -3.19 2.87 -11.05 -0.03 -3.22 16 17 C -0.09 -2.25 6.86 31.20 0.21 -2.03 16 18 C -0.10 -1.71 0.91 -49.24 -0.04 -1.75 16 19 C -0.02 -0.27 8.45 73.08 0.62 0.35 16 20 S -0.38 -7.61 24.06 -56.49 -1.36 -8.97 16 21 C -0.04 -0.68 8.55 73.11 0.63 -0.05 16 22 C -0.09 -1.70 7.07 31.20 0.22 -1.48 16 23 H 0.05 2.05 7.67 -2.39 -0.02 2.04 16 24 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 3.49 6.07 -2.39 -0.01 3.48 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.06 2.07 7.02 -2.39 -0.02 2.06 16 29 H 0.09 1.93 6.21 -2.39 -0.01 1.92 16 30 H 0.14 2.64 6.94 -2.39 -0.02 2.63 16 31 H 0.07 2.27 7.44 -2.39 -0.02 2.25 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.70 8.10 -2.38 -0.02 1.68 16 Total: -1.00 -71.52 317.41 4.46 -67.06 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.04 Total: 11.47 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 4.83 Total: -3.93 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.03 Total: -79.58 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.05 Total: -30.86 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.36 Total: -8.97 kcal Total: -71.52 4.46 -67.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718340519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.689 kcal (2) G-P(sol) polarization free energy of solvation -71.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds