Wall clock time and date at job start Mon Mar 30 2020 04:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47577 * 2 1 4 4 C 1.50704 * 109.46760 * 120.00023 * 2 1 3 5 5 H 1.08004 * 120.00234 * 119.99722 * 4 2 1 6 6 C 1.37878 * 120.00304 * 299.99925 * 4 2 1 7 7 N 1.31512 * 119.99345 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00202 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47335 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47014 * 119.99898 * 8 6 4 11 11 H 1.48495 * 109.47410 * 239.99679 * 8 6 4 12 12 N 1.46498 * 109.47034 * 239.99735 * 2 1 3 13 13 C 1.34779 * 120.00101 * 85.00153 * 12 2 1 14 14 O 1.21280 * 119.99574 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99940 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47556 * 320.00134 * 15 13 12 17 17 N 1.46905 * 109.46910 * 200.00173 * 15 13 12 18 18 C 1.52998 * 109.47049 * 80.00455 * 15 13 12 19 19 C 1.50698 * 109.47017 * 184.99831 * 18 15 13 20 20 C 1.33644 * 126.03782 * 89.71784 * 19 18 15 21 21 N 1.31791 * 114.49633 * 179.78712 * 20 19 18 22 22 C 1.29025 * 117.12375 * 0.52036 * 21 20 19 23 23 S 1.70975 * 110.17109 * 359.71309 * 22 21 20 24 24 H 1.09002 * 109.47232 * 300.00105 * 1 2 3 25 25 H 1.08999 * 109.46709 * 60.00084 * 1 2 3 26 26 H 1.08998 * 109.47577 * 180.02562 * 1 2 3 27 27 H 0.97008 * 120.00010 * 180.02562 * 7 6 4 28 28 H 0.97003 * 120.00155 * 265.00204 * 12 2 1 29 29 H 1.00901 * 110.99869 * 300.00472 * 17 15 13 30 30 H 1.00896 * 110.99543 * 63.95595 * 17 15 13 31 31 H 1.09001 * 109.47115 * 304.99584 * 18 15 13 32 32 H 1.09003 * 109.47470 * 64.99668 * 18 15 13 33 33 H 1.07993 * 122.74816 * 359.97309 * 20 19 18 34 34 H 1.08001 * 124.91227 * 179.75233 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3223 -1.1196 4.0079 9 1 3.1472 -2.2864 3.6039 10 1 3.1471 -0.1858 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6499 -0.7287 -3.5874 16 1 3.4563 -1.4079 -3.3108 17 7 3.1510 0.2589 -4.5526 18 6 1.5067 -1.5250 -4.2196 19 6 2.0364 -2.3319 -5.3769 20 6 2.5223 -3.5752 -5.3115 21 7 2.9210 -4.0675 -6.4672 22 6 2.8080 -3.3050 -7.5018 23 16 2.1316 -1.7999 -7.0540 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7094 1.1619 3.4844 28 1 2.2490 -1.6319 -1.1526 29 1 2.4216 0.9007 -4.8249 30 1 3.9485 0.7538 -4.1824 31 1 1.0764 -2.1958 -3.4759 32 1 0.7393 -0.8381 -4.5766 33 1 2.5804 -4.1318 -4.3880 34 1 3.0982 -3.5781 -8.5056 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719056979.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:37 Heat of formation + Delta-G solvation = -2.671454 kcal Electronic energy + Delta-G solvation = -18037.501440 eV Core-core repulsion = 15096.749872 eV Total energy + Delta-G solvation = -2940.751568 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78610 -39.17933 -35.55659 -34.70322 -32.44991 -31.46399 -29.22811 -27.69894 -25.39681 -25.17726 -23.25635 -20.88367 -19.99859 -19.45658 -18.18665 -17.36896 -16.24151 -15.84484 -15.58021 -15.25517 -14.49482 -14.41658 -14.00137 -13.95959 -13.61663 -13.25727 -12.62880 -12.47853 -12.29923 -11.84585 -11.59778 -11.15991 -11.10170 -11.01270 -10.80647 -10.37313 -10.30344 -9.84448 -9.63574 -9.18612 -9.12054 -8.98782 -8.63957 -8.45994 -8.02809 -6.18373 -4.28149 0.69985 1.37487 1.78392 2.80024 3.19175 3.20619 3.28068 3.30555 3.96505 4.29126 4.34043 4.51535 4.87687 5.02118 5.06535 5.14519 5.20931 5.39773 5.51956 5.69698 5.87279 6.13260 6.73733 6.87098 7.01390 7.06869 7.34427 7.41727 7.46702 7.62121 7.67114 7.83180 8.07737 8.54516 8.69406 8.98277 9.39685 10.87513 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.033965 B = 0.003964 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.168391 B = 7062.158441 C = 7511.883864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.702 5.702 13 C 0.469 3.531 14 O -0.558 6.558 15 C 0.077 3.923 16 H 0.101 0.899 17 N -0.820 5.820 18 C -0.031 4.031 19 C -0.186 4.186 20 C 0.019 3.981 21 N -0.471 5.471 22 C -0.007 4.007 23 S 0.151 5.849 24 H 0.090 0.910 25 H 0.013 0.987 26 H 0.027 0.973 27 H 0.264 0.736 28 H 0.389 0.611 29 H 0.347 0.653 30 H 0.347 0.653 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.173 0.827 34 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 -6.162 -16.621 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.350 5.350 13 C 0.251 3.749 14 O -0.438 6.438 15 C -0.040 4.040 16 H 0.119 0.881 17 N -0.349 5.349 18 C -0.072 4.072 19 C -0.308 4.308 20 C -0.132 4.132 21 N -0.185 5.185 22 C -0.304 4.304 23 S 0.404 5.596 24 H 0.109 0.891 25 H 0.032 0.968 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.222 0.778 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.190 0.810 34 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.756 -5.484 -17.633 18.549 hybrid contribution 0.286 -0.690 2.457 2.568 sum 2.042 -6.174 -15.175 16.510 Atomic orbital electron populations 1.22067 0.98378 0.99137 1.00885 1.18772 0.91083 0.93961 0.80185 0.93489 1.21251 1.32507 1.13266 0.90311 0.91995 1.24895 0.94753 0.94932 0.99130 1.69911 1.35869 1.22426 1.23852 0.86387 0.78647 0.79540 0.82510 1.19693 1.20844 1.20821 1.46640 1.64093 1.13529 1.10705 1.21617 0.79190 0.88194 0.85909 1.90664 1.51596 1.16212 1.85287 1.21568 0.97775 0.95123 0.89533 0.88135 1.59200 1.12458 1.22185 1.41032 1.19993 0.96462 0.97359 0.93358 1.25736 1.08158 0.98573 0.98284 1.21734 1.01307 0.93396 0.96800 1.66298 1.18232 1.35383 0.98577 1.28288 1.05236 0.94380 1.02463 1.84005 1.56662 1.17542 1.01438 0.89131 0.96762 0.95406 0.92584 0.77814 0.83931 0.84080 0.88570 0.89920 0.80964 0.79035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.19 16 2 C 0.26 6.46 2.56 -69.08 -0.18 6.28 16 3 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 4 C -0.53 -13.86 8.73 -34.44 -0.30 -14.16 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.55 11.32 55.43 0.63 -23.92 16 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.70 -13.67 5.07 -54.93 -0.28 -13.95 16 13 C 0.47 8.50 7.03 -10.99 -0.08 8.42 16 14 O -0.56 -12.35 15.91 5.56 0.09 -12.27 16 15 C 0.08 1.01 3.14 -68.86 -0.22 0.79 16 16 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 17 N -0.82 -10.14 8.70 -5.65 -0.05 -10.19 16 18 C -0.03 -0.36 5.38 -27.89 -0.15 -0.51 16 19 C -0.19 -2.08 5.58 -35.92 -0.20 -2.28 16 20 C 0.02 0.22 11.25 -19.18 -0.22 0.00 16 21 N -0.47 -5.82 10.54 -15.75 -0.17 -5.99 16 22 C -0.01 -0.07 12.23 51.58 0.63 0.56 16 23 S 0.15 1.48 23.22 -107.50 -2.50 -1.02 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.39 6.50 8.54 -40.82 -0.35 6.15 16 29 H 0.35 4.44 8.58 -39.29 -0.34 4.11 16 30 H 0.35 4.28 9.06 -39.29 -0.36 3.92 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.19 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 308.79 15.07 4.65 4.65 Total: -1.00 -30.74 308.79 -7.35 -38.09 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -4.25 Total: 11.68 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.46 Total: -2.42 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.13 Total: -54.04 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.50 Total: -1.02 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.74 -7.35 -38.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719056979.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.418 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds