Wall clock time and date at job start Mon Mar 30 2020 04:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46492 * 120.00472 * 2 1 4 4 C 1.50700 * 109.47289 * 270.00189 * 3 2 1 5 5 H 1.08005 * 119.99859 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00197 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99642 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 119.99982 * 359.97438 * 6 4 3 9 9 H 1.48508 * 109.47037 * 90.00271 * 8 6 4 10 10 H 1.48495 * 109.47436 * 209.99991 * 8 6 4 11 11 H 1.48496 * 109.47368 * 330.00396 * 8 6 4 12 12 C 1.34784 * 119.99724 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99682 * 180.02562 * 12 2 1 14 14 C 1.50695 * 119.99882 * 359.97438 * 12 2 1 15 15 C 1.50705 * 109.47201 * 179.97438 * 14 12 2 16 16 C 1.33635 * 122.74910 * 124.99515 * 15 14 12 17 17 S 1.76200 * 107.92400 * 179.76239 * 16 15 14 18 18 C 1.70978 * 90.28228 * 0.28647 * 17 16 15 19 19 C 1.50697 * 124.91862 * 179.97438 * 18 17 16 20 20 N 1.46905 * 109.47066 * 269.69556 * 19 18 17 21 21 N 1.29031 * 110.16257 * 359.71104 * 18 17 16 22 22 H 1.09003 * 109.47433 * 270.00338 * 1 2 3 23 23 H 1.09002 * 109.47077 * 30.00004 * 1 2 3 24 24 H 1.08994 * 109.47498 * 150.00167 * 1 2 3 25 25 H 1.09000 * 109.47076 * 29.99648 * 3 2 1 26 26 H 1.08997 * 109.47820 * 149.99871 * 3 2 1 27 27 H 0.96998 * 119.99292 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47073 * 60.00413 * 14 12 2 29 29 H 1.09002 * 109.47546 * 300.00055 * 14 12 2 30 30 H 1.08001 * 126.04212 * 359.97438 * 16 15 14 31 31 H 1.09001 * 109.47558 * 149.69720 * 19 18 17 32 32 H 1.08998 * 109.47216 * 29.69382 * 19 18 17 33 33 H 1.00901 * 110.99869 * 56.04737 * 20 19 18 34 34 H 1.00896 * 110.99543 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.3457 3.2572 -2.9127 8 14 3.7319 3.9297 -0.2530 9 1 5.1054 3.5089 0.1240 10 1 3.7470 5.3563 -0.6650 11 1 2.8254 3.7601 0.9108 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0017 15 6 2.3645 -3.6179 0.0014 16 6 2.3450 -4.5858 0.9226 17 16 3.6437 -5.7164 0.5488 18 6 4.0891 -4.7706 -0.8041 19 6 5.2234 -5.0894 -1.7437 20 7 6.4557 -4.4553 -1.2565 21 7 3.3100 -3.7473 -0.9073 22 1 -0.3634 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 1.6085 2.0283 0.5138 26 1 3.1499 1.1383 0.5138 27 1 3.8220 4.0834 -3.0899 28 1 0.7583 -2.5306 -0.8880 29 1 0.7589 -2.5295 0.8919 30 1 1.6531 -4.6634 1.7482 31 1 4.9886 -4.7106 -2.7384 32 1 5.3642 -6.1692 -1.7900 33 1 6.6600 -4.7413 -0.3107 34 1 7.2317 -4.6547 -1.8698 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719073289.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:17 Heat of formation + Delta-G solvation = -10.795225 kcal Electronic energy + Delta-G solvation = -18140.450365 eV Core-core repulsion = 15199.346524 eV Total energy + Delta-G solvation = -2941.103841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.27780 -40.01574 -36.56782 -35.97080 -34.71379 -32.88175 -30.73619 -28.95872 -27.51321 -27.22286 -24.62345 -23.14806 -20.82645 -20.15200 -19.14648 -18.56444 -17.88569 -17.18032 -17.04306 -16.55003 -16.12866 -15.78874 -15.40357 -15.06906 -14.70104 -14.55153 -14.11779 -13.94947 -13.86049 -13.60117 -13.24508 -13.09127 -13.02481 -12.71309 -12.47348 -12.30312 -11.99926 -11.74835 -10.83713 -10.66870 -10.46016 -10.28084 -9.80187 -9.57604 -9.33136 -8.34189 -6.38955 -0.23799 0.46649 0.73868 1.30406 1.36058 1.44113 1.78703 1.88978 2.30650 2.50569 3.00199 3.10661 3.72180 3.75824 3.97522 4.12324 4.26619 4.33872 4.41549 4.53149 4.64053 4.69360 4.76145 4.86479 4.96634 5.01516 5.16346 5.47042 5.66261 6.08380 6.25476 6.51688 6.62166 6.75081 6.98235 7.22112 7.51655 8.83456 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.022369 B = 0.005084 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.413243 B = 5506.414242 C = 6266.553275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.612 5.612 3 C 0.226 3.774 4 C -0.535 4.535 5 H 0.023 0.977 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.951 3.049 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.235 1.235 12 C 0.497 3.503 13 O -0.580 6.580 14 C -0.054 4.054 15 C 0.057 3.943 16 C -0.246 4.246 17 S 0.163 5.837 18 C 0.024 3.976 19 C 0.142 3.858 20 N -0.858 5.858 21 N -0.480 5.480 22 H 0.085 0.915 23 H 0.062 0.938 24 H 0.090 0.910 25 H 0.052 0.948 26 H 0.013 0.987 27 H 0.268 0.732 28 H 0.118 0.882 29 H 0.151 0.849 30 H 0.214 0.786 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.348 0.652 34 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.497 -20.770 10.747 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.344 5.344 3 C 0.103 3.897 4 C -0.574 4.574 5 H 0.041 0.959 6 C -0.190 4.190 7 N -0.588 5.588 8 Si 0.774 3.226 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.158 1.158 12 C 0.285 3.715 13 O -0.459 6.459 14 C -0.096 4.096 15 C -0.076 4.076 16 C -0.385 4.385 17 S 0.417 5.583 18 C -0.255 4.255 19 C 0.008 3.992 20 N -0.393 5.393 21 N -0.195 5.195 22 H 0.103 0.897 23 H 0.081 0.919 24 H 0.108 0.892 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.136 0.864 29 H 0.169 0.831 30 H 0.231 0.769 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.161 0.839 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.734 -20.519 10.526 23.362 hybrid contribution 0.392 0.783 -0.260 0.913 sum -3.342 -19.737 10.266 22.497 Atomic orbital electron populations 1.22004 0.77429 1.03989 1.03186 1.47958 1.08499 1.05699 1.72263 1.19272 0.92603 0.82761 0.95033 1.21590 1.36751 1.06538 0.92500 0.95850 1.25907 0.95251 0.99043 0.98766 1.70068 1.42855 1.24498 1.21382 0.85670 0.79419 0.77720 0.79827 1.20566 1.19673 1.15820 1.21129 0.87960 0.86280 0.76135 1.90685 1.16495 1.87830 1.50902 1.20356 0.95782 0.86138 1.07360 1.19924 0.96782 0.97977 0.92881 1.27210 1.05916 0.99179 1.06170 1.83302 1.25391 1.26091 1.23490 1.27290 1.01958 0.94669 1.01545 1.20303 0.85408 0.97959 0.95544 1.58389 1.05616 1.67335 1.08009 1.65941 1.05228 1.19436 1.28895 0.89674 0.91863 0.89151 0.92975 0.96884 0.92296 0.86439 0.83114 0.76889 0.89747 0.89728 0.83899 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.15 10.24 127.77 1.31 3.46 16 2 N -0.61 -25.93 2.86 -851.16 -2.43 -28.36 16 3 C 0.23 11.60 4.23 85.63 0.36 11.97 16 4 C -0.54 -33.33 9.94 25.60 0.25 -33.07 16 5 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 6 C 0.01 0.49 5.47 84.65 0.46 0.95 16 7 N -0.95 -62.61 13.96 21.45 0.30 -62.31 16 8 Si 0.95 46.52 27.47 68.60 1.88 48.41 16 9 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 12 C 0.50 21.51 7.64 87.65 0.67 22.18 16 13 O -0.58 -32.02 15.03 -3.03 -0.05 -32.07 16 14 C -0.05 -1.58 4.75 29.10 0.14 -1.45 16 15 C 0.06 1.77 5.63 41.52 0.23 2.01 16 16 C -0.25 -5.51 11.07 66.78 0.74 -4.77 16 17 S 0.16 3.31 23.18 -56.49 -1.31 2.00 16 18 C 0.02 0.71 6.90 88.52 0.61 1.32 16 19 C 0.14 3.38 7.36 85.55 0.63 4.01 16 20 N -0.86 -21.05 9.61 -190.00 -1.83 -22.88 16 21 N -0.48 -18.02 9.68 -179.40 -1.74 -19.76 16 22 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 24 H 0.09 2.00 6.44 -2.39 -0.02 1.99 16 25 H 0.05 2.42 7.13 -2.39 -0.02 2.40 16 26 H 0.01 0.73 6.85 -2.39 -0.02 0.71 16 27 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16 28 H 0.12 3.08 7.40 -2.39 -0.02 3.07 16 29 H 0.15 2.77 7.99 -2.39 -0.02 2.75 16 30 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.35 7.40 8.99 -89.69 -0.81 6.60 16 34 H 0.36 6.69 9.08 -89.70 -0.81 5.88 16 Total: -1.00 -92.00 306.57 -0.29 -92.30 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -0.54 Total: 16.06 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 5.41 Total: 6.61 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -5.70 Total: -133.31 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.05 Total: -32.07 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.88 Total: 48.41 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.31 Total: 2.00 kcal Total: -92.00 -0.29 -92.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719073289.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.500 kcal (2) G-P(sol) polarization free energy of solvation -92.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds