Wall clock time and date at job start Mon Mar 30 2020 04:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47577 * 2 1 4 4 C 1.50704 * 109.46760 * 120.00023 * 2 1 3 5 5 H 1.08004 * 120.00234 * 119.99722 * 4 2 1 6 6 C 1.37878 * 120.00304 * 299.99925 * 4 2 1 7 7 N 1.31512 * 119.99345 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00202 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47335 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47014 * 119.99898 * 8 6 4 11 11 H 1.48495 * 109.47410 * 239.99679 * 8 6 4 12 12 N 1.46498 * 109.47034 * 239.99735 * 2 1 3 13 13 C 1.34779 * 120.00101 * 85.00153 * 12 2 1 14 14 O 1.21280 * 119.99574 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99940 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47556 * 320.00134 * 15 13 12 17 17 N 1.46905 * 109.46910 * 200.00173 * 15 13 12 18 18 C 1.52998 * 109.47049 * 80.00455 * 15 13 12 19 19 C 1.50698 * 109.47017 * 184.99831 * 18 15 13 20 20 C 1.33644 * 126.03782 * 89.71784 * 19 18 15 21 21 N 1.31791 * 114.49633 * 179.78712 * 20 19 18 22 22 C 1.29025 * 117.12375 * 0.52036 * 21 20 19 23 23 S 1.70975 * 110.17109 * 359.71309 * 22 21 20 24 24 H 1.09002 * 109.47232 * 300.00105 * 1 2 3 25 25 H 1.08999 * 109.46709 * 60.00084 * 1 2 3 26 26 H 1.08998 * 109.47577 * 180.02562 * 1 2 3 27 27 H 0.97008 * 120.00010 * 180.02562 * 7 6 4 28 28 H 0.97003 * 120.00155 * 265.00204 * 12 2 1 29 29 H 1.00901 * 110.99869 * 300.00472 * 17 15 13 30 30 H 1.00896 * 110.99543 * 63.95595 * 17 15 13 31 31 H 1.09001 * 109.47115 * 304.99584 * 18 15 13 32 32 H 1.09003 * 109.47470 * 64.99668 * 18 15 13 33 33 H 1.07993 * 122.74816 * 359.97309 * 20 19 18 34 34 H 1.08001 * 124.91227 * 179.75233 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3223 -1.1196 4.0079 9 1 3.1472 -2.2864 3.6039 10 1 3.1471 -0.1858 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6499 -0.7287 -3.5874 16 1 3.4563 -1.4079 -3.3108 17 7 3.1510 0.2589 -4.5526 18 6 1.5067 -1.5250 -4.2196 19 6 2.0364 -2.3319 -5.3769 20 6 2.5223 -3.5752 -5.3115 21 7 2.9210 -4.0675 -6.4672 22 6 2.8080 -3.3050 -7.5018 23 16 2.1316 -1.7999 -7.0540 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7094 1.1619 3.4844 28 1 2.2490 -1.6319 -1.1526 29 1 2.4216 0.9007 -4.8249 30 1 3.9485 0.7538 -4.1824 31 1 1.0764 -2.1958 -3.4759 32 1 0.7393 -0.8381 -4.5766 33 1 2.5804 -4.1318 -4.3880 34 1 3.0982 -3.5781 -8.5056 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719056979.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:36 Heat of formation + Delta-G solvation = -26.390345 kcal Electronic energy + Delta-G solvation = -18038.529969 eV Core-core repulsion = 15096.749872 eV Total energy + Delta-G solvation = -2941.780096 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.98103 -40.31461 -37.04781 -36.19607 -34.32439 -32.40092 -31.02604 -28.68196 -27.35718 -26.26603 -24.40185 -22.55448 -21.14921 -20.72555 -19.15742 -18.87096 -17.67027 -17.34811 -16.84461 -16.61019 -16.02316 -15.48685 -15.31026 -14.93213 -14.77017 -14.61203 -14.37610 -13.84599 -13.52821 -13.20732 -13.01864 -12.92298 -12.80663 -12.57114 -12.29497 -12.13474 -11.94660 -11.23538 -11.11095 -10.63377 -10.46680 -10.02857 -9.90048 -9.77177 -9.61329 -8.19219 -6.36777 -0.10303 0.59988 0.99531 1.43197 1.44896 1.56346 1.70042 2.01225 2.34109 2.60791 3.11481 3.41887 3.62165 3.85529 4.02142 4.06121 4.20450 4.50412 4.52593 4.74216 4.78904 4.90317 4.96614 5.08355 5.32680 5.41581 5.59186 5.66872 5.86357 5.97113 6.08870 6.36252 6.71773 6.87501 6.92205 7.30713 7.50537 8.86874 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.033965 B = 0.003964 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.168391 B = 7062.158441 C = 7511.883864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.268 3.732 3 H -0.004 1.004 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.699 5.699 13 C 0.468 3.532 14 O -0.600 6.600 15 C 0.095 3.905 16 H 0.118 0.882 17 N -0.810 5.810 18 C -0.024 4.024 19 C -0.201 4.201 20 C 0.014 3.986 21 N -0.503 5.503 22 C -0.002 4.002 23 S 0.171 5.829 24 H 0.064 0.936 25 H 0.012 0.988 26 H 0.042 0.958 27 H 0.265 0.735 28 H 0.406 0.594 29 H 0.346 0.654 30 H 0.348 0.652 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.183 0.817 34 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.708 -7.964 -17.562 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.795 3.205 9 H -0.183 1.183 10 H -0.211 1.211 11 H -0.205 1.205 12 N -0.347 5.347 13 C 0.253 3.747 14 O -0.482 6.482 15 C -0.022 4.022 16 H 0.135 0.865 17 N -0.338 5.338 18 C -0.065 4.065 19 C -0.323 4.323 20 C -0.137 4.137 21 N -0.217 5.217 22 C -0.298 4.298 23 S 0.424 5.576 24 H 0.083 0.917 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.241 0.759 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.200 0.800 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.550 -7.315 -18.612 20.160 hybrid contribution 0.053 -0.084 2.639 2.641 sum 2.604 -7.399 -15.973 17.795 Atomic orbital electron populations 1.21880 0.98224 0.99535 0.99496 1.18340 0.91163 0.91830 0.82215 0.98589 1.21594 1.32469 1.13519 0.90829 0.90805 1.25786 0.94875 0.95559 1.02342 1.70058 1.37088 1.23949 1.24525 0.85316 0.78098 0.78549 0.78496 1.18303 1.21091 1.20481 1.46386 1.64307 1.14226 1.09814 1.22593 0.77722 0.87739 0.86662 1.90644 1.53210 1.18392 1.86001 1.21542 0.98628 0.95023 0.87041 0.86455 1.59250 1.12323 1.22168 1.40049 1.19894 0.95535 0.97224 0.93831 1.25642 1.09120 0.98686 0.98844 1.21966 1.00928 0.93594 0.97247 1.66355 1.19710 1.36406 0.99260 1.28851 1.03626 0.94048 1.03264 1.83957 1.56075 1.17156 1.00374 0.91743 0.96870 0.93913 0.92595 0.75896 0.84048 0.83949 0.87719 0.90378 0.79981 0.76136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 9.26 71.98 0.67 -5.85 16 2 C 0.27 13.45 2.56 44.25 0.11 13.57 16 3 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 4 C -0.55 -28.15 8.73 25.60 0.22 -27.93 16 5 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.00 11.32 21.45 0.24 -51.76 16 8 Si 0.97 41.35 29.54 68.60 2.03 43.37 16 9 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 N -0.70 -26.86 5.07 -446.09 -2.26 -29.12 16 13 C 0.47 16.79 7.03 87.66 0.62 17.41 16 14 O -0.60 -27.02 15.91 -3.03 -0.05 -27.07 16 15 C 0.09 2.33 3.14 44.17 0.14 2.47 16 16 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 17 N -0.81 -18.87 8.70 -171.80 -1.49 -20.36 16 18 C -0.02 -0.52 5.38 29.85 0.16 -0.36 16 19 C -0.20 -4.09 5.58 24.64 0.14 -3.95 16 20 C 0.01 0.29 11.25 83.66 0.94 1.23 16 21 N -0.50 -11.34 10.54 -203.74 -2.15 -13.49 16 22 C 0.00 -0.03 12.23 130.65 1.60 1.57 16 23 S 0.17 2.97 23.22 -56.49 -1.31 1.65 16 24 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 25 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 28 H 0.41 12.91 8.54 -92.71 -0.79 12.11 16 29 H 0.35 8.50 8.58 -89.69 -0.77 7.73 16 30 H 0.35 8.14 9.06 -89.70 -0.81 7.33 16 31 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.22 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -66.71 308.79 -1.17 -67.89 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -1.22 Total: 29.51 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 5.04 Total: -0.63 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -5.66 Total: -114.73 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.31 Total: 1.65 kcal Total: -66.71 -1.17 -67.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719056979.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.499 kcal (2) G-P(sol) polarization free energy of solvation -66.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds