Wall clock time and date at job start Mon Mar 30 2020 04:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00073 * 2 1 4 4 C 1.50706 * 109.47090 * 270.00547 * 3 2 1 5 5 H 1.07999 * 119.99843 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99873 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99670 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00343 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47118 * 89.99843 * 8 6 4 10 10 H 1.48494 * 109.47467 * 210.00343 * 8 6 4 11 11 H 1.48504 * 109.47030 * 330.00457 * 8 6 4 12 12 C 1.34779 * 119.99825 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99574 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99940 * 359.97438 * 12 2 1 15 15 H 1.09001 * 109.47556 * 320.00134 * 14 12 2 16 16 N 1.46905 * 109.46910 * 200.00173 * 14 12 2 17 17 C 1.52998 * 109.47049 * 80.00455 * 14 12 2 18 18 C 1.50698 * 109.47017 * 184.99831 * 17 14 12 19 19 C 1.33644 * 126.03782 * 89.71784 * 18 17 14 20 20 N 1.31791 * 114.49633 * 179.78712 * 19 18 17 21 21 C 1.29025 * 117.12375 * 0.52036 * 20 19 18 22 22 S 1.70975 * 110.17109 * 359.71309 * 21 20 19 23 23 H 1.09006 * 109.46990 * 270.00225 * 1 2 3 24 24 H 1.08999 * 109.47154 * 29.99520 * 1 2 3 25 25 H 1.08994 * 109.47362 * 150.00430 * 1 2 3 26 26 H 1.09000 * 109.47222 * 29.99920 * 3 2 1 27 27 H 1.08991 * 109.47123 * 150.00127 * 3 2 1 28 28 H 0.96994 * 119.99640 * 179.97438 * 7 6 4 29 29 H 1.00901 * 110.99869 * 300.00472 * 16 14 12 30 30 H 1.00896 * 110.99543 * 63.95595 * 16 14 12 31 31 H 1.09001 * 109.47115 * 304.99584 * 17 14 12 32 32 H 1.09003 * 109.47470 * 64.99668 * 17 14 12 33 33 H 1.07993 * 122.74816 * 359.97309 * 19 18 17 34 34 H 1.08001 * 124.91227 * 179.75233 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.3464 3.2569 -2.9128 8 14 3.7339 3.9287 -0.2530 9 1 5.1071 3.5068 0.1235 10 1 3.7498 5.3553 -0.6648 11 1 2.8275 3.7595 0.9111 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 1 0.5222 -2.3935 0.6604 16 7 2.2678 -3.5472 0.4727 17 6 0.9130 -2.7884 -1.4210 18 6 0.0562 -4.0279 -1.4012 19 6 -1.2686 -4.0653 -1.2292 20 7 -1.7892 -5.2758 -1.2561 21 6 -0.9760 -6.2621 -1.4309 22 16 0.6250 -5.6845 -1.5933 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5137 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 3.8232 4.0828 -3.0900 29 1 3.0763 -3.6403 -0.1239 30 1 2.5418 -3.3943 1.4316 31 1 0.3311 -1.9506 -1.8053 32 1 1.7780 -2.9549 -2.0630 33 1 -1.8641 -3.1763 -1.0833 34 1 -1.2650 -7.3020 -1.4697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719055672.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:27 Heat of formation + Delta-G solvation = 14.685646 kcal Electronic energy + Delta-G solvation = -18339.495497 eV Core-core repulsion = 15399.496590 eV Total energy + Delta-G solvation = -2939.998908 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.88957 -39.28404 -35.44816 -35.05773 -32.56270 -31.46697 -28.95500 -27.67008 -26.20128 -25.16676 -23.40201 -21.67341 -19.96553 -18.65717 -18.15175 -17.02797 -16.74747 -16.11326 -15.73343 -15.30575 -14.55895 -14.39026 -14.14530 -13.93090 -13.57844 -13.28697 -12.86899 -12.51524 -12.44753 -12.23613 -11.99200 -11.72256 -11.40788 -11.11360 -10.92656 -10.59404 -10.22078 -9.86082 -9.62607 -9.58358 -9.16294 -8.96930 -8.65331 -8.50200 -7.83289 -6.15166 -4.14619 0.72495 1.39904 1.81305 2.81066 3.13330 3.24092 3.30139 3.31880 3.73230 4.31462 4.33665 4.48678 4.77557 5.01475 5.06010 5.12250 5.20341 5.22924 5.40830 5.45954 5.74054 5.78885 5.90253 6.08149 6.16810 6.58794 6.83498 7.00500 7.19727 7.40151 7.53328 7.68805 8.09876 8.38547 8.76311 8.87676 9.44716 10.98064 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.035519 B = 0.004385 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.121134 B = 6384.457702 C = 6512.880726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.592 5.592 3 C 0.213 3.787 4 C -0.530 4.530 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.474 3.526 13 O -0.543 6.543 14 C 0.080 3.920 15 H 0.101 0.899 16 N -0.820 5.820 17 C -0.035 4.035 18 C -0.184 4.184 19 C 0.018 3.982 20 N -0.471 5.471 21 C -0.008 4.008 22 S 0.153 5.847 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.035 0.965 28 H 0.265 0.735 29 H 0.349 0.651 30 H 0.345 0.655 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.173 0.827 34 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -15.690 5.200 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.323 5.323 3 C 0.092 3.908 4 C -0.569 4.569 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.259 3.741 13 O -0.421 6.421 14 C -0.037 4.037 15 H 0.119 0.881 16 N -0.349 5.349 17 C -0.075 4.075 18 C -0.306 4.306 19 C -0.133 4.133 20 N -0.185 5.185 21 C -0.304 4.304 22 S 0.406 5.594 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.163 0.837 30 H 0.157 0.843 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.190 0.810 34 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -7.780 -16.660 4.854 19.018 hybrid contribution 0.444 2.231 0.840 2.425 sum -7.336 -14.430 5.694 17.160 Atomic orbital electron populations 1.21810 0.80872 1.03302 1.00792 1.47929 1.06347 1.07258 1.70776 1.19697 0.92438 0.80142 0.98484 1.21290 1.37212 1.07257 0.91118 0.90759 1.24858 0.95180 0.97336 0.95583 1.69893 1.41303 1.23572 1.18648 0.86845 0.80088 0.79834 0.82882 1.19934 1.20978 1.19109 1.21572 0.88725 0.86265 0.77567 1.90676 1.13872 1.87158 1.50352 1.21545 0.96907 0.87965 0.97266 0.88132 1.59216 1.24141 1.43445 1.08066 1.20055 0.98806 0.92941 0.95748 1.25741 0.97445 0.98469 1.08949 1.21704 0.91764 0.95495 1.04379 1.66295 1.38022 0.98960 1.15204 1.28279 0.93124 1.03099 1.05947 1.84035 1.11187 0.99330 1.64875 0.93404 0.90236 0.91823 0.95189 0.94670 0.92488 0.83726 0.84259 0.88236 0.89635 0.81046 0.79039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 9.85 59.85 0.59 1.67 16 2 N -0.59 -11.47 2.86 -182.95 -0.52 -11.99 16 3 C 0.21 5.07 4.23 -5.19 -0.02 5.05 16 4 C -0.53 -14.87 9.94 -34.44 -0.34 -15.22 16 5 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 8 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 12 C 0.47 8.91 6.91 -10.99 -0.08 8.83 16 13 O -0.54 -12.47 15.83 5.56 0.09 -12.38 16 14 C 0.08 1.08 2.30 -68.86 -0.16 0.92 16 15 H 0.10 1.22 7.21 -51.93 -0.37 0.85 16 16 N -0.82 -10.27 8.70 -5.65 -0.05 -10.32 16 17 C -0.04 -0.45 5.05 -27.89 -0.14 -0.59 16 18 C -0.18 -2.16 5.58 -35.92 -0.20 -2.36 16 19 C 0.02 0.21 11.25 -19.18 -0.22 -0.01 16 20 N -0.47 -5.85 10.54 -15.75 -0.17 -6.01 16 21 C -0.01 -0.08 12.23 51.58 0.63 0.55 16 22 S 0.15 1.57 23.22 -107.50 -2.50 -0.93 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 25 H 0.06 0.73 4.83 -51.93 -0.25 0.48 16 26 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 27 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 29 H 0.35 4.65 8.58 -39.29 -0.34 4.31 16 30 H 0.34 4.13 9.06 -39.29 -0.36 3.77 16 31 H 0.10 1.26 6.43 -51.93 -0.33 0.92 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.19 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -33.79 303.07 -6.59 -40.38 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.08 Total: 5.70 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.03 Total: 0.85 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.04 Total: -54.78 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.50 Total: -0.93 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.79 -6.59 -40.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719055672.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.064 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds