Wall clock time and date at job start Mon Mar 30 2020 04:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 H 1.08993 * 109.46981 * 320.00458 * 15 13 12 17 17 N 1.46898 * 109.47377 * 199.99980 * 15 13 12 18 18 C 1.53006 * 109.46822 * 79.99756 * 15 13 12 19 19 C 1.50701 * 109.47141 * 184.99897 * 18 15 13 20 20 C 1.33633 * 126.03210 * 89.71709 * 19 18 15 21 21 N 1.31785 * 114.49856 * 179.79162 * 20 19 18 22 22 C 1.29028 * 117.12250 * 0.52046 * 21 20 19 23 23 S 1.70980 * 110.16646 * 359.71426 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 29 29 H 1.00897 * 110.99665 * 176.05123 * 17 15 13 30 30 H 1.00909 * 110.99884 * 299.99794 * 17 15 13 31 31 H 1.08998 * 109.47436 * 305.00639 * 18 15 13 32 32 H 1.09004 * 109.46746 * 65.00306 * 18 15 13 33 33 H 1.08000 * 122.75401 * 359.97438 * 20 19 18 34 34 H 1.07993 * 124.91603 * 179.75733 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 1 2.2141 -1.7273 3.6334 17 7 2.2604 0.0299 4.7840 18 6 4.1738 -0.8392 3.5266 19 6 4.6656 -1.6558 4.6938 20 6 4.8283 -2.9820 4.7124 21 7 5.2766 -3.4617 5.8550 22 6 5.4913 -2.6150 6.8047 23 16 5.1202 -1.0314 6.2774 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7093 1.1619 -3.4844 28 1 2.2491 -1.6318 1.1525 29 1 2.5292 -0.4585 5.6250 30 1 2.6516 0.9598 4.7652 31 1 4.4661 -1.3240 2.5951 32 1 4.6122 0.1578 3.5703 33 1 4.6130 -3.6091 3.8598 34 1 5.8536 -2.8696 7.7896 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719056982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:40 Heat of formation + Delta-G solvation = 1.127643 kcal Electronic energy + Delta-G solvation = -18045.941324 eV Core-core repulsion = 15105.354497 eV Total energy + Delta-G solvation = -2940.586827 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.99574 -39.09743 -35.75218 -34.66516 -32.38445 -31.38648 -29.23151 -27.73180 -25.54450 -25.23375 -23.44260 -20.86773 -20.16818 -19.39372 -18.38564 -17.51682 -16.22042 -15.92032 -15.26742 -14.98884 -14.66614 -14.49022 -14.21502 -14.11430 -13.66158 -13.34021 -12.94402 -12.49458 -12.33251 -11.96870 -11.62469 -11.28452 -11.11248 -10.94527 -10.73498 -10.33271 -10.24611 -9.92609 -9.56008 -9.37146 -9.16137 -9.05064 -8.58827 -8.50918 -7.93076 -6.13723 -4.23399 0.41966 1.06328 1.45981 2.57674 3.23065 3.29875 3.31302 3.32505 3.89790 4.09932 4.33997 4.53906 4.76321 4.89433 4.98955 5.04711 5.18609 5.29669 5.51711 5.60186 5.76428 5.92600 6.82365 6.98010 7.03087 7.15633 7.41452 7.42613 7.45201 7.55375 7.68176 7.90431 8.14104 8.63768 8.76315 9.09811 9.44360 10.92173 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029534 B = 0.004144 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.824835 B = 6754.934666 C = 7410.157719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.707 5.707 13 C 0.510 3.490 14 O -0.542 6.542 15 C 0.080 3.920 16 H 0.100 0.900 17 N -0.823 5.823 18 C -0.076 4.076 19 C -0.210 4.210 20 C 0.033 3.967 21 N -0.467 5.467 22 C 0.012 3.988 23 S 0.116 5.884 24 H 0.015 0.985 25 H 0.026 0.974 26 H 0.090 0.910 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.338 0.662 30 H 0.351 0.649 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.179 0.821 34 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.386 -5.808 16.216 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.355 5.355 13 C 0.293 3.707 14 O -0.420 6.420 15 C -0.037 4.037 16 H 0.118 0.882 17 N -0.355 5.355 18 C -0.118 4.118 19 C -0.331 4.331 20 C -0.117 4.117 21 N -0.180 5.180 22 C -0.285 4.285 23 S 0.368 5.632 24 H 0.035 0.965 25 H 0.045 0.955 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.152 0.848 30 H 0.166 0.834 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.196 0.804 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 7.486 -4.522 16.430 18.612 hybrid contribution 1.317 -1.549 -1.309 2.418 sum 8.803 -6.071 15.121 18.520 Atomic orbital electron populations 1.22077 0.98428 0.99148 1.00948 1.18744 0.91082 0.93924 0.79894 0.93399 1.21210 1.32529 1.13223 0.90322 0.92081 1.24884 0.94807 0.94923 0.99056 1.69901 1.35834 1.22381 1.23904 0.86457 0.79154 0.79291 0.82242 1.20529 1.21072 1.19870 1.46519 1.65046 1.13525 1.10444 1.20058 0.79000 0.87513 0.84149 1.90651 1.50714 1.16009 1.84601 1.21494 0.91739 0.98847 0.91628 0.88180 1.58526 1.67661 1.06724 1.02563 1.20913 0.96465 0.99827 0.94616 1.26013 1.09565 0.97907 0.99581 1.21849 1.01181 0.92182 0.96522 1.66339 1.13987 1.37337 1.00363 1.28387 1.04794 0.91997 1.03349 1.84143 1.60006 1.12848 1.06196 0.96545 0.95477 0.89184 0.92552 0.77994 0.84820 0.83441 0.88090 0.89681 0.80417 0.78527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.27 6.64 2.56 -69.08 -0.18 6.47 16 3 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.70 11.32 55.43 0.63 -24.07 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.71 -14.13 5.07 -54.93 -0.28 -14.41 16 13 C 0.51 9.74 7.04 -10.99 -0.08 9.66 16 14 O -0.54 -12.68 15.91 5.56 0.09 -12.59 16 15 C 0.08 1.09 3.20 -68.86 -0.22 0.87 16 16 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 17 N -0.82 -10.97 8.95 -5.65 -0.05 -11.02 16 18 C -0.08 -0.87 5.38 -27.88 -0.15 -1.02 16 19 C -0.21 -2.14 5.22 -35.92 -0.19 -2.33 16 20 C 0.03 0.35 11.25 -19.19 -0.22 0.14 16 21 N -0.47 -5.17 10.54 -15.75 -0.17 -5.34 16 22 C 0.01 0.11 12.23 51.58 0.63 0.74 16 23 S 0.12 0.97 22.24 -107.50 -2.39 -1.42 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.39 6.59 8.54 -40.82 -0.35 6.24 16 29 H 0.34 3.72 7.39 -39.29 -0.29 3.43 16 30 H 0.35 4.76 8.58 -39.29 -0.34 4.43 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 306.09 15.07 4.61 4.61 Total: -1.00 -31.50 306.09 -7.21 -38.71 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.19 Total: 11.48 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.45 Total: -1.32 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.13 Total: -54.84 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.39 Total: -1.42 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.50 -7.21 -38.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719056982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.838 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds