Wall clock time and date at job start Mon Mar 30 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48494 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46998 * 179.97438 * 11 10 9 13 13 C 1.34769 * 120.00241 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99850 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00466 * 179.97438 * 13 12 11 16 16 C 1.53860 * 113.59689 * 279.19319 * 15 13 12 17 17 C 1.53501 * 86.87208 * 220.37766 * 16 15 13 18 18 C 1.52592 * 120.61507 * 149.61357 * 17 16 15 19 19 S 1.81501 * 89.76863 * 93.86949 * 18 17 16 20 20 C 1.52592 * 120.49814 * 260.60025 * 17 16 15 21 21 C 1.53328 * 87.60162 * 25.08798 * 17 16 15 22 22 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 24 24 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 25 25 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 26 26 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 27 27 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 28 28 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 29 29 H 0.97010 * 119.99910 * 359.97438 * 12 11 10 30 30 H 1.09007 * 112.83310 * 50.32641 * 15 13 12 31 31 H 1.09001 * 113.63908 * 334.85833 * 16 15 13 32 32 H 1.08997 * 113.64701 * 105.83969 * 16 15 13 33 33 H 1.09004 * 113.16429 * 209.09388 * 18 17 16 34 34 H 1.09000 * 113.16464 * 338.64338 * 18 17 16 35 35 H 1.08999 * 113.16408 * 21.26601 * 20 17 16 36 36 H 1.09002 * 113.16319 * 150.75544 * 20 17 16 37 37 H 1.09000 * 113.64079 * 220.41010 * 21 17 16 38 38 H 1.09000 * 113.72142 * 89.43427 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0018 13 6 1.9830 -7.3713 -0.0030 14 8 0.7906 -7.5929 -0.0030 15 6 2.9622 -8.5168 -0.0042 16 6 3.5335 -8.8373 -1.3964 17 6 3.3958 -10.3189 -1.0193 18 6 3.1268 -11.3717 -2.0905 19 16 4.9106 -11.6775 -2.2275 20 6 4.6063 -11.1093 -0.5309 21 6 2.2911 -9.9009 -0.0416 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.8719 -3.6045 0.8894 26 1 2.8719 -3.6044 -0.8905 27 1 0.8533 -5.0451 0.8886 28 1 0.8538 -5.0445 -0.8914 29 1 3.3859 -5.9234 -0.0021 30 1 3.7247 -8.4223 0.7691 31 1 2.8830 -8.5328 -2.2164 32 1 4.5656 -8.5136 -1.5306 33 1 2.5717 -12.2320 -1.7164 34 1 2.6918 -10.9568 -2.9998 35 1 5.4033 -10.4759 -0.1414 36 1 4.3437 -11.9171 0.1522 37 1 2.3271 -10.4299 0.9107 38 1 1.2948 -9.8917 -0.4837 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718342349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:02 Heat of formation + Delta-G solvation = -35.827635 kcal Electronic energy + Delta-G solvation = -17730.787242 eV Core-core repulsion = 14892.138257 eV Total energy + Delta-G solvation = -2838.648985 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.58546 -39.54772 -36.91282 -35.16874 -33.73363 -32.83238 -28.81061 -27.33231 -26.77632 -25.96357 -24.09275 -22.29422 -20.95549 -19.35897 -18.55560 -18.12628 -17.39361 -16.91297 -16.73406 -16.44697 -16.09279 -15.95569 -15.27313 -15.05186 -14.28454 -14.02582 -13.88561 -13.76914 -13.49621 -13.27698 -13.19298 -12.72463 -12.57584 -12.51959 -12.40016 -12.21860 -11.66225 -11.57813 -11.52381 -11.39486 -11.24548 -10.88651 -10.58940 -10.54842 -10.05432 -8.80640 -8.19445 -6.31163 0.89883 0.97642 1.41923 1.44888 1.52752 1.65941 2.26810 2.43386 3.14258 3.18319 3.28866 3.56227 3.67136 3.92038 4.07399 4.22057 4.24539 4.38995 4.42637 4.50485 4.56269 4.65652 4.70948 4.81174 4.86879 4.95182 5.00929 5.04449 5.14521 5.17528 5.34237 5.47653 5.55102 5.71016 5.84315 6.22255 6.64590 6.86595 7.32247 7.38649 8.92518 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044062 B = 0.002684 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.317887 B =10430.126170 C =10796.246118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.714 5.714 13 C 0.514 3.486 14 O -0.591 6.591 15 C -0.127 4.127 16 C -0.088 4.088 17 C -0.084 4.084 18 C -0.057 4.057 19 S -0.361 6.361 20 C -0.038 4.038 21 C -0.091 4.091 22 H 0.263 0.737 23 H -0.009 1.009 24 H -0.009 1.009 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.416 0.584 30 H 0.146 0.854 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.191 -23.283 -0.080 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.366 5.366 13 C 0.302 3.698 14 O -0.471 6.471 15 C -0.148 4.148 16 C -0.126 4.126 17 C -0.085 4.085 18 C -0.205 4.205 19 S -0.134 6.134 20 C -0.185 4.185 21 C -0.131 4.131 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.010 0.990 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.253 0.747 30 H 0.164 0.836 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.139 0.861 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.116 0.884 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.281 -23.777 -1.023 26.338 hybrid contribution -0.634 1.493 0.477 1.691 sum 10.647 -22.284 -0.545 24.703 Atomic orbital electron populations 1.70104 1.07972 1.27880 1.51656 1.26030 0.95739 1.03581 0.94766 0.85472 0.78197 0.77910 0.79298 1.19024 1.21205 1.18953 1.21669 0.93771 0.92040 1.50538 0.91492 1.18944 0.94473 0.93066 0.94966 1.21587 0.98373 0.91852 1.02099 1.21202 0.92104 0.85856 1.00426 1.46043 1.11084 1.05215 1.74224 1.21217 0.89572 0.84521 0.74524 1.90679 1.19229 1.85412 1.51797 1.22815 0.98328 0.92087 1.01597 1.22707 1.02823 0.92337 0.94737 1.22418 0.95940 0.94457 0.95725 1.24322 0.92346 1.01626 1.02211 1.89341 1.13682 1.91166 1.19237 1.24143 0.99029 1.01725 0.93652 1.22738 0.97399 0.92944 1.00036 0.92802 0.99094 0.99040 0.91309 0.91425 0.93397 0.93558 0.74741 0.83635 0.89956 0.88253 0.86060 0.88756 0.86963 0.85522 0.88440 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.12 13.29 21.45 0.28 -56.83 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.54 -30.07 9.11 25.60 0.23 -29.84 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.10 -3.81 5.27 30.60 0.16 -3.65 16 11 C 0.13 4.41 5.67 86.38 0.49 4.90 16 12 N -0.71 -18.08 5.56 -463.05 -2.57 -20.65 16 13 C 0.51 13.11 7.35 87.66 0.64 13.75 16 14 O -0.59 -20.81 15.90 -3.04 -0.05 -20.86 16 15 C -0.13 -1.86 4.14 -10.96 -0.05 -1.91 16 16 C -0.09 -1.16 7.34 31.05 0.23 -0.94 16 17 C -0.08 -0.94 0.93 -52.17 -0.05 -0.99 16 18 C -0.06 -0.71 7.69 71.85 0.55 -0.16 16 19 S -0.36 -5.95 24.79 -56.49 -1.40 -7.35 16 20 C -0.04 -0.36 7.69 71.85 0.55 0.20 16 21 C -0.09 -1.23 7.11 31.00 0.22 -1.01 16 22 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 25 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.42 7.67 8.47 -92.70 -0.79 6.89 16 30 H 0.15 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.13 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.56 7.44 -2.39 -0.02 1.55 16 Total: -1.00 -71.71 329.05 2.14 -69.57 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.25 Total: 8.63 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 3.60 Total: -18.03 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -2.29 Total: -77.49 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -1.40 Total: -7.35 kcal Total: -71.71 2.14 -69.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718342349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.739 kcal (2) G-P(sol) polarization free energy of solvation -71.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds