Wall clock time and date at job start Mon Mar 30 2020 04:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.50695 * 109.47390 * 89.99689 * 3 2 1 5 5 H 1.08001 * 120.00425 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99997 * 179.97438 * 4 3 2 7 7 N 1.31507 * 119.99974 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99547 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47146 * 90.00221 * 8 6 4 10 10 H 1.48505 * 109.46836 * 209.99793 * 8 6 4 11 11 H 1.48493 * 109.47533 * 329.99811 * 8 6 4 12 12 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00062 * 180.02562 * 12 2 1 14 14 C 1.50700 * 120.00216 * 0.02562 * 12 2 1 15 15 H 1.08998 * 109.46722 * 39.99895 * 14 12 2 16 16 N 1.46898 * 109.47460 * 160.00107 * 14 12 2 17 17 C 1.53002 * 109.47424 * 280.00253 * 14 12 2 18 18 C 1.50692 * 109.47257 * 174.99921 * 17 14 12 19 19 C 1.33643 * 126.03988 * 89.71833 * 18 17 14 20 20 N 1.31783 * 114.49959 * 179.78674 * 19 18 17 21 21 C 1.29028 * 117.12388 * 0.51868 * 20 19 18 22 22 S 1.70971 * 110.16733 * 359.71253 * 21 20 19 23 23 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 24 24 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 25 25 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 26 26 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 27 27 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 28 28 H 0.96998 * 119.99696 * 179.97438 * 7 6 4 29 29 H 1.00904 * 110.99924 * 59.99432 * 16 14 12 30 30 H 1.00898 * 111.00132 * 183.95779 * 16 14 12 31 31 H 1.08999 * 109.46737 * 295.00092 * 17 14 12 32 32 H 1.09000 * 109.47049 * 54.99671 * 17 14 12 33 33 H 1.07995 * 122.74622 * 359.97331 * 19 18 17 34 34 H 1.08005 * 124.91185 * 179.75498 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4207 5 1 2.0981 1.0959 2.2417 6 6 3.1268 2.8776 1.6726 7 7 3.5541 3.6177 0.6730 8 14 3.4386 3.4165 3.4338 9 1 4.7336 2.8590 3.9002 10 1 3.4870 4.8995 3.4965 11 1 2.3434 2.9198 4.3049 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 1 0.5223 -2.3934 -0.6604 16 7 2.2679 -3.5472 -0.4725 17 6 0.9129 -2.7885 1.4210 18 6 0.0562 -4.0280 1.4011 19 6 0.4883 -5.2848 1.5421 20 7 -0.4608 -6.1977 1.4926 21 6 -1.6681 -5.7818 1.3075 22 16 -1.6912 -4.0769 1.1806 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 3.1499 1.1384 -0.5139 27 1 1.6084 2.0284 -0.5139 28 1 4.0309 4.4436 0.8503 29 1 3.0764 -3.6402 0.1241 30 1 1.7680 -4.4208 -0.5431 31 1 1.7779 -2.9548 2.0630 32 1 0.3311 -1.9507 1.8052 33 1 1.5295 -5.5317 1.6877 34 1 -2.5381 -6.4184 1.2428 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719055673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:31 Heat of formation + Delta-G solvation = 13.507418 kcal Electronic energy + Delta-G solvation = -18330.968424 eV Core-core repulsion = 15390.918424 eV Total energy + Delta-G solvation = -2940.050000 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06082 -39.17872 -35.58938 -34.85371 -32.59277 -31.25288 -28.67430 -27.55500 -26.11102 -25.23632 -23.56911 -21.89145 -20.33571 -18.55055 -18.23500 -17.14098 -16.53632 -15.72867 -15.55922 -14.93542 -14.58890 -14.52166 -14.34117 -14.20668 -13.49722 -13.46342 -13.09315 -12.51267 -12.16790 -12.15177 -11.95364 -11.62103 -11.24911 -11.20892 -10.89876 -10.59905 -10.18565 -9.91279 -9.66063 -9.59737 -9.22941 -9.06556 -8.50894 -8.45654 -7.67532 -6.06456 -4.11597 0.43811 1.09413 1.49853 2.57217 3.29071 3.31817 3.35622 3.38543 3.80834 4.09811 4.41243 4.56683 4.68998 4.91121 5.00258 5.03465 5.15144 5.26518 5.30747 5.49924 5.69983 5.78452 5.87119 5.91593 6.15778 6.95148 7.14398 7.43088 7.43242 7.47523 7.52743 7.89577 8.20525 8.37320 8.87108 9.05625 9.53549 11.01642 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.004565 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.787918 B = 6132.454684 C = 6343.113881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.601 5.601 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.513 3.487 13 O -0.527 6.527 14 C 0.082 3.918 15 H 0.097 0.903 16 N -0.823 5.823 17 C -0.079 4.079 18 C -0.207 4.207 19 C 0.026 3.974 20 N -0.468 5.468 21 C 0.009 3.991 22 S 0.130 5.870 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.033 0.967 28 H 0.264 0.736 29 H 0.352 0.648 30 H 0.340 0.660 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.174 0.826 34 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.942 -15.337 0.654 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.333 5.333 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.298 3.702 13 O -0.403 6.403 14 C -0.035 4.035 15 H 0.115 0.885 16 N -0.355 5.355 17 C -0.122 4.122 18 C -0.328 4.328 19 C -0.125 4.125 20 N -0.181 5.181 21 C -0.288 4.288 22 S 0.382 5.618 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.191 0.809 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -12.832 -14.582 -0.164 19.425 hybrid contribution 0.630 -0.329 2.077 2.195 sum -12.202 -14.912 1.913 19.362 Atomic orbital electron populations 1.21736 0.81693 1.02460 1.00645 1.48127 1.06011 1.07749 1.71460 1.19302 0.92616 0.77932 0.97512 1.21407 1.36664 1.06312 0.92209 0.92539 1.24933 0.95346 0.96386 0.97383 1.69929 1.38226 1.14360 1.30723 0.86512 0.78749 0.77617 0.84606 1.20540 1.21111 1.19974 1.19960 0.88006 0.84475 0.77797 1.90667 1.13676 1.86799 1.49182 1.21454 0.96126 0.92305 0.93566 0.88503 1.58516 1.10612 1.08106 1.58243 1.20960 0.98850 0.93126 0.99224 1.26028 0.96621 1.00025 1.10136 1.21791 1.00224 0.86933 1.03555 1.66325 0.99512 1.37351 1.14872 1.28373 0.98986 0.96818 1.04630 1.84141 1.04369 1.07242 1.66027 0.93519 0.92753 0.90493 0.93763 0.94919 0.92673 0.83357 0.84657 0.88719 0.88843 0.80888 0.78532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 9.85 59.85 0.59 1.79 16 2 N -0.60 -12.43 2.86 -182.95 -0.52 -12.95 16 3 C 0.25 6.36 5.16 -5.20 -0.03 6.33 16 4 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.51 10.42 6.92 -10.99 -0.08 10.34 16 13 O -0.53 -13.12 15.83 5.55 0.09 -13.03 16 14 C 0.08 1.19 2.35 -68.86 -0.16 1.02 16 15 H 0.10 1.28 7.21 -51.93 -0.37 0.91 16 16 N -0.82 -11.34 8.94 -5.65 -0.05 -11.39 16 17 C -0.08 -0.98 5.05 -27.89 -0.14 -1.12 16 18 C -0.21 -2.17 5.36 -35.92 -0.19 -2.37 16 19 C 0.03 0.27 10.22 -19.18 -0.20 0.08 16 20 N -0.47 -5.14 10.54 -15.75 -0.17 -5.30 16 21 C 0.01 0.08 12.23 51.58 0.63 0.71 16 22 S 0.13 1.12 23.22 -107.50 -2.50 -1.38 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.67 4.83 -51.93 -0.25 0.42 16 25 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 26 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 27 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.35 4.94 8.58 -39.29 -0.34 4.60 16 30 H 0.34 3.87 7.49 -39.29 -0.29 3.57 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.09 1.17 6.43 -51.93 -0.33 0.84 16 33 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.20 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -33.55 304.16 -6.89 -40.44 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.05 Total: 4.69 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 0.01 Total: 3.43 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.00 Total: -55.32 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.50 Total: -1.38 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.55 -6.89 -40.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719055673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.947 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds