Wall clock time and date at job start Mon Mar 30 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 N 1.46497 * 109.47279 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00297 * 275.82082 * 4 3 2 6 6 H 1.07997 * 120.00268 * 146.90617 * 5 4 3 7 7 C 1.38949 * 119.99397 * 326.89751 * 5 4 3 8 8 N 1.31408 * 120.00506 * 335.40456 * 7 5 4 9 9 Si 1.86799 * 119.99559 * 155.39776 * 7 5 4 10 10 H 1.48507 * 109.47154 * 90.00241 * 9 7 5 11 11 H 1.48500 * 109.47276 * 210.00185 * 9 7 5 12 12 H 1.48501 * 109.47290 * 330.00165 * 9 7 5 13 13 C 1.34779 * 119.99708 * 95.81471 * 4 3 2 14 14 O 1.21296 * 119.99690 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00116 * 359.72461 * 13 4 3 16 16 C 1.53871 * 113.59991 * 279.46728 * 15 13 4 17 17 C 1.53501 * 86.86959 * 220.38095 * 16 15 13 18 18 C 1.52590 * 120.60905 * 149.61790 * 17 16 15 19 19 S 1.81497 * 89.77144 * 93.86734 * 18 17 16 20 20 C 1.52596 * 120.49955 * 260.59905 * 17 16 15 21 21 C 1.53328 * 87.60352 * 25.09099 * 17 16 15 22 22 H 1.08998 * 109.47131 * 299.99995 * 1 2 3 23 23 H 1.09003 * 109.46911 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.47033 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47131 * 240.00005 * 2 1 3 26 26 H 1.09001 * 109.46796 * 119.99728 * 2 1 3 27 27 H 1.08998 * 109.47125 * 60.00001 * 3 2 1 28 28 H 1.09003 * 109.47453 * 299.99930 * 3 2 1 29 29 H 0.96999 * 119.99960 * 180.02562 * 8 7 5 30 30 H 1.08997 * 112.83184 * 50.61015 * 15 13 4 31 31 H 1.08999 * 113.63218 * 334.86542 * 16 15 13 32 32 H 1.09000 * 113.63759 * 105.84366 * 16 15 13 33 33 H 1.09001 * 113.16604 * 209.09282 * 18 17 16 34 34 H 1.09002 * 113.16860 * 338.64280 * 18 17 16 35 35 H 1.09002 * 113.16070 * 21.27437 * 20 17 16 36 36 H 1.08999 * 113.16236 * 150.75964 * 20 17 16 37 37 H 1.09001 * 113.63215 * 220.40307 * 21 17 16 38 38 H 1.08994 * 113.72075 * 89.43241 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1901 1.3223 1.1821 6 1 5.1387 0.8067 1.2062 7 6 3.6639 1.8642 2.3484 8 7 2.8160 2.8660 2.2833 9 14 4.1619 1.1684 4.0089 10 1 5.3597 1.8900 4.5089 11 1 3.0442 1.3377 4.9719 12 1 4.4777 -0.2756 3.8660 13 6 4.1794 1.5607 -1.1604 14 8 5.3923 1.5602 -1.1599 15 6 3.4264 1.6864 -2.4597 16 6 2.9236 0.3415 -3.0129 17 6 3.3301 0.8563 -4.4007 18 6 3.7874 -0.1139 -5.4860 19 16 2.0899 -0.1892 -6.1238 20 6 2.2849 1.4395 -5.3472 21 6 4.3397 1.7697 -3.6952 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6768 1.9564 -0.8900 29 1 2.4490 3.2444 3.0975 30 1 2.6596 2.4605 -2.4309 31 1 3.5074 -0.5151 -2.6762 32 1 1.8496 0.1955 -2.8974 33 1 4.4907 0.3309 -6.1902 34 1 4.1391 -1.0663 -5.0894 35 1 1.3854 1.7808 -4.8348 36 1 2.6910 2.1921 -6.0232 37 1 4.4011 2.7687 -4.1268 38 1 5.3174 1.3111 -3.5477 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718341024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:39 Heat of formation + Delta-G solvation = 5.377048 kcal Electronic energy + Delta-G solvation = -19376.464819 eV Core-core repulsion = 16539.602603 eV Total energy + Delta-G solvation = -2836.862215 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.10631 -37.74194 -35.23419 -32.85540 -32.15095 -31.14665 -26.43960 -26.15543 -25.53769 -25.05845 -22.93791 -20.89977 -18.80258 -18.04710 -16.85695 -16.53624 -16.17781 -15.22959 -15.07548 -14.83297 -14.27043 -13.82675 -13.59799 -13.40794 -13.08531 -12.52602 -12.48021 -12.08513 -12.01625 -11.58239 -11.47972 -11.31136 -11.19277 -11.02243 -10.93687 -10.56193 -10.43010 -10.30764 -10.24112 -10.21520 -9.77995 -9.70520 -8.96628 -8.31599 -7.80498 -7.44983 -6.31286 -3.91697 1.78250 1.92226 3.16533 3.26226 3.31893 3.86411 4.11785 4.24786 4.39291 4.82484 4.89100 4.98474 5.00769 5.24248 5.26727 5.38729 5.48197 5.57907 5.64965 5.67344 5.78228 5.86484 5.98761 6.05412 6.11934 6.21523 6.29731 6.38380 6.46354 6.54572 6.63210 6.69252 6.99397 7.33634 7.62347 8.26092 8.53342 9.21028 9.45569 10.05088 10.70315 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.005423 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.681037 B = 5162.363036 C = 5710.371136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.096 3.904 4 N -0.437 5.437 5 C -0.308 4.308 6 H 0.091 0.909 7 C 0.038 3.962 8 N -0.866 5.866 9 Si 0.912 3.088 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.465 3.535 14 O -0.584 6.584 15 C -0.125 4.125 16 C -0.086 4.086 17 C -0.097 4.097 18 C -0.063 4.063 19 S -0.309 6.309 20 C -0.054 4.054 21 C -0.092 4.092 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.113 0.887 28 H 0.048 0.952 29 H 0.267 0.733 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 -3.109 -10.577 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C -0.028 4.028 4 N -0.154 5.154 5 C -0.436 4.436 6 H 0.109 0.891 7 C -0.166 4.166 8 N -0.504 5.504 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.253 3.747 14 O -0.469 6.469 15 C -0.147 4.147 16 C -0.124 4.124 17 C -0.098 4.098 18 C -0.211 4.211 19 S -0.082 6.082 20 C -0.202 4.202 21 C -0.132 4.132 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.131 0.869 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.119 -3.857 -11.148 12.859 hybrid contribution 0.673 0.437 1.314 1.540 sum -4.446 -3.420 -9.834 11.321 Atomic orbital electron populations 1.21679 0.96601 1.00619 1.01366 1.21933 0.94546 0.99230 1.01907 1.21729 0.82104 0.95121 1.03850 1.43504 1.04600 1.62236 1.05091 1.19401 1.06278 1.34163 0.83784 0.89112 1.25259 0.97368 0.94218 0.99798 1.69900 1.31654 1.19709 1.29137 0.86175 0.78223 0.79902 0.81871 1.20345 1.20828 1.19437 1.20034 0.87817 0.81835 0.84977 1.90501 1.14100 1.55334 1.86922 1.22554 0.99158 0.98674 0.94303 1.22714 1.01651 0.97161 0.90838 1.22630 0.96704 0.96524 0.93966 1.24265 0.94720 1.03263 0.98870 1.88845 1.18059 1.21464 1.79867 1.24081 1.01819 0.95779 0.98494 1.22710 0.97968 0.98846 0.93653 0.92849 0.93325 0.93518 0.92872 0.91780 0.86945 0.93369 0.92297 0.88122 0.89113 0.90315 0.87824 0.88620 0.88483 0.87669 0.91108 0.88014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.14 -2.47 6.22 -26.73 -0.17 -2.64 16 3 C 0.10 2.01 4.88 -4.04 -0.02 1.99 16 4 N -0.44 -10.70 2.56 -114.81 -0.29 -10.99 16 5 C -0.31 -8.40 8.94 -14.93 -0.13 -8.53 16 6 H 0.09 2.61 7.70 -52.49 -0.40 2.21 16 7 C 0.04 0.98 4.97 -17.47 -0.09 0.89 16 8 N -0.87 -22.90 11.29 55.50 0.63 -22.27 16 9 Si 0.91 20.33 29.62 -169.99 -5.03 15.29 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.47 10.90 7.15 -10.98 -0.08 10.82 16 14 O -0.58 -15.82 15.72 5.54 0.09 -15.73 16 15 C -0.13 -2.15 2.86 -90.87 -0.26 -2.41 16 16 C -0.09 -1.25 5.85 -26.02 -0.15 -1.41 16 17 C -0.10 -1.20 0.93 -154.50 -0.14 -1.35 16 18 C -0.06 -0.72 7.69 36.95 0.28 -0.43 16 19 S -0.31 -3.91 24.79 -107.50 -2.66 -6.57 16 20 C -0.05 -0.59 7.69 36.95 0.28 -0.31 16 21 C -0.09 -1.34 7.11 -26.11 -0.19 -1.53 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.90 6.04 -51.93 -0.31 0.59 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.11 2.65 5.33 -51.93 -0.28 2.37 16 28 H 0.05 0.90 6.05 -51.93 -0.31 0.59 16 29 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.10 1.64 7.03 -51.93 -0.37 1.27 16 31 H 0.09 1.42 8.09 -51.93 -0.42 1.00 16 32 H 0.08 1.09 7.60 -51.93 -0.39 0.69 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.67 7.44 -51.93 -0.39 1.28 16 LS Contribution 316.40 15.07 4.77 4.77 Total: -1.00 -29.81 316.40 -8.62 -38.42 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.82 Total: 3.74 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.29 Total: -6.66 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.33 Total: -33.26 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.09 Total: -15.73 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.29 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -2.66 Total: -6.57 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.81 -8.62 -38.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718341024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.802 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds