Wall clock time and date at job start Mon Mar 30 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46702 * 2 1 4 4 N 1.46500 * 109.47297 * 119.99728 * 2 1 3 5 5 C 1.37096 * 120.00338 * 286.67753 * 4 2 1 6 6 H 1.07999 * 119.99700 * 185.89803 * 5 4 2 7 7 C 1.38951 * 119.99794 * 5.90361 * 5 4 2 8 8 N 1.31413 * 119.99965 * 19.40252 * 7 5 4 9 9 Si 1.86800 * 119.99587 * 199.40825 * 7 5 4 10 10 H 1.48503 * 109.47100 * 90.00090 * 9 7 5 11 11 H 1.48501 * 109.46905 * 209.99364 * 9 7 5 12 12 H 1.48495 * 109.47387 * 329.99888 * 9 7 5 13 13 C 1.34780 * 119.99703 * 106.67997 * 4 2 1 14 14 O 1.21294 * 119.99735 * 186.51874 * 13 4 2 15 15 C 1.50697 * 120.00057 * 6.51408 * 13 4 2 16 16 C 1.53873 * 113.59912 * 272.59949 * 15 13 4 17 17 C 1.53499 * 86.87122 * 220.37952 * 16 15 13 18 18 C 1.52591 * 120.61503 * 149.62597 * 17 16 15 19 19 S 1.81489 * 89.77364 * 93.85867 * 18 17 16 20 20 C 1.52598 * 120.49634 * 260.60577 * 17 16 15 21 21 C 1.53331 * 87.60102 * 25.08927 * 17 16 15 22 22 H 1.08999 * 109.46937 * 265.96436 * 1 2 3 23 23 H 1.08996 * 109.47611 * 25.96434 * 1 2 3 24 24 H 1.09002 * 109.47141 * 145.96762 * 1 2 3 25 25 H 1.08999 * 109.47043 * 240.00337 * 2 1 3 26 26 H 1.08997 * 109.47115 * 214.54070 * 3 2 1 27 27 H 1.08991 * 109.47183 * 334.54369 * 3 2 1 28 28 H 1.08999 * 109.46987 * 94.54492 * 3 2 1 29 29 H 0.96996 * 119.99437 * 180.02562 * 8 7 5 30 30 H 1.09005 * 112.83592 * 43.73718 * 15 13 4 31 31 H 1.08998 * 113.63764 * 334.85875 * 16 15 13 32 32 H 1.09002 * 113.63912 * 105.84433 * 16 15 13 33 33 H 1.08993 * 113.16681 * 209.08925 * 18 17 16 34 34 H 1.09005 * 113.16020 * 338.63039 * 18 17 16 35 35 H 1.08992 * 113.16725 * 21.26735 * 20 17 16 36 36 H 1.09000 * 113.16537 * 150.76778 * 20 17 16 37 37 H 1.09004 * 113.63375 * 220.39851 * 21 17 16 38 38 H 1.08994 * 113.71578 * 89.43770 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.9256 -0.0855 2.4229 6 1 2.3704 -0.5515 3.2898 7 6 1.2594 1.1271 2.5509 8 7 0.4078 1.5097 1.6260 9 14 1.5743 2.2134 4.0376 10 1 2.6940 3.1433 3.7429 11 1 0.3504 2.9951 4.3476 12 1 1.9290 1.3655 5.2040 13 6 2.5588 -1.9207 1.0906 14 8 2.8544 -2.5410 2.0902 15 6 2.7958 -2.5255 -0.2692 16 6 1.5804 -3.2886 -0.8242 17 6 2.5779 -4.3392 -1.3317 18 6 2.1718 -5.8057 -1.4446 19 16 1.7231 -5.5402 -3.1830 20 6 3.0267 -4.3400 -2.7902 21 6 3.5305 -3.8766 -0.2228 22 1 -0.3633 -0.0723 1.0251 23 1 -0.3634 0.9239 -0.4499 24 1 -0.3633 -0.8517 -0.5752 25 1 1.8933 -0.5138 -0.8900 26 1 2.9591 1.5030 -0.5827 27 1 1.2862 2.0943 -0.4417 28 1 2.2377 1.7580 1.0244 29 1 -0.0569 2.3564 1.7152 30 1 3.2274 -1.8181 -0.9774 31 1 0.9084 -3.6616 -0.0514 32 1 1.0586 -2.7591 -1.6214 33 1 3.0080 -6.4932 -1.3177 34 1 1.3193 -6.0641 -0.8163 35 1 2.8862 -3.3779 -3.2826 36 1 4.0323 -4.7370 -2.9292 37 1 4.5724 -3.8186 -0.5379 38 1 3.4015 -4.4122 0.7176 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718340866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:36 Heat of formation + Delta-G solvation = 63.967166 kcal Electronic energy + Delta-G solvation = -19680.741545 eV Core-core repulsion = 16846.419988 eV Total energy + Delta-G solvation = -2834.321557 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12108 -38.13206 -35.84966 -32.46369 -31.62451 -30.35850 -26.41470 -26.07569 -25.55690 -25.42238 -23.02319 -20.79987 -18.86256 -18.06589 -16.73552 -16.40991 -16.23069 -15.08884 -14.94026 -14.68557 -14.11380 -13.60050 -13.29646 -13.10677 -13.02144 -12.46567 -12.28093 -12.07525 -11.94960 -11.72224 -11.61503 -11.15465 -10.95334 -10.77328 -10.59545 -10.42007 -10.34873 -10.14480 -9.98319 -9.79055 -9.69196 -9.42550 -8.58614 -8.28271 -7.77983 -7.45092 -6.07660 -3.80927 1.80583 1.94475 3.13281 3.25116 3.29617 3.80831 4.08694 4.24467 4.42209 4.81794 4.90949 4.97301 5.05366 5.25580 5.29874 5.41088 5.50982 5.60730 5.71914 5.83912 6.01342 6.07525 6.15652 6.27346 6.41187 6.54087 6.55665 6.68894 6.95787 7.02081 7.22621 7.30475 7.59297 7.74130 8.01049 8.15856 8.53251 9.17814 9.46313 9.99227 10.61239 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.036531 B = 0.005251 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.294992 B = 5331.003152 C = 5714.737282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.160 3.840 3 C -0.125 4.125 4 N -0.441 5.441 5 C -0.295 4.295 6 H 0.103 0.897 7 C 0.018 3.982 8 N -0.858 5.858 9 Si 0.918 3.082 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.454 3.546 14 O -0.593 6.593 15 C -0.123 4.123 16 C -0.084 4.084 17 C -0.096 4.096 18 C -0.063 4.063 19 S -0.309 6.309 20 C -0.054 4.054 21 C -0.091 4.091 22 H 0.100 0.900 23 H 0.044 0.956 24 H -0.013 1.013 25 H 0.047 0.953 26 H -0.005 1.005 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.261 0.739 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -5.978 -7.961 10.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.056 3.944 3 C -0.182 4.182 4 N -0.159 5.159 5 C -0.423 4.423 6 H 0.121 0.879 7 C -0.183 4.183 8 N -0.499 5.499 9 Si 0.746 3.254 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.196 1.196 13 C 0.242 3.758 14 O -0.479 6.479 15 C -0.145 4.145 16 C -0.122 4.122 17 C -0.098 4.098 18 C -0.211 4.211 19 S -0.082 6.082 20 C -0.202 4.202 21 C -0.132 4.132 22 H 0.118 0.882 23 H 0.063 0.937 24 H 0.005 0.995 25 H 0.065 0.935 26 H 0.014 0.986 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.004 -6.555 -8.577 10.979 hybrid contribution 0.680 1.065 1.188 1.734 sum 2.684 -5.490 -7.389 9.589 Atomic orbital electron populations 1.22240 0.94276 0.96065 1.03327 1.20724 0.95629 0.92818 0.85203 1.22456 0.96075 0.96166 1.03550 1.44074 1.51384 1.13337 1.07144 1.19718 1.32833 1.02528 0.87217 0.87888 1.25068 0.95732 0.98668 0.98792 1.70990 1.23502 1.21517 1.33920 0.86037 0.77792 0.80053 0.81558 1.20470 1.21094 1.19603 1.19657 0.84159 0.82342 0.89617 1.90495 1.57574 1.61419 1.38381 1.22482 0.98280 0.96462 0.97228 1.22670 0.95239 0.94280 0.99979 1.22622 1.00091 0.93143 0.93935 1.24260 1.03976 0.99896 0.92973 1.88852 1.50713 1.49475 1.19171 1.24084 0.98785 1.00952 0.96402 1.22721 0.97115 0.95509 0.97817 0.88184 0.93714 0.99468 0.93472 0.98646 0.93252 0.88844 0.92704 0.88425 0.88956 0.90454 0.87840 0.88567 0.88496 0.87696 0.91205 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.19 8.14 37.16 0.30 -1.89 16 2 C 0.16 3.46 3.03 -67.93 -0.21 3.25 16 3 C -0.12 -2.69 8.16 37.16 0.30 -2.39 16 4 N -0.44 -10.71 2.54 -107.73 -0.27 -10.99 16 5 C -0.29 -7.78 8.79 -14.93 -0.13 -7.91 16 6 H 0.10 2.91 7.28 -52.49 -0.38 2.53 16 7 C 0.02 0.44 3.21 -17.47 -0.06 0.38 16 8 N -0.86 -20.53 5.15 55.50 0.29 -20.25 16 9 Si 0.92 19.85 29.60 -169.99 -5.03 14.82 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 C 0.45 10.51 7.13 -10.99 -0.08 10.43 16 14 O -0.59 -15.71 15.49 5.55 0.09 -15.62 16 15 C -0.12 -2.12 2.75 -90.87 -0.25 -2.37 16 16 C -0.08 -1.29 7.28 -26.02 -0.19 -1.48 16 17 C -0.10 -1.23 0.94 -154.49 -0.14 -1.37 16 18 C -0.06 -0.74 7.69 36.95 0.28 -0.45 16 19 S -0.31 -4.02 24.79 -107.50 -2.66 -6.69 16 20 C -0.05 -0.61 7.69 36.95 0.28 -0.32 16 21 C -0.09 -1.34 7.15 -26.11 -0.19 -1.52 16 22 H 0.10 2.50 5.74 -51.93 -0.30 2.20 16 23 H 0.04 0.94 6.93 -51.93 -0.36 0.58 16 24 H -0.01 -0.27 8.14 -51.93 -0.42 -0.69 16 25 H 0.05 0.91 5.66 -51.93 -0.29 0.62 16 26 H -0.01 -0.11 8.14 -51.93 -0.42 -0.53 16 27 H 0.05 1.02 6.94 -51.93 -0.36 0.66 16 28 H 0.09 2.24 4.28 -51.93 -0.22 2.02 16 29 H 0.26 6.03 8.31 -40.82 -0.34 5.69 16 30 H 0.10 1.57 7.08 -51.93 -0.37 1.20 16 31 H 0.09 1.55 8.09 -51.93 -0.42 1.13 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.69 7.37 -51.93 -0.38 1.31 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -27.54 303.64 -8.69 -36.23 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.60 Total: 3.56 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -0.07 Total: -5.64 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.01 Total: -31.23 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.09 Total: -15.62 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -2.66 Total: -6.69 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.54 -8.69 -36.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718340866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.195 kcal (2) G-P(sol) polarization free energy of solvation -27.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds