Wall clock time and date at job start Mon Mar 30 2020 04:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47585 * 2 1 4 4 C 1.50696 * 109.47185 * 120.01164 * 2 1 3 5 5 H 1.07995 * 120.00774 * 119.99716 * 4 2 1 6 6 C 1.37883 * 119.99725 * 299.99294 * 4 2 1 7 7 N 1.31514 * 120.00447 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99794 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46784 * 89.99788 * 8 6 4 10 10 H 1.48497 * 109.47297 * 210.00066 * 8 6 4 11 11 H 1.48497 * 109.47195 * 330.00291 * 8 6 4 12 12 N 1.46505 * 109.46810 * 240.00585 * 2 1 3 13 13 C 1.34770 * 120.00284 * 85.00077 * 12 2 1 14 14 O 1.21286 * 119.99886 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00293 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.47060 * 40.00174 * 15 13 12 17 17 N 1.46896 * 109.47239 * 160.00327 * 15 13 12 18 18 C 1.52997 * 109.47212 * 280.00118 * 15 13 12 19 19 C 1.50698 * 109.47721 * 174.99887 * 18 15 13 20 20 C 1.33637 * 126.03770 * 89.70937 * 19 18 15 21 21 N 1.31784 * 114.49904 * 179.79516 * 20 19 18 22 22 C 1.29023 * 117.12386 * 0.52508 * 21 20 19 23 23 S 1.70970 * 110.16993 * 359.71441 * 22 21 20 24 24 H 1.08991 * 109.47333 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46845 * 299.99584 * 1 2 3 26 26 H 1.09002 * 109.46914 * 59.99219 * 1 2 3 27 27 H 0.96993 * 120.00475 * 179.97438 * 7 6 4 28 28 H 0.97004 * 120.00069 * 265.00003 * 12 2 1 29 29 H 1.00907 * 110.99811 * 296.04225 * 17 15 13 30 30 H 1.00900 * 111.00550 * 59.99964 * 17 15 13 31 31 H 1.09000 * 109.47325 * 294.99852 * 18 15 13 32 32 H 1.09008 * 109.47017 * 54.99761 * 18 15 13 33 33 H 1.08006 * 122.75065 * 359.97438 * 20 19 18 34 34 H 1.08009 * 124.91505 * 179.75163 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2397 2.4827 7 7 2.1380 -0.8595 3.5564 8 14 0.6249 1.2788 2.6542 9 1 -0.8027 0.8724 2.6998 10 1 0.9761 1.9948 3.9069 11 1 0.8471 2.1763 1.4922 12 7 2.0183 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8590 1.1588 -2.4114 15 6 2.6498 -0.7283 -3.5876 16 1 2.2155 -1.7270 -3.6337 17 7 2.2612 0.0303 -4.7840 18 6 4.1746 -0.8376 -3.5261 19 6 4.6674 -1.6538 -4.6931 20 6 5.0077 -1.1806 -5.8956 21 7 5.4136 -2.0987 -6.7494 22 6 5.4248 -3.3213 -6.3373 23 16 4.8890 -3.4017 -4.7157 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.9041 -0.5280 4.4374 28 1 2.2489 -1.6317 -1.1529 29 1 1.2574 0.0614 -4.8822 30 1 2.6517 0.9605 -4.7651 31 1 4.6124 0.1597 -3.5696 32 1 4.4668 -1.3224 -2.5945 33 1 4.9570 -0.1312 -6.1463 34 1 5.7291 -4.1709 -6.9306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719056975.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:33 Heat of formation + Delta-G solvation = 6.071985 kcal Electronic energy + Delta-G solvation = -18095.132224 eV Core-core repulsion = 15154.759800 eV Total energy + Delta-G solvation = -2940.372424 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.87135 -39.30912 -35.73180 -34.86570 -32.46575 -31.45304 -30.11773 -27.89854 -25.44832 -25.14722 -23.32004 -20.90510 -20.13983 -19.70312 -18.10226 -17.53619 -16.46766 -16.08472 -15.68443 -15.30637 -14.73378 -14.44254 -14.14375 -13.94153 -13.70607 -13.24958 -13.01710 -12.74956 -12.31010 -12.27402 -11.92360 -11.74292 -11.30151 -11.14863 -10.88985 -10.26637 -9.99628 -9.71808 -9.67651 -9.33585 -9.30665 -8.94164 -8.83496 -8.59133 -8.28579 -6.27215 -4.30389 0.66897 1.29874 1.69598 2.80754 3.03761 3.18035 3.30451 3.33861 3.80668 4.25491 4.29313 4.42955 4.78572 4.98775 5.07761 5.08553 5.18968 5.28405 5.39672 5.75537 5.82761 6.14736 6.22138 6.27853 6.47315 6.75478 6.94613 7.09227 7.17304 7.35422 7.42928 7.65337 8.03699 8.41703 8.66285 8.77855 9.33167 10.84846 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.004306 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.336644 B = 6500.684227 C = 7067.642033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.234 3.766 3 H 0.048 0.952 4 C -0.537 4.537 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.695 5.695 13 C 0.470 3.530 14 O -0.558 6.558 15 C 0.079 3.921 16 H 0.100 0.900 17 N -0.817 5.817 18 C -0.032 4.032 19 C -0.190 4.190 20 C 0.046 3.954 21 N -0.471 5.471 22 C 0.007 3.993 23 S 0.113 5.887 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.268 0.732 28 H 0.396 0.604 29 H 0.345 0.655 30 H 0.348 0.652 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.174 0.826 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -4.585 -16.204 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.131 3.869 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.343 5.343 13 C 0.253 3.747 14 O -0.438 6.438 15 C -0.037 4.037 16 H 0.118 0.882 17 N -0.346 5.346 18 C -0.072 4.072 19 C -0.311 4.311 20 C -0.104 4.104 21 N -0.185 5.185 22 C -0.291 4.291 23 S 0.365 5.635 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.229 0.771 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.191 0.809 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 4.047 -5.038 -16.310 17.544 hybrid contribution -1.092 1.707 0.778 2.171 sum 2.955 -3.332 -15.532 16.157 Atomic orbital electron populations 1.22442 0.99283 1.00855 0.99276 1.19132 0.90162 0.94677 0.82964 0.93431 1.21021 1.33454 1.14493 0.88509 0.90151 1.24831 0.95441 0.96662 0.95530 1.69859 1.44751 1.40049 0.98081 0.86877 0.80555 0.83585 0.77457 1.20296 1.22073 1.18788 1.46317 1.64156 1.13885 1.09909 1.21737 0.78998 0.88091 0.85912 1.90663 1.51968 1.16030 1.85138 1.21537 0.95547 0.98860 0.87791 0.88229 1.59172 1.16856 1.22179 1.36388 1.19996 0.92995 0.99804 0.94450 1.25718 1.08876 0.95552 1.00974 1.21652 1.00214 1.00353 0.88225 1.66318 1.16487 1.00103 1.35556 1.28273 1.05004 0.98426 0.97361 1.84119 1.60550 1.05409 1.13413 0.92787 0.93393 0.94727 0.92213 0.77079 0.84249 0.83782 0.88962 0.89132 0.80924 0.78874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.96 37.16 0.33 -3.16 16 2 C 0.23 5.39 2.15 -69.08 -0.15 5.24 16 3 H 0.05 1.22 6.64 -51.93 -0.34 0.88 16 4 C -0.54 -14.09 9.31 -34.44 -0.32 -14.42 16 5 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 8 Si 0.89 21.40 24.37 -169.99 -4.14 17.26 16 9 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 12 N -0.70 -12.85 5.07 -54.93 -0.28 -13.13 16 13 C 0.47 8.01 7.03 -10.99 -0.08 7.93 16 14 O -0.56 -11.52 15.91 5.55 0.09 -11.43 16 15 C 0.08 0.99 3.14 -68.87 -0.22 0.77 16 16 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 17 N -0.82 -9.49 8.59 -5.66 -0.05 -9.54 16 18 C -0.03 -0.36 5.38 -27.89 -0.15 -0.51 16 19 C -0.19 -2.10 5.61 -35.92 -0.20 -2.30 16 20 C 0.05 0.53 11.13 -19.18 -0.21 0.32 16 21 N -0.47 -5.71 10.54 -15.75 -0.17 -5.88 16 22 C 0.01 0.07 12.23 51.58 0.63 0.70 16 23 S 0.11 1.09 23.22 -107.50 -2.50 -1.41 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.40 6.41 8.54 -40.82 -0.35 6.06 16 29 H 0.34 3.93 9.06 -39.29 -0.36 3.57 16 30 H 0.35 4.14 8.58 -39.29 -0.34 3.80 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 33 H 0.17 1.83 8.06 -52.48 -0.42 1.40 16 34 H 0.19 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 301.77 15.07 4.55 4.55 Total: -1.00 -31.32 301.77 -6.30 -37.62 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.12 Total: 10.43 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -0.46 Total: -3.35 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.28 Total: -53.67 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.26 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.50 Total: -1.41 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.32 -6.30 -37.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719056975.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.695 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds