Wall clock time and date at job start Mon Mar 30 2020 04:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21274 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 2 16 16 H 1.09000 * 109.47076 * 39.99894 * 15 13 12 17 17 N 1.46901 * 109.47033 * 159.99718 * 15 13 12 18 18 C 1.53001 * 109.46967 * 279.99536 * 15 13 12 19 19 C 1.50700 * 109.47082 * 175.00310 * 18 15 13 20 20 C 1.33638 * 126.03623 * 89.71461 * 19 18 15 21 21 N 1.31791 * 114.49527 * 179.78991 * 20 19 18 22 22 C 1.29025 * 117.12608 * 0.52182 * 21 20 19 23 23 S 1.70979 * 110.16794 * 359.71290 * 22 21 20 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 29 29 H 1.00910 * 110.99597 * 59.99760 * 17 15 13 30 30 H 1.00899 * 111.00100 * 183.95357 * 17 15 13 31 31 H 1.08996 * 109.47550 * 295.00306 * 18 15 13 32 32 H 1.09002 * 109.46941 * 55.00278 * 18 15 13 33 33 H 1.07998 * 122.75339 * 359.97438 * 20 19 18 34 34 H 1.07996 * 124.91545 * 179.75796 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 3.4549 -1.4086 3.3115 17 7 3.1503 0.2585 4.5530 18 6 1.5048 -1.5243 4.2195 19 6 2.0334 -2.3314 5.3772 20 6 2.1098 -1.9260 6.6483 21 7 2.6074 -2.8207 7.4782 22 6 2.9645 -3.9544 6.9762 23 16 2.6670 -3.9734 5.2925 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7089 1.1613 -3.4844 28 1 2.2491 -1.6318 1.1527 29 1 2.4211 0.9009 4.8250 30 1 3.5514 -0.1958 5.3597 31 1 0.7378 -0.8369 4.5761 32 1 1.0743 -2.1948 3.4757 33 1 1.7874 -0.9466 6.9697 34 1 3.3891 -4.7730 7.5381 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719056973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:30 Heat of formation + Delta-G solvation = -23.629041 kcal Electronic energy + Delta-G solvation = -18050.968249 eV Core-core repulsion = 15109.307891 eV Total energy + Delta-G solvation = -2941.660357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.01544 -40.39637 -37.10459 -36.33978 -34.29221 -32.16662 -31.06858 -28.91283 -27.33045 -26.39528 -24.46804 -22.55210 -21.07522 -21.02922 -19.15786 -18.92993 -17.96359 -17.19896 -16.66410 -16.20779 -16.03345 -15.81542 -15.36730 -15.00159 -14.85699 -14.48182 -14.34875 -13.90981 -13.86231 -13.52005 -12.99054 -12.92479 -12.79683 -12.65475 -12.27290 -12.13633 -12.09927 -11.08972 -10.79321 -10.60832 -10.54574 -10.35990 -9.94423 -9.74634 -9.61618 -8.16384 -6.33849 -0.28057 0.40396 0.80470 1.45904 1.47052 1.57361 1.75201 1.87720 2.34118 2.56096 3.14238 3.42518 3.57736 3.73954 3.89842 4.03684 4.16067 4.30694 4.40991 4.76466 4.77909 4.79240 4.93284 5.10834 5.16514 5.44767 5.62031 5.69769 5.90956 6.04959 6.11617 6.49429 6.72704 6.74191 6.97726 7.33817 7.56583 8.89842 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.004128 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.680167 B = 6781.334567 C = 7341.998490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.004 1.004 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.703 5.703 13 C 0.505 3.495 14 O -0.588 6.588 15 C 0.097 3.903 16 H 0.113 0.887 17 N -0.831 5.831 18 C -0.064 4.064 19 C -0.226 4.226 20 C 0.026 3.974 21 N -0.499 5.499 22 C 0.017 3.983 23 S 0.160 5.840 24 H 0.065 0.935 25 H 0.013 0.987 26 H 0.042 0.958 27 H 0.265 0.735 28 H 0.404 0.596 29 H 0.350 0.650 30 H 0.355 0.645 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.180 0.820 34 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 -13.109 16.309 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.014 0.986 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.352 5.352 13 C 0.291 3.709 14 O -0.469 6.469 15 C -0.019 4.019 16 H 0.131 0.869 17 N -0.364 5.364 18 C -0.106 4.106 19 C -0.348 4.348 20 C -0.125 4.125 21 N -0.213 5.213 22 C -0.280 4.280 23 S 0.413 5.587 24 H 0.083 0.917 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.239 0.761 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.197 0.803 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.527 -12.614 15.450 20.255 hybrid contribution -0.815 0.129 -0.004 0.825 sum 2.711 -12.486 15.446 20.046 Atomic orbital electron populations 1.21883 0.98134 0.99531 0.99559 1.18338 0.91194 0.91846 0.81950 0.98599 1.21554 1.32555 1.13549 0.90794 0.90784 1.25794 0.94894 0.95545 1.02332 1.70057 1.37093 1.23914 1.24568 0.85351 0.79018 0.78031 0.77979 1.19551 1.21398 1.18802 1.46253 1.65170 1.14138 1.09629 1.21014 0.77413 0.87047 0.85407 1.90628 1.52288 1.18125 1.85813 1.21258 0.97148 0.92965 0.90551 0.86872 1.58456 1.39254 1.19737 1.18996 1.20666 0.97500 0.98028 0.94406 1.25826 1.10346 0.99365 0.99260 1.21948 1.01542 1.00902 0.88130 1.66389 1.14181 1.02223 1.38467 1.28974 1.03008 0.99725 0.96312 1.84131 1.55173 1.10089 1.09311 0.91663 0.96827 0.93887 0.92596 0.76059 0.83534 0.82932 0.89193 0.88778 0.80337 0.75529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 9.26 71.98 0.67 -5.90 16 2 C 0.27 13.83 2.56 44.25 0.11 13.95 16 3 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 4 C -0.55 -28.52 8.73 25.60 0.22 -28.30 16 5 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -52.45 11.32 21.45 0.24 -52.20 16 8 Si 0.97 41.53 29.54 68.60 2.03 43.56 16 9 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 12 N -0.70 -28.06 5.07 -446.08 -2.26 -30.32 16 13 C 0.51 19.37 7.04 87.66 0.62 19.99 16 14 O -0.59 -28.26 15.91 -3.01 -0.05 -28.31 16 15 C 0.10 2.53 3.20 44.17 0.14 2.67 16 16 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 17 N -0.83 -21.22 8.94 -171.79 -1.54 -22.75 16 18 C -0.06 -1.32 5.38 29.85 0.16 -1.16 16 19 C -0.23 -4.06 5.36 24.64 0.13 -3.93 16 20 C 0.03 0.48 10.22 83.65 0.86 1.33 16 21 N -0.50 -9.62 10.54 -203.74 -2.15 -11.77 16 22 C 0.02 0.23 12.23 130.65 1.60 1.83 16 23 S 0.16 2.28 23.22 -56.49 -1.31 0.96 16 24 H 0.06 3.58 6.07 -2.39 -0.01 3.57 16 25 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.40 13.31 8.54 -92.71 -0.79 12.52 16 29 H 0.35 9.16 8.58 -89.69 -0.77 8.39 16 30 H 0.35 7.27 7.49 -89.69 -0.67 6.60 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.18 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.23 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -68.86 306.28 -1.16 -70.02 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -1.08 Total: 29.11 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 4.96 Total: 1.70 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -5.70 Total: -117.05 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.05 Total: -28.31 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.31 Total: 0.96 kcal Total: -68.86 -1.16 -70.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719056973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.395 kcal (2) G-P(sol) polarization free energy of solvation -68.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds