Wall clock time and date at job start Mon Mar 30 2020 04:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.50695 * 109.47390 * 89.99689 * 3 2 1 5 5 H 1.08001 * 120.00425 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99997 * 179.97438 * 4 3 2 7 7 N 1.31507 * 119.99974 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99547 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47146 * 90.00221 * 8 6 4 10 10 H 1.48505 * 109.46836 * 209.99793 * 8 6 4 11 11 H 1.48493 * 109.47533 * 329.99811 * 8 6 4 12 12 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00062 * 180.02562 * 12 2 1 14 14 C 1.50700 * 120.00216 * 0.02562 * 12 2 1 15 15 H 1.08998 * 109.46722 * 39.99895 * 14 12 2 16 16 N 1.46898 * 109.47460 * 160.00107 * 14 12 2 17 17 C 1.53002 * 109.47424 * 280.00253 * 14 12 2 18 18 C 1.50692 * 109.47257 * 174.99921 * 17 14 12 19 19 C 1.33643 * 126.03988 * 89.71833 * 18 17 14 20 20 N 1.31783 * 114.49959 * 179.78674 * 19 18 17 21 21 C 1.29028 * 117.12388 * 0.51868 * 20 19 18 22 22 S 1.70971 * 110.16733 * 359.71253 * 21 20 19 23 23 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 24 24 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 25 25 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 26 26 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 27 27 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 28 28 H 0.96998 * 119.99696 * 179.97438 * 7 6 4 29 29 H 1.00904 * 110.99924 * 59.99432 * 16 14 12 30 30 H 1.00898 * 111.00132 * 183.95779 * 16 14 12 31 31 H 1.08999 * 109.46737 * 295.00092 * 17 14 12 32 32 H 1.09000 * 109.47049 * 54.99671 * 17 14 12 33 33 H 1.07995 * 122.74622 * 359.97331 * 19 18 17 34 34 H 1.08005 * 124.91185 * 179.75498 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4207 5 1 2.0981 1.0959 2.2417 6 6 3.1268 2.8776 1.6726 7 7 3.5541 3.6177 0.6730 8 14 3.4386 3.4165 3.4338 9 1 4.7336 2.8590 3.9002 10 1 3.4870 4.8995 3.4965 11 1 2.3434 2.9198 4.3049 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 1 0.5223 -2.3934 -0.6604 16 7 2.2679 -3.5472 -0.4725 17 6 0.9129 -2.7885 1.4210 18 6 0.0562 -4.0280 1.4011 19 6 0.4883 -5.2848 1.5421 20 7 -0.4608 -6.1977 1.4926 21 6 -1.6681 -5.7818 1.3075 22 16 -1.6912 -4.0769 1.1806 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 3.1499 1.1384 -0.5139 27 1 1.6084 2.0284 -0.5139 28 1 4.0309 4.4436 0.8503 29 1 3.0764 -3.6402 0.1241 30 1 1.7680 -4.4208 -0.5431 31 1 1.7779 -2.9548 2.0630 32 1 0.3311 -1.9507 1.8052 33 1 1.5295 -5.5317 1.6877 34 1 -2.5381 -6.4184 1.2428 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719055673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:30 Heat of formation + Delta-G solvation = -12.320769 kcal Electronic energy + Delta-G solvation = -18332.088418 eV Core-core repulsion = 15390.918424 eV Total energy + Delta-G solvation = -2941.169994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.12805 -40.42575 -36.87048 -36.53750 -34.66692 -32.18204 -30.28432 -28.82816 -27.48150 -26.46567 -25.00261 -23.40010 -21.07889 -20.04137 -19.01919 -18.65838 -18.49070 -17.21839 -16.65329 -16.34352 -16.13371 -15.78685 -15.51649 -15.01024 -14.85156 -14.57495 -14.25959 -13.99906 -13.76119 -13.53001 -13.38552 -13.11843 -12.83607 -12.76028 -12.53682 -12.19543 -12.08933 -11.69362 -10.72472 -10.64442 -10.54784 -10.36591 -9.94192 -9.65476 -9.42237 -8.21694 -6.36551 -0.28295 0.39527 0.79579 1.37343 1.40278 1.49642 1.73870 1.87760 2.25534 2.42797 3.08236 3.37192 3.55675 3.60243 3.86427 3.91425 4.06016 4.23215 4.37172 4.41904 4.67816 4.74512 4.75781 4.96155 5.00519 5.15919 5.23458 5.55625 5.82279 6.00218 6.06153 6.47837 6.70056 6.72793 6.77280 7.28465 7.46462 8.85613 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.004565 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.787918 B = 6132.454684 C = 6343.113881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.607 5.607 3 C 0.259 3.741 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.008 3.992 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.281 1.281 10 H -0.276 1.276 11 H -0.260 1.260 12 C 0.503 3.497 13 O -0.584 6.584 14 C 0.100 3.900 15 H 0.118 0.882 16 N -0.830 5.830 17 C -0.067 4.067 18 C -0.228 4.228 19 C 0.027 3.973 20 N -0.499 5.499 21 C 0.018 3.982 22 S 0.167 5.833 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.072 0.928 26 H -0.004 1.004 27 H 0.025 0.975 28 H 0.267 0.733 29 H 0.349 0.651 30 H 0.356 0.644 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.177 0.823 34 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.357 -16.615 1.688 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.339 5.339 3 C 0.137 3.863 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.569 5.569 8 Si 0.791 3.209 9 H -0.207 1.207 10 H -0.201 1.201 11 H -0.184 1.184 12 C 0.290 3.710 13 O -0.464 6.464 14 C -0.016 4.016 15 H 0.135 0.865 16 N -0.363 5.363 17 C -0.109 4.109 18 C -0.349 4.349 19 C -0.124 4.124 20 N -0.212 5.212 21 C -0.279 4.279 22 S 0.420 5.580 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.014 0.986 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.194 0.806 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -15.320 -15.884 0.864 22.085 hybrid contribution 1.312 0.014 1.696 2.144 sum -14.008 -15.870 2.560 21.322 Atomic orbital electron populations 1.22032 0.78129 1.03977 1.02767 1.48126 1.08228 1.06275 1.71225 1.18770 0.91065 0.80257 0.96169 1.21688 1.36781 1.06500 0.92917 0.92563 1.25858 0.94941 0.96468 1.01868 1.70053 1.38901 1.14854 1.33079 0.85429 0.78659 0.77519 0.79289 1.20746 1.20104 1.18403 1.21027 0.87752 0.86100 0.76099 1.90630 1.16394 1.87808 1.51576 1.21253 0.95598 0.89065 0.95692 0.86454 1.58477 1.10757 1.08769 1.58333 1.20696 0.98910 0.94108 0.97220 1.25772 0.97962 0.99018 1.12150 1.21920 1.00673 0.87024 1.02812 1.66390 1.00385 1.37833 1.16639 1.29000 0.99241 0.97469 1.02180 1.84013 1.02083 1.06877 1.65060 0.91030 0.89373 0.90883 0.98583 0.95738 0.92427 0.83674 0.82846 0.89722 0.88928 0.80566 0.75372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.10 9.85 127.77 1.26 3.35 16 2 N -0.61 -25.30 2.86 -851.13 -2.43 -27.74 16 3 C 0.26 13.93 5.16 85.63 0.44 14.37 16 4 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 5 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.44 5.46 84.66 0.46 0.90 16 7 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 8 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 9 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 12 C 0.50 20.67 6.92 87.66 0.61 21.27 16 13 O -0.58 -30.29 15.83 -3.04 -0.05 -30.33 16 14 C 0.10 2.77 2.35 44.17 0.10 2.87 16 15 H 0.12 2.78 7.21 -2.39 -0.02 2.76 16 16 N -0.83 -22.20 8.94 -171.80 -1.54 -23.73 16 17 C -0.07 -1.55 5.05 29.85 0.15 -1.40 16 18 C -0.23 -4.25 5.36 24.64 0.13 -4.12 16 19 C 0.03 0.52 10.22 83.66 0.86 1.37 16 20 N -0.50 -9.71 10.54 -203.74 -2.15 -11.86 16 21 C 0.02 0.24 12.23 130.65 1.60 1.84 16 22 S 0.17 2.30 23.22 -56.49 -1.31 0.99 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.09 1.92 4.83 -2.38 -0.01 1.91 16 25 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 26 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 27 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 28 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.35 9.83 8.58 -89.69 -0.77 9.06 16 30 H 0.36 7.52 7.49 -89.70 -0.67 6.85 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.09 2.13 6.43 -2.39 -0.02 2.11 16 33 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 34 H 0.23 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -75.18 304.16 0.39 -74.79 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.30 Total: 17.33 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 5.85 Total: 9.99 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -5.83 Total: -119.22 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.05 Total: -30.33 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.31 Total: 0.99 kcal Total: -75.18 0.39 -74.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719055673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.472 kcal (2) G-P(sol) polarization free energy of solvation -75.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds