Wall clock time and date at job start Mon Mar 30 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 N 1.46497 * 109.47279 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00297 * 275.82082 * 4 3 2 6 6 H 1.07997 * 120.00268 * 146.90617 * 5 4 3 7 7 C 1.38949 * 119.99397 * 326.89751 * 5 4 3 8 8 N 1.31408 * 120.00506 * 335.40456 * 7 5 4 9 9 Si 1.86799 * 119.99559 * 155.39776 * 7 5 4 10 10 H 1.48507 * 109.47154 * 90.00241 * 9 7 5 11 11 H 1.48500 * 109.47276 * 210.00185 * 9 7 5 12 12 H 1.48501 * 109.47290 * 330.00165 * 9 7 5 13 13 C 1.34779 * 119.99708 * 95.81471 * 4 3 2 14 14 O 1.21296 * 119.99690 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00116 * 359.72461 * 13 4 3 16 16 C 1.53871 * 113.59991 * 279.46728 * 15 13 4 17 17 C 1.53501 * 86.86959 * 220.38095 * 16 15 13 18 18 C 1.52590 * 120.60905 * 149.61790 * 17 16 15 19 19 S 1.81497 * 89.77144 * 93.86734 * 18 17 16 20 20 C 1.52596 * 120.49955 * 260.59905 * 17 16 15 21 21 C 1.53328 * 87.60352 * 25.09099 * 17 16 15 22 22 H 1.08998 * 109.47131 * 299.99995 * 1 2 3 23 23 H 1.09003 * 109.46911 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.47033 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47131 * 240.00005 * 2 1 3 26 26 H 1.09001 * 109.46796 * 119.99728 * 2 1 3 27 27 H 1.08998 * 109.47125 * 60.00001 * 3 2 1 28 28 H 1.09003 * 109.47453 * 299.99930 * 3 2 1 29 29 H 0.96999 * 119.99960 * 180.02562 * 8 7 5 30 30 H 1.08997 * 112.83184 * 50.61015 * 15 13 4 31 31 H 1.08999 * 113.63218 * 334.86542 * 16 15 13 32 32 H 1.09000 * 113.63759 * 105.84366 * 16 15 13 33 33 H 1.09001 * 113.16604 * 209.09282 * 18 17 16 34 34 H 1.09002 * 113.16860 * 338.64280 * 18 17 16 35 35 H 1.09002 * 113.16070 * 21.27437 * 20 17 16 36 36 H 1.08999 * 113.16236 * 150.75964 * 20 17 16 37 37 H 1.09001 * 113.63215 * 220.40307 * 21 17 16 38 38 H 1.08994 * 113.72075 * 89.43241 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1901 1.3223 1.1821 6 1 5.1387 0.8067 1.2062 7 6 3.6639 1.8642 2.3484 8 7 2.8160 2.8660 2.2833 9 14 4.1619 1.1684 4.0089 10 1 5.3597 1.8900 4.5089 11 1 3.0442 1.3377 4.9719 12 1 4.4777 -0.2756 3.8660 13 6 4.1794 1.5607 -1.1604 14 8 5.3923 1.5602 -1.1599 15 6 3.4264 1.6864 -2.4597 16 6 2.9236 0.3415 -3.0129 17 6 3.3301 0.8563 -4.4007 18 6 3.7874 -0.1139 -5.4860 19 16 2.0899 -0.1892 -6.1238 20 6 2.2849 1.4395 -5.3472 21 6 4.3397 1.7697 -3.6952 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6768 1.9564 -0.8900 29 1 2.4490 3.2444 3.0975 30 1 2.6596 2.4605 -2.4309 31 1 3.5074 -0.5151 -2.6762 32 1 1.8496 0.1955 -2.8974 33 1 4.4907 0.3309 -6.1902 34 1 4.1391 -1.0663 -5.0894 35 1 1.3854 1.7808 -4.8348 36 1 2.6910 2.1921 -6.0232 37 1 4.4011 2.7687 -4.1268 38 1 5.3174 1.3111 -3.5477 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718341024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:39 Heat of formation + Delta-G solvation = -10.697976 kcal Electronic energy + Delta-G solvation = -19377.161884 eV Core-core repulsion = 16539.602603 eV Total energy + Delta-G solvation = -2837.559281 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47475 -39.33341 -37.05558 -34.51527 -33.40481 -32.92939 -27.93842 -27.30511 -26.76282 -26.61385 -24.52754 -22.39265 -20.37685 -19.27777 -18.72197 -18.00259 -17.32125 -16.93222 -16.42784 -16.06758 -15.81752 -15.33096 -15.14187 -14.97527 -14.06324 -13.97357 -13.82504 -13.43853 -13.23279 -13.18154 -13.06673 -12.90423 -12.56183 -12.52882 -12.20335 -12.12228 -12.01149 -11.95694 -11.57515 -11.43244 -11.23487 -10.87529 -10.76731 -10.17480 -9.39323 -8.76161 -8.30216 -5.98804 0.89178 0.99539 1.35930 1.41370 1.53303 2.07915 2.31438 3.01480 3.07256 3.33037 3.34622 3.69025 3.88115 3.94450 4.20362 4.22944 4.42603 4.44514 4.47476 4.52494 4.63898 4.68586 4.74841 4.83295 4.85083 4.89049 5.04544 5.05450 5.18978 5.21927 5.32355 5.42364 5.47146 5.53120 5.69802 6.24153 6.59131 7.23584 7.56468 8.15410 8.69316 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.005423 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.681037 B = 5162.363036 C = 5710.371136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.098 3.902 4 N -0.450 5.450 5 C -0.343 4.343 6 H 0.060 0.940 7 C 0.008 3.992 8 N -0.883 5.883 9 Si 0.971 3.029 10 H -0.279 1.279 11 H -0.267 1.267 12 H -0.270 1.270 13 C 0.452 3.548 14 O -0.634 6.634 15 C -0.126 4.126 16 C -0.081 4.081 17 C -0.081 4.081 18 C -0.055 4.055 19 S -0.342 6.342 20 C -0.040 4.040 21 C -0.088 4.088 22 H 0.047 0.953 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.037 0.963 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.273 0.727 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 -3.054 -11.772 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C -0.025 4.025 4 N -0.168 5.168 5 C -0.471 4.471 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.521 5.521 9 Si 0.795 3.205 10 H -0.205 1.205 11 H -0.192 1.192 12 H -0.195 1.195 13 C 0.242 3.758 14 O -0.521 6.521 15 C -0.147 4.147 16 C -0.118 4.118 17 C -0.083 4.083 18 C -0.203 4.203 19 S -0.115 6.115 20 C -0.188 4.188 21 C -0.128 4.128 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.142 0.858 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.802 -3.802 -12.349 14.602 hybrid contribution 1.230 0.450 1.692 2.140 sum -5.572 -3.352 -10.657 12.484 Atomic orbital electron populations 1.21628 0.93595 1.02187 1.02085 1.21838 0.97028 0.96896 1.01076 1.21799 0.80063 0.97033 1.03604 1.43784 1.06038 1.62147 1.04791 1.19300 1.06304 1.35509 0.85965 0.92206 1.25918 0.97208 0.94014 1.02379 1.69960 1.31961 1.19919 1.30238 0.85293 0.78175 0.78993 0.78055 1.20458 1.19155 1.19468 1.21115 0.87727 0.80232 0.86728 1.90455 1.16468 1.57209 1.87984 1.22599 0.99784 1.00875 0.91447 1.22634 1.02068 0.95081 0.92057 1.22403 0.96375 0.96129 0.93360 1.24301 0.94425 1.03072 0.98544 1.89059 1.19097 1.23236 1.80150 1.24138 1.01593 0.95125 0.97904 1.22646 0.97045 1.00395 0.92706 0.93419 0.91319 0.91546 0.91935 0.94421 0.89455 0.91070 0.91740 0.86538 0.90745 0.88935 0.85768 0.88773 0.87477 0.85310 0.89109 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.98 16 2 C -0.13 -4.57 6.22 30.60 0.19 -4.38 16 3 C 0.10 4.10 4.88 86.38 0.42 4.52 16 4 N -0.45 -22.65 2.56 -635.54 -1.63 -24.28 16 5 C -0.34 -19.43 8.94 84.04 0.75 -18.68 16 6 H 0.06 3.67 7.70 -2.91 -0.02 3.65 16 7 C 0.01 0.40 4.97 84.93 0.42 0.82 16 8 N -0.88 -47.11 11.29 21.66 0.24 -46.87 16 9 Si 0.97 42.29 29.62 68.60 2.03 44.33 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 C 0.45 21.68 7.15 87.66 0.63 22.31 16 14 O -0.63 -35.85 15.72 -3.08 -0.05 -35.90 16 15 C -0.13 -4.19 2.86 -10.95 -0.03 -4.22 16 16 C -0.08 -2.22 5.85 31.06 0.18 -2.04 16 17 C -0.08 -1.80 0.93 -52.17 -0.05 -1.85 16 18 C -0.06 -1.12 7.69 71.85 0.55 -0.57 16 19 S -0.34 -7.71 24.79 -56.49 -1.40 -9.11 16 20 C -0.04 -0.73 7.69 71.85 0.55 -0.17 16 21 C -0.09 -2.43 7.11 31.00 0.22 -2.21 16 22 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 2.06 6.04 -2.39 -0.01 2.04 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.09 4.14 5.33 -2.39 -0.01 4.13 16 28 H 0.07 2.57 6.05 -2.39 -0.01 2.56 16 29 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.12 3.51 7.03 -2.39 -0.02 3.50 16 31 H 0.07 2.31 8.09 -2.39 -0.02 2.29 16 32 H 0.09 2.29 7.60 -2.39 -0.02 2.27 16 33 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.08 2.61 7.44 -2.39 -0.02 2.60 16 Total: -1.00 -67.25 316.40 4.79 -62.46 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 1.04 Total: 18.83 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.55 Total: -9.45 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.38 Total: -71.15 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.05 Total: -35.90 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: -7.71 SS G_CDS: -1.40 Total: -9.11 kcal Total: -67.25 4.79 -62.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718341024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.759 kcal (2) G-P(sol) polarization free energy of solvation -67.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds