Wall clock time and date at job start Mon Mar 30 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31016 * 1 3 3 Si 1.86795 * 119.99869 * 2 1 4 4 H 1.48505 * 109.47051 * 240.00148 * 3 2 1 5 5 H 1.48502 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47095 * 120.00151 * 3 2 1 7 7 C 1.39583 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99916 * 179.97438 * 7 2 1 9 9 N 1.36116 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99997 * 179.97438 * 9 7 2 11 11 O 1.21502 * 119.99510 * 0.02562 * 10 9 7 12 12 C 1.48834 * 119.99974 * 179.97438 * 10 9 7 13 13 O 1.21433 * 120.00075 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99623 * 180.02562 * 12 10 9 15 15 C 1.46497 * 119.99653 * 180.02562 * 14 12 10 16 16 C 1.53786 * 113.61643 * 105.85894 * 15 14 12 17 17 C 1.54049 * 86.98426 * 140.01639 * 16 15 14 18 18 C 1.53002 * 113.62024 * 220.02020 * 17 16 15 19 19 C 1.50697 * 109.47431 * 272.50042 * 18 17 16 20 20 N 1.34773 * 120.00355 * 179.97438 * 19 18 17 21 21 O 1.21283 * 119.99626 * 359.97438 * 19 18 17 22 22 C 1.53781 * 113.61305 * 203.46742 * 15 14 12 23 23 H 0.96997 * 120.00128 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00730 * 359.97438 * 9 7 2 25 25 H 0.96995 * 120.00200 * 359.97438 * 14 12 10 26 26 H 1.09002 * 112.84935 * 334.66222 * 15 14 12 27 27 H 1.08992 * 113.61675 * 254.61383 * 16 15 14 28 28 H 1.09000 * 113.60973 * 25.51671 * 16 15 14 29 29 H 1.08996 * 113.68970 * 89.12734 * 17 16 15 30 30 H 1.08997 * 109.47064 * 32.50151 * 18 17 16 31 31 H 1.09006 * 109.47182 * 152.49563 * 18 17 16 32 32 H 0.97002 * 119.99536 * 359.97438 * 20 19 18 33 33 H 0.96998 * 120.00428 * 179.97438 * 20 19 18 34 34 H 1.08999 * 113.61567 * 334.48111 * 22 15 14 35 35 H 1.08998 * 113.61196 * 105.38466 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.0978 1.6964 -1.2126 5 1 1.2791 2.7465 -0.0006 6 1 3.0979 1.6964 1.2125 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3275 -2.3876 -0.0005 10 6 2.0014 -3.5549 -0.0016 11 8 3.2164 -3.5548 -0.0021 12 6 1.2572 -4.8438 -0.0010 13 8 0.0429 -4.8438 -0.0001 14 7 1.9312 -6.0110 -0.0015 15 6 1.1987 -7.2797 -0.0015 16 6 1.2236 -8.0055 -1.3571 17 6 1.3942 -9.3136 -0.5617 18 6 2.3815 -10.2939 -1.1984 19 6 1.6558 -11.1633 -2.1926 20 7 2.3289 -12.1067 -2.8804 21 8 0.4659 -11.0139 -2.3737 22 6 2.0102 -8.4595 0.5590 23 1 -0.4850 0.8400 -0.0004 24 1 0.3575 -2.3877 0.0002 25 1 2.9011 -6.0110 -0.0027 26 1 0.2010 -7.1924 0.4287 27 1 0.2820 -7.9441 -1.9026 28 1 2.0873 -7.7525 -1.9719 29 1 0.4508 -9.7836 -0.2840 30 1 3.1681 -9.7376 -1.7083 31 1 2.8234 -10.9196 -0.4229 32 1 3.2806 -12.2259 -2.7358 33 1 1.8617 -12.6666 -3.5201 34 1 3.0886 -8.3306 0.4671 35 1 1.7032 -8.7645 1.5594 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718542354.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:21 Heat of formation + Delta-G solvation = -102.547130 kcal Electronic energy + Delta-G solvation = -19763.556077 eV Core-core repulsion = 16375.720703 eV Total energy + Delta-G solvation = -3387.835373 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31464 -39.43432 -38.29236 -36.89036 -34.37950 -33.94814 -33.11252 -31.37075 -29.91927 -26.00739 -25.72294 -24.12702 -22.15183 -20.53997 -19.95765 -19.15154 -18.28445 -17.72396 -16.87834 -16.82042 -16.08881 -15.62067 -15.15356 -14.97217 -14.58219 -14.48682 -13.96836 -13.78434 -13.23224 -12.85692 -12.54096 -12.52203 -12.26119 -11.76615 -11.72555 -11.17196 -11.11447 -10.81925 -10.56333 -10.41131 -10.35651 -10.28544 -10.12690 -9.99079 -9.69487 -8.65173 -8.23915 -8.21000 -6.65454 -3.97937 2.40670 2.47167 3.16312 3.18246 3.19108 3.23376 3.50278 4.07715 4.26067 4.37553 4.44840 4.66560 4.78275 4.91595 5.07474 5.21484 5.21818 5.28644 5.31635 5.66041 5.71724 5.82453 6.05228 6.08121 6.11818 6.38944 6.46477 6.88477 7.01409 7.32180 7.71964 7.91790 7.99912 8.35378 8.66334 8.97875 9.33726 9.86979 10.49392 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.049308 B = 0.003050 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.728492 B = 9178.549238 C = 9299.714398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.031 3.969 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.112 0.888 9 N -0.499 5.499 10 C 0.393 3.607 11 O -0.599 6.599 12 C 0.514 3.486 13 O -0.546 6.546 14 N -0.705 5.705 15 C 0.124 3.876 16 C -0.145 4.145 17 C -0.094 4.094 18 C -0.131 4.131 19 C 0.515 3.485 20 N -0.862 5.862 21 O -0.538 6.538 22 C -0.141 4.141 23 H 0.281 0.719 24 H 0.405 0.595 25 H 0.409 0.591 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.400 0.600 33 H 0.399 0.601 34 H 0.088 0.912 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 -20.146 -1.991 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.133 5.133 10 C 0.178 3.822 11 O -0.488 6.488 12 C 0.298 3.702 13 O -0.423 6.423 14 N -0.357 5.357 15 C 0.018 3.982 16 C -0.184 4.184 17 C -0.113 4.113 18 C -0.171 4.171 19 C 0.300 3.700 20 N -0.426 5.426 21 O -0.414 6.414 22 C -0.180 4.180 23 H 0.091 0.909 24 H 0.240 0.760 25 H 0.245 0.755 26 H 0.132 0.868 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.228 0.772 33 H 0.229 0.771 34 H 0.107 0.893 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.943 -19.716 -1.957 20.420 hybrid contribution 0.591 0.390 -0.292 0.766 sum 5.534 -19.326 -2.249 20.228 Atomic orbital electron populations 1.69478 1.06518 1.29463 1.45235 1.25590 0.95629 1.00476 0.95918 0.85777 0.78866 0.79339 0.79488 1.19391 1.20596 1.19378 1.19829 0.93939 0.81924 1.48034 0.87043 1.41569 1.10510 1.04248 1.56993 1.18998 0.87821 0.84277 0.91126 1.90569 1.12913 1.86678 1.58666 1.20719 0.87554 0.86039 0.75875 1.90685 1.14101 1.88096 1.49369 1.45650 1.10730 1.04408 1.74925 1.22412 0.97483 0.81513 0.96745 1.23580 1.03114 0.94411 0.97287 1.22201 0.98977 0.93632 0.96520 1.21678 0.99393 0.98050 0.97977 1.20816 0.87654 0.80158 0.81351 1.43954 1.13666 1.39232 1.45711 1.90767 1.15513 1.69039 1.66080 1.23429 1.00455 0.95336 0.98733 0.90856 0.75977 0.75503 0.86829 0.90679 0.89841 0.87850 0.88503 0.88572 0.77151 0.77066 0.89333 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.52 13.03 55.53 0.72 -22.80 16 2 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 20.19 29.56 -169.99 -5.02 15.17 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 7 C -0.31 -8.52 9.67 -15.15 -0.15 -8.66 16 8 H 0.11 3.14 7.15 -52.49 -0.38 2.77 16 9 N -0.50 -13.52 5.25 -11.59 -0.06 -13.58 16 10 C 0.39 10.00 7.82 -11.87 -0.09 9.91 16 11 O -0.60 -16.08 16.03 5.36 0.09 -15.99 16 12 C 0.51 11.31 7.87 -11.87 -0.09 11.22 16 13 O -0.55 -13.06 16.09 5.42 0.09 -12.97 16 14 N -0.70 -12.00 5.35 -53.64 -0.29 -12.28 16 15 C 0.12 1.72 4.21 -67.12 -0.28 1.44 16 16 C -0.15 -1.82 7.45 -25.77 -0.19 -2.01 16 17 C -0.09 -0.92 3.16 -89.67 -0.28 -1.21 16 18 C -0.13 -0.92 5.54 -27.88 -0.15 -1.08 16 19 C 0.51 4.70 8.10 -10.99 -0.09 4.61 16 20 N -0.86 -4.48 8.87 31.22 0.28 -4.21 16 21 O -0.54 -7.54 16.59 5.56 0.09 -7.44 16 22 C -0.14 -1.37 7.39 -25.92 -0.19 -1.56 16 23 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 24 H 0.40 11.07 7.35 -40.82 -0.30 10.77 16 25 H 0.41 6.45 8.17 -40.82 -0.33 6.11 16 26 H 0.11 1.75 7.50 -51.93 -0.39 1.36 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.00 7.90 -51.93 -0.41 0.59 16 29 H 0.10 1.13 7.67 -51.93 -0.40 0.74 16 30 H 0.10 0.56 7.85 -51.93 -0.41 0.16 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 0.82 8.83 -40.82 -0.36 0.45 16 33 H 0.40 1.88 8.93 -40.82 -0.36 1.51 16 34 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 310.95 15.07 4.69 4.69 Total: -1.00 -34.47 310.95 -5.20 -39.67 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -4.16 Total: 16.38 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: -1.62 Total: 13.37 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.65 Total: -52.87 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: 0.27 Total: -36.40 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.47 -5.20 -39.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718542354.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.877 kcal (2) G-P(sol) polarization free energy of solvation -34.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds