Wall clock time and date at job start Mon Mar 30 2020 04:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47585 * 2 1 4 4 C 1.50696 * 109.47185 * 120.01164 * 2 1 3 5 5 H 1.07995 * 120.00774 * 119.99716 * 4 2 1 6 6 C 1.37883 * 119.99725 * 299.99294 * 4 2 1 7 7 N 1.31514 * 120.00447 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99794 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46784 * 89.99788 * 8 6 4 10 10 H 1.48497 * 109.47297 * 210.00066 * 8 6 4 11 11 H 1.48497 * 109.47195 * 330.00291 * 8 6 4 12 12 N 1.46505 * 109.46810 * 240.00585 * 2 1 3 13 13 C 1.34770 * 120.00284 * 85.00077 * 12 2 1 14 14 O 1.21286 * 119.99886 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00293 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.47060 * 40.00174 * 15 13 12 17 17 N 1.46896 * 109.47239 * 160.00327 * 15 13 12 18 18 C 1.52997 * 109.47212 * 280.00118 * 15 13 12 19 19 C 1.50698 * 109.47721 * 174.99887 * 18 15 13 20 20 C 1.33637 * 126.03770 * 89.70937 * 19 18 15 21 21 N 1.31784 * 114.49904 * 179.79516 * 20 19 18 22 22 C 1.29023 * 117.12386 * 0.52508 * 21 20 19 23 23 S 1.70970 * 110.16993 * 359.71441 * 22 21 20 24 24 H 1.08991 * 109.47333 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46845 * 299.99584 * 1 2 3 26 26 H 1.09002 * 109.46914 * 59.99219 * 1 2 3 27 27 H 0.96993 * 120.00475 * 179.97438 * 7 6 4 28 28 H 0.97004 * 120.00069 * 265.00003 * 12 2 1 29 29 H 1.00907 * 110.99811 * 296.04225 * 17 15 13 30 30 H 1.00900 * 111.00550 * 59.99964 * 17 15 13 31 31 H 1.09000 * 109.47325 * 294.99852 * 18 15 13 32 32 H 1.09008 * 109.47017 * 54.99761 * 18 15 13 33 33 H 1.08006 * 122.75065 * 359.97438 * 20 19 18 34 34 H 1.08009 * 124.91505 * 179.75163 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2397 2.4827 7 7 2.1380 -0.8595 3.5564 8 14 0.6249 1.2788 2.6542 9 1 -0.8027 0.8724 2.6998 10 1 0.9761 1.9948 3.9069 11 1 0.8471 2.1763 1.4922 12 7 2.0183 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8590 1.1588 -2.4114 15 6 2.6498 -0.7283 -3.5876 16 1 2.2155 -1.7270 -3.6337 17 7 2.2612 0.0303 -4.7840 18 6 4.1746 -0.8376 -3.5261 19 6 4.6674 -1.6538 -4.6931 20 6 5.0077 -1.1806 -5.8956 21 7 5.4136 -2.0987 -6.7494 22 6 5.4248 -3.3213 -6.3373 23 16 4.8890 -3.4017 -4.7157 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.9041 -0.5280 4.4374 28 1 2.2489 -1.6317 -1.1529 29 1 1.2574 0.0614 -4.8822 30 1 2.6517 0.9605 -4.7651 31 1 4.6124 0.1597 -3.5696 32 1 4.4668 -1.3224 -2.5945 33 1 4.9570 -0.1312 -6.1463 34 1 5.7291 -4.1709 -6.9306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719056975.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:33 Heat of formation + Delta-G solvation = -19.343209 kcal Electronic energy + Delta-G solvation = -18096.234309 eV Core-core repulsion = 15154.759800 eV Total energy + Delta-G solvation = -2941.474510 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.06722 -40.35404 -37.18842 -36.23415 -34.41188 -32.35826 -31.82950 -28.83559 -27.25686 -26.28635 -24.45629 -22.49164 -21.19875 -20.95638 -19.21825 -18.87134 -17.91950 -17.55883 -17.12126 -16.42639 -16.05641 -15.62828 -15.33465 -15.12855 -14.90519 -14.72221 -14.46816 -14.15379 -13.75293 -13.67457 -13.32110 -13.15519 -12.81148 -12.62552 -12.16615 -11.99430 -11.65775 -11.30498 -11.22690 -10.88792 -10.52245 -10.13798 -9.92640 -9.77083 -9.70516 -8.39137 -6.45001 -0.12406 0.52659 0.91196 1.25803 1.34405 1.42799 1.62425 2.02054 2.24466 2.41763 2.97218 3.41202 3.56579 3.78529 4.00468 4.04358 4.22853 4.40460 4.42991 4.52261 4.55161 4.68534 4.83519 4.95356 4.97022 5.29773 5.32964 5.40273 5.60700 5.95708 6.12106 6.39418 6.57142 6.81731 6.86131 7.17209 7.37309 8.75931 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.004306 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.336644 B = 6500.684227 C = 7067.642033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.239 3.761 3 H 0.022 0.978 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.937 3.063 9 H -0.261 1.261 10 H -0.293 1.293 11 H -0.264 1.264 12 N -0.695 5.695 13 C 0.472 3.528 14 O -0.593 6.593 15 C 0.096 3.904 16 H 0.117 0.883 17 N -0.808 5.808 18 C -0.027 4.027 19 C -0.205 4.205 20 C 0.040 3.960 21 N -0.503 5.503 22 C 0.012 3.988 23 S 0.139 5.861 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.270 0.730 28 H 0.408 0.592 29 H 0.348 0.652 30 H 0.348 0.652 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.176 0.824 34 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 -5.197 -17.674 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.134 3.866 3 H 0.040 0.960 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.169 4.169 7 N -0.571 5.571 8 Si 0.765 3.235 9 H -0.187 1.187 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.344 5.344 13 C 0.257 3.743 14 O -0.475 6.475 15 C -0.021 4.021 16 H 0.135 0.865 17 N -0.337 5.337 18 C -0.067 4.067 19 C -0.326 4.326 20 C -0.111 4.111 21 N -0.217 5.217 22 C -0.284 4.284 23 S 0.391 5.609 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.243 0.757 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.193 0.807 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.630 -5.676 -17.811 19.043 hybrid contribution -0.880 1.818 1.160 2.329 sum 2.750 -3.858 -16.650 17.311 Atomic orbital electron populations 1.22337 0.97925 1.01671 0.99344 1.18771 0.91133 0.93188 0.83493 0.96047 1.21256 1.32358 1.13614 0.89839 0.92257 1.25531 0.96793 0.99181 0.95434 1.69965 1.46623 1.41869 0.98663 0.86029 0.79823 0.80498 0.77129 1.18676 1.22067 1.18867 1.46162 1.64526 1.14441 1.09234 1.22590 0.77660 0.87665 0.86399 1.90646 1.53278 1.17794 1.85746 1.21504 0.96243 0.98972 0.85360 0.86518 1.59204 1.17139 1.22174 1.35163 1.19901 0.92029 0.99977 0.94839 1.25622 1.09783 0.96619 1.00554 1.21768 1.00146 1.00698 0.88446 1.66361 1.17977 1.01023 1.36292 1.28855 1.03294 0.98609 0.97675 1.84045 1.59908 1.03836 1.13083 0.91597 0.94230 0.93668 0.92062 0.75685 0.83874 0.83804 0.89255 0.89096 0.80738 0.75849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.48 8.96 71.98 0.65 -5.83 16 2 C 0.24 10.87 2.15 44.24 0.10 10.96 16 3 H 0.02 1.10 6.64 -2.39 -0.02 1.09 16 4 C -0.53 -28.03 9.31 25.60 0.24 -27.79 16 5 H 0.06 3.30 7.98 -2.91 -0.02 3.28 16 6 C 0.03 1.68 5.45 84.66 0.46 2.15 16 7 N -0.93 -54.78 13.96 21.45 0.30 -54.49 16 8 Si 0.94 43.88 24.37 68.60 1.67 45.55 16 9 H -0.26 -11.50 6.87 99.48 0.68 -10.82 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 11 H -0.26 -12.29 6.53 99.48 0.65 -11.64 16 12 N -0.69 -24.97 5.07 -446.10 -2.26 -27.23 16 13 C 0.47 15.49 7.03 87.66 0.62 16.11 16 14 O -0.59 -23.97 15.91 -3.05 -0.05 -24.02 16 15 C 0.10 2.22 3.14 44.17 0.14 2.36 16 16 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 17 N -0.81 -17.36 8.59 -171.81 -1.48 -18.84 16 18 C -0.03 -0.57 5.38 29.85 0.16 -0.41 16 19 C -0.20 -4.17 5.61 24.64 0.14 -4.03 16 20 C 0.04 0.86 11.13 83.66 0.93 1.79 16 21 N -0.50 -11.28 10.54 -203.74 -2.15 -13.43 16 22 C 0.01 0.21 12.23 130.66 1.60 1.81 16 23 S 0.14 2.34 23.22 -56.49 -1.31 1.03 16 24 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.04 1.71 3.27 -2.38 -0.01 1.70 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 28 H 0.41 12.69 8.54 -92.71 -0.79 11.89 16 29 H 0.35 7.26 9.06 -89.69 -0.81 6.45 16 30 H 0.35 7.81 8.58 -89.69 -0.77 7.04 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.23 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -66.42 301.77 -1.55 -67.97 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -1.30 Total: 26.34 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 5.02 Total: -2.90 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -5.59 Total: -113.98 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.67 Total: 45.55 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.31 Total: 1.03 kcal Total: -66.42 -1.55 -67.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719056975.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.624 kcal (2) G-P(sol) polarization free energy of solvation -66.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds