Wall clock time and date at job start Mon Mar 30 2020 04:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46492 * 120.00472 * 2 1 4 4 C 1.50700 * 109.47289 * 270.00189 * 3 2 1 5 5 H 1.08005 * 119.99859 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00197 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99642 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 119.99982 * 359.97438 * 6 4 3 9 9 H 1.48508 * 109.47037 * 90.00271 * 8 6 4 10 10 H 1.48495 * 109.47436 * 209.99991 * 8 6 4 11 11 H 1.48496 * 109.47368 * 330.00396 * 8 6 4 12 12 C 1.34784 * 119.99724 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99682 * 180.02562 * 12 2 1 14 14 C 1.50695 * 119.99882 * 359.97438 * 12 2 1 15 15 C 1.50705 * 109.47201 * 179.97438 * 14 12 2 16 16 C 1.33635 * 122.74910 * 124.99515 * 15 14 12 17 17 S 1.76200 * 107.92400 * 179.76239 * 16 15 14 18 18 C 1.70978 * 90.28228 * 0.28647 * 17 16 15 19 19 C 1.50697 * 124.91862 * 179.97438 * 18 17 16 20 20 N 1.46905 * 109.47066 * 269.69556 * 19 18 17 21 21 N 1.29031 * 110.16257 * 359.71104 * 18 17 16 22 22 H 1.09003 * 109.47433 * 270.00338 * 1 2 3 23 23 H 1.09002 * 109.47077 * 30.00004 * 1 2 3 24 24 H 1.08994 * 109.47498 * 150.00167 * 1 2 3 25 25 H 1.09000 * 109.47076 * 29.99648 * 3 2 1 26 26 H 1.08997 * 109.47820 * 149.99871 * 3 2 1 27 27 H 0.96998 * 119.99292 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47073 * 60.00413 * 14 12 2 29 29 H 1.09002 * 109.47546 * 300.00055 * 14 12 2 30 30 H 1.08001 * 126.04212 * 359.97438 * 16 15 14 31 31 H 1.09001 * 109.47558 * 149.69720 * 19 18 17 32 32 H 1.08998 * 109.47216 * 29.69382 * 19 18 17 33 33 H 1.00901 * 110.99869 * 56.04737 * 20 19 18 34 34 H 1.00896 * 110.99543 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.3457 3.2572 -2.9127 8 14 3.7319 3.9297 -0.2530 9 1 5.1054 3.5089 0.1240 10 1 3.7470 5.3563 -0.6650 11 1 2.8254 3.7601 0.9108 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0017 15 6 2.3645 -3.6179 0.0014 16 6 2.3450 -4.5858 0.9226 17 16 3.6437 -5.7164 0.5488 18 6 4.0891 -4.7706 -0.8041 19 6 5.2234 -5.0894 -1.7437 20 7 6.4557 -4.4553 -1.2565 21 7 3.3100 -3.7473 -0.9073 22 1 -0.3634 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 1.6085 2.0283 0.5138 26 1 3.1499 1.1383 0.5138 27 1 3.8220 4.0834 -3.0899 28 1 0.7583 -2.5306 -0.8880 29 1 0.7589 -2.5295 0.8919 30 1 1.6531 -4.6634 1.7482 31 1 4.9886 -4.7106 -2.7384 32 1 5.3642 -6.1692 -1.7900 33 1 6.6600 -4.7413 -0.3107 34 1 7.2317 -4.6547 -1.8698 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719073289.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:18 Heat of formation + Delta-G solvation = 21.861531 kcal Electronic energy + Delta-G solvation = -18139.034262 eV Core-core repulsion = 15199.346524 eV Total energy + Delta-G solvation = -2939.687738 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05993 -38.51381 -35.10598 -34.70559 -32.53792 -31.60789 -29.05427 -27.54579 -26.50965 -25.71309 -22.90874 -21.78290 -19.72211 -18.67233 -17.41843 -16.86201 -16.47696 -16.06699 -15.49794 -15.09670 -14.80606 -14.38257 -13.98665 -13.85855 -13.52721 -13.00841 -12.69327 -12.51618 -12.27962 -12.11371 -11.93024 -11.81486 -11.42713 -11.26015 -10.81558 -10.44920 -10.07260 -9.45586 -9.42506 -9.31789 -8.99826 -8.84238 -8.57230 -8.50604 -7.58995 -6.00328 -3.98171 0.76043 1.40480 1.73878 2.91537 3.34962 3.40755 3.42981 3.47809 4.00172 4.06454 4.47013 4.58153 4.84538 5.05000 5.11601 5.20854 5.31013 5.38601 5.51638 5.56685 5.66516 5.83870 5.92276 6.18019 6.22605 6.77436 6.90835 7.03334 7.27794 7.44213 7.69981 7.97914 8.34530 8.56506 9.03400 9.12394 9.60307 11.13390 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.022369 B = 0.005084 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.413243 B = 5506.414242 C = 6266.553275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.602 5.602 3 C 0.217 3.783 4 C -0.525 4.525 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.876 3.124 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.509 3.491 13 O -0.517 6.517 14 C -0.069 4.069 15 C 0.099 3.901 16 C -0.256 4.256 17 S 0.085 5.915 18 C 0.056 3.944 19 C 0.143 3.857 20 N -0.835 5.835 21 N -0.418 5.418 22 H 0.044 0.956 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.035 0.965 27 H 0.263 0.737 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.176 0.824 31 H 0.103 0.897 32 H 0.047 0.953 33 H 0.341 0.659 34 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 -19.341 7.765 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.336 5.336 3 C 0.097 3.903 4 C -0.564 4.564 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.294 3.706 13 O -0.391 6.391 14 C -0.112 4.112 15 C -0.034 4.034 16 C -0.395 4.395 17 S 0.339 5.661 18 C -0.224 4.224 19 C 0.009 3.991 20 N -0.368 5.368 21 N -0.131 5.131 22 H 0.062 0.938 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.194 0.806 31 H 0.121 0.879 32 H 0.065 0.935 33 H 0.154 0.846 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.325 -19.057 7.545 20.628 hybrid contribution -0.024 0.469 0.722 0.861 sum -2.349 -18.588 8.266 20.478 Atomic orbital electron populations 1.21657 0.81138 1.02999 1.00287 1.47806 1.06104 1.06990 1.72665 1.19624 0.92382 0.80003 0.98308 1.21350 1.36741 1.06930 0.91344 0.90763 1.24858 0.95278 0.97398 0.95522 1.69907 1.41683 1.23532 1.18627 0.86851 0.80156 0.79674 0.82990 1.19942 1.21130 1.19129 1.19977 0.88193 0.84461 0.77933 1.90730 1.13497 1.86738 1.48173 1.20345 0.96102 0.90093 1.04632 1.19741 0.95812 0.96369 0.91428 1.26700 1.05736 1.00288 1.06792 1.83667 1.27372 1.28557 1.26549 1.26903 1.01646 0.94323 0.99577 1.20224 0.86068 0.95958 0.96849 1.58435 1.04863 1.66357 1.07120 1.65956 1.03445 1.17157 1.26513 0.93759 0.90589 0.92224 0.95355 0.94682 0.92665 0.87527 0.87960 0.80637 0.87866 0.93517 0.84608 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.24 59.85 0.61 1.90 16 2 N -0.60 -12.92 2.86 -182.96 -0.52 -13.44 16 3 C 0.22 5.56 4.23 -5.20 -0.02 5.54 16 4 C -0.53 -15.74 9.94 -34.44 -0.34 -16.09 16 5 H 0.07 2.45 8.06 -52.48 -0.42 2.03 16 6 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 7 N -0.90 -28.65 13.96 55.43 0.77 -27.88 16 8 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 9 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 12 C 0.51 11.01 7.64 -10.98 -0.08 10.93 16 13 O -0.52 -13.76 15.03 5.56 0.08 -13.68 16 14 C -0.07 -1.07 4.75 -29.04 -0.14 -1.21 16 15 C 0.10 1.62 5.63 -84.23 -0.47 1.14 16 16 C -0.26 -3.29 11.07 29.12 0.32 -2.96 16 17 S 0.08 0.98 23.18 -107.50 -2.49 -1.52 16 18 C 0.06 0.82 6.90 -13.46 -0.09 0.73 16 19 C 0.14 1.70 7.36 -4.97 -0.04 1.67 16 20 N -0.84 -10.13 9.61 -11.41 -0.11 -10.24 16 21 N -0.42 -7.73 9.68 -8.06 -0.08 -7.81 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 24 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 25 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 26 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 27 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 28 H 0.11 1.49 7.40 -51.93 -0.38 1.11 16 29 H 0.10 1.17 7.99 -51.93 -0.42 0.76 16 30 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.34 3.68 8.99 -39.29 -0.35 3.33 16 34 H 0.35 3.19 9.08 -39.29 -0.36 2.83 16 LS Contribution 306.57 15.07 4.62 4.62 Total: -1.00 -38.97 306.57 -7.02 -45.98 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.27 Total: 2.54 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.35 Total: 3.72 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.06 Total: -59.37 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -38.97 -7.02 -45.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719073289.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.845 kcal (2) G-P(sol) polarization free energy of solvation -38.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds