Wall clock time and date at job start Mon Mar 30 2020 04:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 H 1.08993 * 109.46981 * 320.00458 * 15 13 12 17 17 N 1.46898 * 109.47377 * 199.99980 * 15 13 12 18 18 C 1.53006 * 109.46822 * 79.99756 * 15 13 12 19 19 C 1.50701 * 109.47141 * 184.99897 * 18 15 13 20 20 C 1.33633 * 126.03210 * 89.71709 * 19 18 15 21 21 N 1.31785 * 114.49856 * 179.79162 * 20 19 18 22 22 C 1.29028 * 117.12250 * 0.52046 * 21 20 19 23 23 S 1.70980 * 110.16646 * 359.71426 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 29 29 H 1.00897 * 110.99665 * 176.05123 * 17 15 13 30 30 H 1.00909 * 110.99884 * 299.99794 * 17 15 13 31 31 H 1.08998 * 109.47436 * 305.00639 * 18 15 13 32 32 H 1.09004 * 109.46746 * 65.00306 * 18 15 13 33 33 H 1.08000 * 122.75401 * 359.97438 * 20 19 18 34 34 H 1.07993 * 124.91603 * 179.75733 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 1 2.2141 -1.7273 3.6334 17 7 2.2604 0.0299 4.7840 18 6 4.1738 -0.8392 3.5266 19 6 4.6656 -1.6558 4.6938 20 6 4.8283 -2.9820 4.7124 21 7 5.2766 -3.4617 5.8550 22 6 5.4913 -2.6150 6.8047 23 16 5.1202 -1.0314 6.2774 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7093 1.1619 -3.4844 28 1 2.2491 -1.6318 1.1525 29 1 2.5292 -0.4585 5.6250 30 1 2.6516 0.9598 4.7652 31 1 4.4661 -1.3240 2.5951 32 1 4.6122 0.1578 3.5703 33 1 4.6130 -3.6091 3.8598 34 1 5.8536 -2.8696 7.7896 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719056982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:40 Heat of formation + Delta-G solvation = -23.424607 kcal Electronic energy + Delta-G solvation = -18047.005989 eV Core-core repulsion = 15105.354497 eV Total energy + Delta-G solvation = -2941.651492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98389 -40.40579 -37.12493 -36.34236 -34.28933 -32.28356 -31.05550 -28.71593 -27.33723 -26.49731 -24.53844 -22.57258 -21.16447 -20.82028 -19.29077 -18.89865 -17.89251 -17.25200 -16.66883 -16.09087 -16.03840 -15.91033 -15.36568 -14.99969 -14.82568 -14.54776 -14.42872 -14.09526 -13.68766 -13.45936 -13.03082 -12.91220 -12.77638 -12.70477 -12.27316 -12.13180 -12.09422 -11.08900 -10.78113 -10.61894 -10.55202 -10.31859 -10.12009 -9.74853 -9.55487 -8.16109 -6.33587 -0.29135 0.37736 0.77039 1.46469 1.46779 1.57257 1.73926 1.90841 2.33436 2.56291 3.14531 3.40504 3.58505 3.75632 3.93464 3.96030 4.17122 4.36146 4.43003 4.70757 4.76559 4.86375 4.93956 5.11463 5.18949 5.44352 5.62382 5.69907 5.89285 6.01640 6.11198 6.44457 6.72561 6.74614 6.98362 7.34145 7.57197 8.90217 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029534 B = 0.004144 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.824835 B = 6754.934666 C = 7410.157719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H -0.001 1.001 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.702 5.702 13 C 0.506 3.494 14 O -0.589 6.589 15 C 0.096 3.904 16 H 0.119 0.881 17 N -0.831 5.831 18 C -0.064 4.064 19 C -0.228 4.228 20 C 0.031 3.969 21 N -0.500 5.500 22 C 0.020 3.980 23 S 0.146 5.854 24 H 0.010 0.990 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.265 0.735 28 H 0.405 0.595 29 H 0.353 0.647 30 H 0.349 0.651 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.187 0.813 34 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.618 -7.730 17.244 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.017 0.983 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.351 5.351 13 C 0.292 3.708 14 O -0.470 6.470 15 C -0.020 4.020 16 H 0.137 0.863 17 N -0.365 5.365 18 C -0.106 4.106 19 C -0.350 4.350 20 C -0.120 4.120 21 N -0.213 5.213 22 C -0.277 4.277 23 S 0.398 5.602 24 H 0.029 0.971 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.241 0.759 29 H 0.169 0.831 30 H 0.163 0.837 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.204 0.796 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 8.738 -6.486 17.498 20.606 hybrid contribution 0.949 -0.908 -1.516 2.006 sum 9.687 -7.393 15.982 20.098 Atomic orbital electron populations 1.21908 0.98588 0.99399 0.99443 1.18324 0.90920 0.91991 0.81989 0.98279 1.21550 1.32519 1.13542 0.90673 0.90604 1.25792 0.94898 0.95539 1.02337 1.70055 1.37100 1.23968 1.24565 0.85355 0.79023 0.77992 0.78017 1.19784 1.21404 1.18650 1.46241 1.65044 1.14250 1.09572 1.20991 0.77615 0.87062 0.85155 1.90629 1.52531 1.18325 1.85468 1.21299 0.93346 0.98505 0.88887 0.86323 1.58487 1.68087 1.06849 1.03030 1.20680 0.94408 0.99873 0.95685 1.25812 1.11102 0.97858 1.00183 1.22054 1.00619 0.92419 0.96874 1.66404 1.15565 1.38317 1.01020 1.28994 1.02860 0.91809 1.04009 1.84080 1.59196 1.12280 1.04607 0.97131 0.94138 0.91556 0.92607 0.75945 0.83102 0.83663 0.87799 0.90347 0.79646 0.75454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 13.87 2.56 44.25 0.11 13.99 16 3 H 0.00 -0.04 7.58 -2.39 -0.02 -0.06 16 4 C -0.54 -28.20 8.73 25.60 0.22 -27.98 16 5 H 0.08 3.62 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -52.45 11.32 21.45 0.24 -52.20 16 8 Si 0.97 41.40 29.54 68.60 2.03 43.43 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 12 N -0.70 -27.91 5.07 -446.10 -2.26 -30.17 16 13 C 0.51 19.34 7.04 87.66 0.62 19.96 16 14 O -0.59 -28.28 15.91 -3.02 -0.05 -28.32 16 15 C 0.10 2.50 3.20 44.17 0.14 2.64 16 16 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 17 N -0.83 -21.11 8.95 -171.80 -1.54 -22.64 16 18 C -0.06 -1.37 5.38 29.85 0.16 -1.21 16 19 C -0.23 -4.20 5.22 24.64 0.13 -4.07 16 20 C 0.03 0.59 11.25 83.65 0.94 1.53 16 21 N -0.50 -9.88 10.54 -203.75 -2.15 -12.03 16 22 C 0.02 0.29 12.23 130.65 1.60 1.88 16 23 S 0.15 2.07 22.24 -56.49 -1.26 0.82 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 3.70 6.07 -2.38 -0.01 3.69 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.41 13.23 8.54 -92.71 -0.79 12.44 16 29 H 0.35 7.07 7.39 -89.70 -0.66 6.41 16 30 H 0.35 9.24 8.58 -89.69 -0.77 8.47 16 31 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.19 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.23 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -68.92 306.09 -1.02 -69.94 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -1.07 Total: 29.44 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 5.04 Total: 1.75 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -5.70 Total: -117.05 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.05 Total: -28.32 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.26 Total: 0.82 kcal Total: -68.92 -1.02 -69.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719056982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.514 kcal (2) G-P(sol) polarization free energy of solvation -68.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds