Wall clock time and date at job start Mon Mar 30 2020 04:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00073 * 2 1 4 4 C 1.50706 * 109.47090 * 270.00547 * 3 2 1 5 5 H 1.07999 * 119.99843 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99873 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99670 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00343 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47118 * 89.99843 * 8 6 4 10 10 H 1.48494 * 109.47467 * 210.00343 * 8 6 4 11 11 H 1.48504 * 109.47030 * 330.00457 * 8 6 4 12 12 C 1.34779 * 119.99825 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99574 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99940 * 359.97438 * 12 2 1 15 15 H 1.09001 * 109.47556 * 320.00134 * 14 12 2 16 16 N 1.46905 * 109.46910 * 200.00173 * 14 12 2 17 17 C 1.52998 * 109.47049 * 80.00455 * 14 12 2 18 18 C 1.50698 * 109.47017 * 184.99831 * 17 14 12 19 19 C 1.33644 * 126.03782 * 89.71784 * 18 17 14 20 20 N 1.31791 * 114.49633 * 179.78712 * 19 18 17 21 21 C 1.29025 * 117.12375 * 0.52036 * 20 19 18 22 22 S 1.70975 * 110.17109 * 359.71309 * 21 20 19 23 23 H 1.09006 * 109.46990 * 270.00225 * 1 2 3 24 24 H 1.08999 * 109.47154 * 29.99520 * 1 2 3 25 25 H 1.08994 * 109.47362 * 150.00430 * 1 2 3 26 26 H 1.09000 * 109.47222 * 29.99920 * 3 2 1 27 27 H 1.08991 * 109.47123 * 150.00127 * 3 2 1 28 28 H 0.96994 * 119.99640 * 179.97438 * 7 6 4 29 29 H 1.00901 * 110.99869 * 300.00472 * 16 14 12 30 30 H 1.00896 * 110.99543 * 63.95595 * 16 14 12 31 31 H 1.09001 * 109.47115 * 304.99584 * 17 14 12 32 32 H 1.09003 * 109.47470 * 64.99668 * 17 14 12 33 33 H 1.07993 * 122.74816 * 359.97309 * 19 18 17 34 34 H 1.08001 * 124.91227 * 179.75233 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.3464 3.2569 -2.9128 8 14 3.7339 3.9287 -0.2530 9 1 5.1071 3.5068 0.1235 10 1 3.7498 5.3553 -0.6648 11 1 2.8275 3.7595 0.9111 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 1 0.5222 -2.3935 0.6604 16 7 2.2678 -3.5472 0.4727 17 6 0.9130 -2.7884 -1.4210 18 6 0.0562 -4.0279 -1.4012 19 6 -1.2686 -4.0653 -1.2292 20 7 -1.7892 -5.2758 -1.2561 21 6 -0.9760 -6.2621 -1.4309 22 16 0.6250 -5.6845 -1.5933 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5137 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 3.8232 4.0828 -3.0900 29 1 3.0763 -3.6403 -0.1239 30 1 2.5418 -3.3943 1.4316 31 1 0.3311 -1.9506 -1.8053 32 1 1.7780 -2.9549 -2.0630 33 1 -1.8641 -3.1763 -1.0833 34 1 -1.2650 -7.3020 -1.4697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719055672.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:27 Heat of formation + Delta-G solvation = -11.899520 kcal Electronic energy + Delta-G solvation = -18340.648317 eV Core-core repulsion = 15399.496590 eV Total energy + Delta-G solvation = -2941.151727 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.15734 -40.32882 -36.85380 -36.45545 -34.65864 -32.43559 -30.73885 -28.72707 -27.49823 -26.35352 -24.77464 -23.19876 -20.81262 -20.08752 -19.20534 -19.01104 -18.08545 -17.42758 -16.93155 -16.52982 -16.25047 -15.58085 -15.31355 -15.00985 -14.76290 -14.58121 -14.39470 -14.05269 -13.72201 -13.58697 -13.32235 -13.15990 -12.75770 -12.66791 -12.42575 -12.07394 -11.92028 -11.76369 -11.21130 -10.84834 -10.47536 -10.04058 -9.91532 -9.63524 -9.43956 -8.35744 -6.40907 -0.11192 0.58147 0.99228 1.31426 1.34767 1.43215 1.63119 2.00628 2.28598 2.30076 2.98778 3.33025 3.59669 3.67178 3.96749 3.97681 4.10989 4.30755 4.46106 4.50916 4.63500 4.72238 4.78412 4.91204 4.93284 5.00325 5.32264 5.43278 5.55716 5.91408 6.20663 6.34498 6.60452 6.63804 6.86150 7.18009 7.32238 8.80968 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.035519 B = 0.004385 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.121134 B = 6384.457702 C = 6512.880726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.600 5.600 3 C 0.220 3.780 4 C -0.535 4.535 5 H 0.031 0.969 6 C 0.012 3.988 7 N -0.944 5.944 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.238 1.238 12 C 0.467 3.533 13 O -0.593 6.593 14 C 0.098 3.902 15 H 0.126 0.874 16 N -0.809 5.809 17 C -0.028 4.028 18 C -0.203 4.203 19 C 0.018 3.982 20 N -0.500 5.500 21 C 0.002 3.998 22 S 0.167 5.833 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.017 0.983 28 H 0.268 0.732 29 H 0.345 0.655 30 H 0.350 0.650 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.187 0.813 34 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.664 -16.659 7.051 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.331 5.331 3 C 0.098 3.902 4 C -0.574 4.574 5 H 0.050 0.950 6 C -0.186 4.186 7 N -0.584 5.584 8 Si 0.769 3.231 9 H -0.203 1.203 10 H -0.201 1.201 11 H -0.162 1.162 12 C 0.253 3.747 13 O -0.475 6.475 14 C -0.019 4.019 15 H 0.144 0.856 16 N -0.337 5.337 17 C -0.068 4.068 18 C -0.325 4.325 19 C -0.133 4.133 20 N -0.214 5.214 21 C -0.294 4.294 22 S 0.420 5.580 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.109 0.891 26 H 0.067 0.933 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.203 0.797 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -9.255 -17.659 6.721 21.040 hybrid contribution 0.855 2.400 0.173 2.554 sum -8.400 -15.258 6.895 18.733 Atomic orbital electron populations 1.22116 0.77657 1.04291 1.03233 1.48042 1.08426 1.06025 1.70563 1.19360 0.92711 0.82767 0.95392 1.21540 1.36738 1.06731 0.92352 0.95043 1.25831 0.95345 0.98970 0.98479 1.70046 1.42682 1.24488 1.21229 0.85735 0.79496 0.77854 0.79978 1.20329 1.20077 1.16161 1.22624 0.88471 0.87650 0.75940 1.90642 1.16307 1.88024 1.52491 1.21535 0.96969 0.84958 0.98429 0.85618 1.59257 1.23896 1.42220 1.08307 1.19891 0.98402 0.93783 0.94768 1.25564 0.97476 0.98620 1.10791 1.21971 0.91816 0.96044 1.03484 1.66368 1.38776 0.99493 1.16789 1.28867 0.92747 1.04168 1.03668 1.84021 1.11209 0.98344 1.64410 0.90070 0.91160 0.89100 0.93254 0.96495 0.92280 0.84223 0.83689 0.88301 0.91303 0.79655 0.75976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.80 9.85 127.77 1.26 3.06 16 2 N -0.60 -22.79 2.86 -851.12 -2.43 -25.22 16 3 C 0.22 10.40 4.23 85.64 0.36 10.77 16 4 C -0.54 -30.77 9.94 25.60 0.25 -30.52 16 5 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 6 C 0.01 0.69 5.47 84.65 0.46 1.16 16 7 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 8 Si 0.95 43.85 27.47 68.60 1.88 45.73 16 9 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 12 C 0.47 17.37 6.91 87.66 0.61 17.97 16 13 O -0.59 -27.78 15.83 -3.03 -0.05 -27.83 16 14 C 0.10 2.51 2.30 44.17 0.10 2.61 16 15 H 0.13 2.64 7.21 -2.39 -0.02 2.63 16 16 N -0.81 -19.19 8.70 -171.80 -1.49 -20.68 16 17 C -0.03 -0.69 5.05 29.85 0.15 -0.54 16 18 C -0.20 -4.39 5.58 24.64 0.14 -4.26 16 19 C 0.02 0.38 11.25 83.66 0.94 1.32 16 20 N -0.50 -11.19 10.54 -203.74 -2.15 -13.34 16 21 C 0.00 0.03 12.23 130.65 1.60 1.63 16 22 S 0.17 3.09 23.22 -56.49 -1.31 1.78 16 23 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.07 1.99 8.07 -2.39 -0.02 1.97 16 25 H 0.09 1.86 4.83 -2.39 -0.01 1.85 16 26 H 0.05 2.14 7.13 -2.39 -0.02 2.12 16 27 H 0.02 0.87 6.85 -2.39 -0.02 0.85 16 28 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.34 9.03 8.58 -89.69 -0.77 8.26 16 30 H 0.35 7.84 9.06 -89.70 -0.81 7.03 16 31 H 0.10 2.41 6.43 -2.39 -0.02 2.40 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -75.48 303.07 0.13 -75.35 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.49 Total: 19.74 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 5.87 Total: 3.21 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -5.78 Total: -117.99 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.05 Total: -27.83 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.31 Total: 1.78 kcal Total: -75.48 0.13 -75.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719055672.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.455 kcal (2) G-P(sol) polarization free energy of solvation -75.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds