Wall clock time and date at job start Mon Mar 30 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31016 * 1 3 3 Si 1.86795 * 119.99869 * 2 1 4 4 H 1.48505 * 109.47051 * 240.00148 * 3 2 1 5 5 H 1.48502 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47095 * 120.00151 * 3 2 1 7 7 C 1.39583 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99916 * 179.97438 * 7 2 1 9 9 N 1.36116 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99997 * 179.97438 * 9 7 2 11 11 O 1.21502 * 119.99510 * 0.02562 * 10 9 7 12 12 C 1.48834 * 119.99974 * 179.97438 * 10 9 7 13 13 O 1.21433 * 120.00075 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99623 * 180.02562 * 12 10 9 15 15 C 1.46497 * 119.99653 * 180.02562 * 14 12 10 16 16 C 1.53786 * 113.61643 * 105.85894 * 15 14 12 17 17 C 1.54049 * 86.98426 * 140.01639 * 16 15 14 18 18 C 1.53002 * 113.62024 * 220.02020 * 17 16 15 19 19 C 1.50697 * 109.47431 * 272.50042 * 18 17 16 20 20 N 1.34773 * 120.00355 * 179.97438 * 19 18 17 21 21 O 1.21283 * 119.99626 * 359.97438 * 19 18 17 22 22 C 1.53781 * 113.61305 * 203.46742 * 15 14 12 23 23 H 0.96997 * 120.00128 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00730 * 359.97438 * 9 7 2 25 25 H 0.96995 * 120.00200 * 359.97438 * 14 12 10 26 26 H 1.09002 * 112.84935 * 334.66222 * 15 14 12 27 27 H 1.08992 * 113.61675 * 254.61383 * 16 15 14 28 28 H 1.09000 * 113.60973 * 25.51671 * 16 15 14 29 29 H 1.08996 * 113.68970 * 89.12734 * 17 16 15 30 30 H 1.08997 * 109.47064 * 32.50151 * 18 17 16 31 31 H 1.09006 * 109.47182 * 152.49563 * 18 17 16 32 32 H 0.97002 * 119.99536 * 359.97438 * 20 19 18 33 33 H 0.96998 * 120.00428 * 179.97438 * 20 19 18 34 34 H 1.08999 * 113.61567 * 334.48111 * 22 15 14 35 35 H 1.08998 * 113.61196 * 105.38466 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.0978 1.6964 -1.2126 5 1 1.2791 2.7465 -0.0006 6 1 3.0979 1.6964 1.2125 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3275 -2.3876 -0.0005 10 6 2.0014 -3.5549 -0.0016 11 8 3.2164 -3.5548 -0.0021 12 6 1.2572 -4.8438 -0.0010 13 8 0.0429 -4.8438 -0.0001 14 7 1.9312 -6.0110 -0.0015 15 6 1.1987 -7.2797 -0.0015 16 6 1.2236 -8.0055 -1.3571 17 6 1.3942 -9.3136 -0.5617 18 6 2.3815 -10.2939 -1.1984 19 6 1.6558 -11.1633 -2.1926 20 7 2.3289 -12.1067 -2.8804 21 8 0.4659 -11.0139 -2.3737 22 6 2.0102 -8.4595 0.5590 23 1 -0.4850 0.8400 -0.0004 24 1 0.3575 -2.3877 0.0002 25 1 2.9011 -6.0110 -0.0027 26 1 0.2010 -7.1924 0.4287 27 1 0.2820 -7.9441 -1.9026 28 1 2.0873 -7.7525 -1.9719 29 1 0.4508 -9.7836 -0.2840 30 1 3.1681 -9.7376 -1.7083 31 1 2.8234 -10.9196 -0.4229 32 1 3.2806 -12.2259 -2.7358 33 1 1.8617 -12.6666 -3.5201 34 1 3.0886 -8.3306 0.4671 35 1 1.7032 -8.7645 1.5594 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718542354.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:21 Heat of formation + Delta-G solvation = -132.618713 kcal Electronic energy + Delta-G solvation = -19764.860078 eV Core-core repulsion = 16375.720703 eV Total energy + Delta-G solvation = -3389.139375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.54357 -40.69571 -39.59426 -38.63387 -36.37836 -34.67795 -34.51705 -33.40963 -30.75135 -27.94858 -26.64298 -25.64711 -23.47756 -21.40827 -21.36767 -20.54629 -20.17964 -18.71128 -18.25278 -17.69016 -17.50308 -16.87166 -16.52994 -16.40446 -16.14800 -15.83733 -15.65809 -14.78924 -14.69155 -14.58513 -13.87086 -13.67046 -13.39459 -13.20927 -12.95967 -12.71505 -12.58465 -12.33664 -12.11933 -11.94314 -11.68968 -11.64931 -11.28481 -10.89728 -10.57648 -10.27786 -10.21039 -10.07164 -8.65541 -6.10878 0.61014 1.41148 1.49613 1.54520 1.75083 1.86527 2.30387 2.37615 2.72064 3.15607 3.31275 3.53107 3.61241 3.86915 3.90585 4.02578 4.16263 4.40385 4.65394 4.75087 4.80595 4.86317 4.92493 5.09588 5.15834 5.24942 5.32886 5.59522 5.69168 5.97250 6.19210 6.42482 6.56277 6.83036 7.05519 7.28527 7.45344 7.79886 8.50205 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.049308 B = 0.003050 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.728492 B = 9178.549238 C = 9299.714398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.007 4.007 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.346 4.346 8 H 0.101 0.899 9 N -0.513 5.513 10 C 0.390 3.610 11 O -0.615 6.615 12 C 0.516 3.484 13 O -0.571 6.571 14 N -0.679 5.679 15 C 0.102 3.898 16 C -0.147 4.147 17 C -0.083 4.083 18 C -0.124 4.124 19 C 0.508 3.492 20 N -0.842 5.842 21 O -0.598 6.598 22 C -0.117 4.117 23 H 0.289 0.711 24 H 0.400 0.600 25 H 0.418 0.582 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.132 0.868 32 H 0.419 0.581 33 H 0.403 0.597 34 H 0.114 0.886 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.153 -21.261 -1.747 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.211 4.211 3 Si 0.832 3.168 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.118 0.882 9 N -0.146 5.146 10 C 0.175 3.825 11 O -0.505 6.505 12 C 0.299 3.701 13 O -0.451 6.451 14 N -0.331 5.331 15 C -0.002 4.002 16 C -0.186 4.186 17 C -0.102 4.102 18 C -0.164 4.164 19 C 0.295 3.705 20 N -0.406 5.406 21 O -0.479 6.479 22 C -0.155 4.155 23 H 0.099 0.901 24 H 0.234 0.766 25 H 0.256 0.744 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.150 0.850 32 H 0.250 0.750 33 H 0.233 0.767 34 H 0.132 0.868 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.183 -20.908 -1.721 22.174 hybrid contribution -0.072 0.585 -0.405 0.716 sum 7.111 -20.323 -2.127 21.636 Atomic orbital electron populations 1.69554 1.07918 1.30885 1.45203 1.26582 0.96505 1.03603 0.94374 0.84734 0.77719 0.74640 0.79714 1.18782 1.19206 1.18689 1.19964 0.93734 0.83053 1.50823 0.88156 1.41681 1.10230 1.04902 1.57830 1.19641 0.87895 0.85223 0.89729 1.90533 1.13650 1.87297 1.58997 1.20180 0.87057 0.86267 0.76561 1.90677 1.14888 1.88354 1.51142 1.45626 1.11194 1.03992 1.72300 1.22817 0.97485 0.80998 0.98869 1.23607 1.02244 0.96221 0.96519 1.22044 0.99392 0.93020 0.95782 1.21697 0.98583 0.97674 0.98436 1.21245 0.87051 0.80624 0.81627 1.43811 1.14588 1.37752 1.44447 1.90755 1.18098 1.70946 1.68108 1.23375 1.01167 0.91706 0.99264 0.90112 0.76584 0.74425 0.88876 0.93382 0.88794 0.89356 0.86351 0.85033 0.74975 0.76666 0.86757 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.11 13.03 21.76 0.28 -48.83 16 2 C -0.01 -0.35 5.51 85.14 0.47 0.12 16 3 Si 1.01 41.02 29.56 68.60 2.03 43.04 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.35 -19.66 9.67 84.35 0.82 -18.85 16 8 H 0.10 5.80 7.15 -2.91 -0.02 5.78 16 9 N -0.51 -28.67 5.25 -308.86 -1.62 -30.29 16 10 C 0.39 20.25 7.82 87.08 0.68 20.93 16 11 O -0.62 -33.25 16.03 -3.72 -0.06 -33.31 16 12 C 0.52 23.07 7.87 87.08 0.69 23.76 16 13 O -0.57 -28.14 16.09 -3.51 -0.06 -28.20 16 14 N -0.68 -22.64 5.35 -441.95 -2.37 -25.00 16 15 C 0.10 2.76 4.21 45.52 0.19 2.95 16 16 C -0.15 -3.59 7.45 31.21 0.23 -3.36 16 17 C -0.08 -1.46 3.16 -10.18 -0.03 -1.49 16 18 C -0.12 -1.31 5.54 29.85 0.17 -1.14 16 19 C 0.51 8.28 8.10 87.66 0.71 8.99 16 20 N -0.84 -6.59 8.87 -173.54 -1.54 -8.13 16 21 O -0.60 -16.70 16.59 -3.04 -0.05 -16.75 16 22 C -0.12 -1.91 7.39 31.12 0.23 -1.68 16 23 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16 24 H 0.40 22.76 7.35 -92.71 -0.68 22.08 16 25 H 0.42 12.45 8.17 -92.71 -0.76 11.69 16 26 H 0.09 2.94 7.50 -2.39 -0.02 2.92 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 2.08 7.90 -2.39 -0.02 2.06 16 29 H 0.09 1.88 7.67 -2.39 -0.02 1.86 16 30 H 0.12 0.81 7.85 -2.39 -0.02 0.80 16 31 H 0.13 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.42 0.20 8.83 -92.71 -0.82 -0.61 16 33 H 0.40 3.02 8.93 -92.71 -0.83 2.19 16 34 H 0.11 1.35 8.07 -2.39 -0.02 1.34 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -77.87 310.95 -1.14 -79.01 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -1.91 Total: 38.22 kcal Atomic # 6 Polarization: 26.09 SS G_CDS: 4.15 Total: 30.23 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -5.24 Total: -112.25 kcal Atomic # 8 Polarization: -78.09 SS G_CDS: -0.17 Total: -78.26 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -77.87 -1.14 -79.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718542354.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.610 kcal (2) G-P(sol) polarization free energy of solvation -77.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds