Wall clock time and date at job start Mon Mar 30 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46702 * 2 1 4 4 N 1.46500 * 109.47297 * 119.99728 * 2 1 3 5 5 C 1.37096 * 120.00338 * 286.67753 * 4 2 1 6 6 H 1.07999 * 119.99700 * 185.89803 * 5 4 2 7 7 C 1.38951 * 119.99794 * 5.90361 * 5 4 2 8 8 N 1.31413 * 119.99965 * 19.40252 * 7 5 4 9 9 Si 1.86800 * 119.99587 * 199.40825 * 7 5 4 10 10 H 1.48503 * 109.47100 * 90.00090 * 9 7 5 11 11 H 1.48501 * 109.46905 * 209.99364 * 9 7 5 12 12 H 1.48495 * 109.47387 * 329.99888 * 9 7 5 13 13 C 1.34780 * 119.99703 * 106.67997 * 4 2 1 14 14 O 1.21294 * 119.99735 * 186.51874 * 13 4 2 15 15 C 1.50697 * 120.00057 * 6.51408 * 13 4 2 16 16 C 1.53873 * 113.59912 * 272.59949 * 15 13 4 17 17 C 1.53499 * 86.87122 * 220.37952 * 16 15 13 18 18 C 1.52591 * 120.61503 * 149.62597 * 17 16 15 19 19 S 1.81489 * 89.77364 * 93.85867 * 18 17 16 20 20 C 1.52598 * 120.49634 * 260.60577 * 17 16 15 21 21 C 1.53331 * 87.60102 * 25.08927 * 17 16 15 22 22 H 1.08999 * 109.46937 * 265.96436 * 1 2 3 23 23 H 1.08996 * 109.47611 * 25.96434 * 1 2 3 24 24 H 1.09002 * 109.47141 * 145.96762 * 1 2 3 25 25 H 1.08999 * 109.47043 * 240.00337 * 2 1 3 26 26 H 1.08997 * 109.47115 * 214.54070 * 3 2 1 27 27 H 1.08991 * 109.47183 * 334.54369 * 3 2 1 28 28 H 1.08999 * 109.46987 * 94.54492 * 3 2 1 29 29 H 0.96996 * 119.99437 * 180.02562 * 8 7 5 30 30 H 1.09005 * 112.83592 * 43.73718 * 15 13 4 31 31 H 1.08998 * 113.63764 * 334.85875 * 16 15 13 32 32 H 1.09002 * 113.63912 * 105.84433 * 16 15 13 33 33 H 1.08993 * 113.16681 * 209.08925 * 18 17 16 34 34 H 1.09005 * 113.16020 * 338.63039 * 18 17 16 35 35 H 1.08992 * 113.16725 * 21.26735 * 20 17 16 36 36 H 1.09000 * 113.16537 * 150.76778 * 20 17 16 37 37 H 1.09004 * 113.63375 * 220.39851 * 21 17 16 38 38 H 1.08994 * 113.71578 * 89.43770 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.9256 -0.0855 2.4229 6 1 2.3704 -0.5515 3.2898 7 6 1.2594 1.1271 2.5509 8 7 0.4078 1.5097 1.6260 9 14 1.5743 2.2134 4.0376 10 1 2.6940 3.1433 3.7429 11 1 0.3504 2.9951 4.3476 12 1 1.9290 1.3655 5.2040 13 6 2.5588 -1.9207 1.0906 14 8 2.8544 -2.5410 2.0902 15 6 2.7958 -2.5255 -0.2692 16 6 1.5804 -3.2886 -0.8242 17 6 2.5779 -4.3392 -1.3317 18 6 2.1718 -5.8057 -1.4446 19 16 1.7231 -5.5402 -3.1830 20 6 3.0267 -4.3400 -2.7902 21 6 3.5305 -3.8766 -0.2228 22 1 -0.3633 -0.0723 1.0251 23 1 -0.3634 0.9239 -0.4499 24 1 -0.3633 -0.8517 -0.5752 25 1 1.8933 -0.5138 -0.8900 26 1 2.9591 1.5030 -0.5827 27 1 1.2862 2.0943 -0.4417 28 1 2.2377 1.7580 1.0244 29 1 -0.0569 2.3564 1.7152 30 1 3.2274 -1.8181 -0.9774 31 1 0.9084 -3.6616 -0.0514 32 1 1.0586 -2.7591 -1.6214 33 1 3.0080 -6.4932 -1.3177 34 1 1.3193 -6.0641 -0.8163 35 1 2.8862 -3.3779 -3.2826 36 1 4.0323 -4.7370 -2.9292 37 1 4.5724 -3.8186 -0.5379 38 1 3.4015 -4.4122 0.7176 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718340866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:35 Heat of formation + Delta-G solvation = 50.165265 kcal Electronic energy + Delta-G solvation = -19681.340040 eV Core-core repulsion = 16846.419988 eV Total energy + Delta-G solvation = -2834.920053 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.52327 -39.69526 -37.67029 -33.94876 -33.21162 -32.15895 -27.80120 -27.34927 -27.25371 -26.68787 -24.57898 -22.57297 -20.42652 -19.27758 -18.41512 -18.09626 -17.34850 -16.48697 -16.22746 -16.11148 -15.77203 -15.20442 -14.92858 -14.78350 -14.14220 -13.98577 -13.81130 -13.51097 -13.33732 -13.25938 -13.13953 -12.61778 -12.37814 -12.34589 -12.15559 -12.10055 -11.88342 -11.54420 -11.45207 -11.39884 -11.12723 -10.76404 -10.43160 -10.08881 -9.32913 -8.76868 -7.96830 -5.77095 0.89537 0.99334 1.37803 1.45639 1.54331 2.06564 2.31701 3.04318 3.11846 3.32344 3.36035 3.69046 3.92081 3.94207 4.21241 4.28235 4.44388 4.52081 4.54337 4.68498 4.72974 4.83432 4.83751 4.85253 4.89815 5.06427 5.20942 5.23203 5.27927 5.42873 5.49523 5.55458 5.62684 5.96430 6.13246 6.28867 6.64834 7.27943 7.62714 8.15753 8.69126 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.036531 B = 0.005251 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.294992 B = 5331.003152 C = 5714.737282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.157 3.843 3 C -0.120 4.120 4 N -0.451 5.451 5 C -0.337 4.337 6 H 0.068 0.932 7 C 0.002 3.998 8 N -0.852 5.852 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.276 1.276 12 H -0.284 1.284 13 C 0.440 3.560 14 O -0.639 6.639 15 C -0.123 4.123 16 C -0.083 4.083 17 C -0.081 4.081 18 C -0.055 4.055 19 S -0.348 6.348 20 C -0.038 4.038 21 C -0.085 4.085 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.003 0.997 25 H 0.076 0.924 26 H 0.013 0.987 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.265 0.735 30 H 0.118 0.882 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.095 0.905 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.535 -5.738 -9.987 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 C -0.178 4.178 4 N -0.169 5.169 5 C -0.465 4.465 6 H 0.086 0.914 7 C -0.199 4.199 8 N -0.492 5.492 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.201 1.201 12 H -0.210 1.210 13 C 0.230 3.770 14 O -0.528 6.528 15 C -0.144 4.144 16 C -0.121 4.121 17 C -0.083 4.083 18 C -0.203 4.203 19 S -0.122 6.122 20 C -0.185 4.185 21 C -0.125 4.125 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.021 0.979 25 H 0.094 0.906 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.145 0.855 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.150 0.850 37 H 0.113 0.887 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.618 -6.298 -10.641 12.639 hybrid contribution 0.434 1.009 1.857 2.158 sum 3.052 -5.288 -8.783 10.697 Atomic orbital electron populations 1.22043 0.94473 0.96999 1.01292 1.20901 0.95464 0.93054 0.85207 1.22344 0.97113 0.96155 1.02227 1.44274 1.51532 1.13930 1.07174 1.19477 1.35201 1.04179 0.87654 0.91373 1.25514 0.94884 0.98584 1.00933 1.71096 1.22435 1.21367 1.34277 0.85276 0.78018 0.78405 0.78666 1.19677 1.20077 1.20983 1.20730 0.82911 0.81791 0.91538 1.90453 1.59199 1.62464 1.40707 1.22557 1.00296 0.97640 0.93940 1.22596 0.94851 0.95111 0.99584 1.22394 0.98076 0.93248 0.94553 1.24306 1.04655 0.99497 0.91800 1.89092 1.52111 1.50773 1.20190 1.24144 0.99216 1.00920 0.94267 1.22640 0.98783 0.93456 0.97632 0.91733 0.93150 0.97861 0.90626 0.96807 0.92640 0.91466 0.92309 0.86409 0.91135 0.89593 0.85544 0.88986 0.87523 0.85011 0.88692 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.81 8.14 71.98 0.59 -3.22 16 2 C 0.16 6.59 3.03 44.99 0.14 6.72 16 3 C -0.12 -5.01 8.16 71.98 0.59 -4.43 16 4 N -0.45 -22.22 2.54 -613.13 -1.56 -23.78 16 5 C -0.34 -18.41 8.79 84.04 0.74 -17.67 16 6 H 0.07 4.11 7.28 -2.91 -0.02 4.09 16 7 C 0.00 0.12 3.21 84.93 0.27 0.39 16 8 N -0.85 -40.49 5.15 21.66 0.11 -40.37 16 9 Si 0.97 41.09 29.60 68.60 2.03 43.12 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 C 0.44 20.70 7.13 87.66 0.62 21.33 16 14 O -0.64 -35.32 15.49 -3.07 -0.05 -35.37 16 15 C -0.12 -4.07 2.75 -10.96 -0.03 -4.10 16 16 C -0.08 -2.44 7.28 31.06 0.23 -2.21 16 17 C -0.08 -1.85 0.94 -52.17 -0.05 -1.90 16 18 C -0.05 -1.15 7.69 71.85 0.55 -0.60 16 19 S -0.35 -8.20 24.79 -56.49 -1.40 -9.60 16 20 C -0.04 -0.70 7.69 71.85 0.55 -0.15 16 21 C -0.08 -2.31 7.15 31.00 0.22 -2.09 16 22 H 0.06 3.23 5.74 -2.39 -0.01 3.22 16 23 H 0.05 2.03 6.93 -2.39 -0.02 2.01 16 24 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 25 H 0.08 2.72 5.66 -2.39 -0.01 2.71 16 26 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 2.19 6.94 -2.39 -0.02 2.18 16 28 H 0.07 3.18 4.28 -2.39 -0.01 3.17 16 29 H 0.27 11.99 8.31 -92.71 -0.77 11.22 16 30 H 0.12 3.42 7.08 -2.38 -0.02 3.40 16 31 H 0.07 2.37 8.09 -2.39 -0.02 2.35 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 2.11 8.14 -2.38 -0.02 2.10 16 38 H 0.08 2.61 7.37 -2.39 -0.02 2.60 16 Total: -1.00 -61.61 303.64 4.61 -57.01 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.05 Total: 16.92 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 4.42 Total: -7.92 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -1.45 Total: -64.15 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.05 Total: -35.37 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.40 Total: -9.60 kcal Total: -61.61 4.61 -57.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718340866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.171 kcal (2) G-P(sol) polarization free energy of solvation -61.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds