Wall clock time and date at job start Mon Mar 30 2020 04:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47246 * 2 1 4 4 C 1.34666 * 126.59589 * 275.02842 * 3 2 1 5 5 N 1.34121 * 108.02399 * 179.97438 * 4 3 2 6 6 C 1.30504 * 109.25569 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.64988 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46976 * 274.97602 * 7 6 5 9 9 C 1.34780 * 119.99910 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99779 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.99706 * 180.02562 * 9 8 7 12 12 S 1.81005 * 109.46864 * 180.02562 * 11 9 8 13 13 C 1.76196 * 100.00125 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99877 * 359.97438 * 13 12 11 15 15 C 1.38797 * 120.00244 * 179.97438 * 13 12 11 16 16 N 1.31623 * 119.99912 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00131 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47039 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47438 * 120.00320 * 17 15 13 20 20 H 1.48501 * 109.46966 * 240.00216 * 17 15 13 21 21 N 1.35039 * 108.70033 * 0.02562 * 6 5 4 22 22 H 0.97003 * 126.39946 * 180.02562 * 21 6 5 23 23 H 1.09001 * 109.47479 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46771 * 299.99507 * 1 2 3 25 25 H 1.09006 * 109.47394 * 59.99292 * 1 2 3 26 26 H 1.09001 * 109.46730 * 239.99748 * 2 1 3 27 27 H 1.09002 * 109.46941 * 120.00526 * 2 1 3 28 28 H 1.08001 * 125.98583 * 0.02562 * 4 3 2 29 29 H 1.09005 * 109.47407 * 34.97526 * 7 6 5 30 30 H 1.08995 * 109.47129 * 154.97895 * 7 6 5 31 31 H 0.96995 * 120.00056 * 0.02562 * 8 7 6 32 32 H 1.09002 * 109.47303 * 299.99461 * 11 9 8 33 33 H 1.08999 * 109.47599 * 60.00110 * 11 9 8 34 34 H 0.97006 * 120.00114 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2106 2.2093 -1.0770 5 7 2.6692 3.3956 -0.6514 6 6 2.7814 3.3725 0.6486 7 6 3.2631 4.5120 1.5090 8 7 4.7267 4.4928 1.5703 9 6 5.3835 5.4258 2.2877 10 8 4.7628 6.2811 2.8828 11 6 6.8891 5.4063 2.3503 12 16 7.4677 6.7749 3.3839 13 6 9.2080 6.5182 3.2854 14 1 9.6007 5.6971 2.7040 15 6 10.0744 7.3712 3.9550 16 7 9.5958 8.3716 4.6640 17 14 11.9195 7.0986 3.8512 18 1 12.1977 5.9144 2.9993 19 1 12.5645 8.2977 3.2588 20 1 12.4629 6.8663 5.2135 21 7 2.3943 2.1582 1.0950 22 1 2.3756 1.8638 2.0190 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0173 1.9347 -2.1035 29 1 2.9298 5.4572 1.0803 30 1 2.8559 4.4055 2.5144 31 1 5.2231 3.8090 1.0941 32 1 7.2227 4.4614 2.7792 33 1 7.2960 5.5127 1.3448 34 1 10.2013 8.9680 5.1317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719141485.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:46 Heat of formation + Delta-G solvation = 6.575226 kcal Electronic energy + Delta-G solvation = -17045.178532 eV Core-core repulsion = 14104.827930 eV Total energy + Delta-G solvation = -2940.350602 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.44614 -39.12097 -35.07893 -34.08690 -32.63147 -32.42748 -30.46806 -28.64076 -26.04445 -25.40002 -23.66983 -21.32530 -20.76909 -20.45438 -18.16729 -17.52639 -16.38861 -16.04451 -15.35680 -15.19227 -14.80227 -14.79479 -14.50174 -13.91621 -13.90083 -13.38217 -13.15223 -12.88220 -12.77423 -12.54420 -12.07117 -11.79128 -11.65024 -11.06724 -11.01822 -10.76113 -10.30921 -10.22570 -9.81202 -9.55237 -9.08330 -8.99168 -8.57856 -8.23475 -6.49962 -6.21668 -3.92104 1.59157 2.63411 2.75581 3.05116 3.14313 3.21997 3.29779 3.36913 3.79493 4.08858 4.20468 4.38636 4.50576 4.81621 4.84207 5.10222 5.12620 5.13709 5.14335 5.30670 5.39087 5.48411 5.59954 5.71222 5.72017 5.88854 5.94557 6.14334 6.43409 6.47018 7.01065 7.60107 7.63192 7.78927 8.35759 8.54310 9.23914 10.85822 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.045398 B = 0.002919 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.619601 B = 9591.597906 C = 9884.716200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C -0.017 4.017 4 C -0.023 4.023 5 N -0.469 5.469 6 C 0.192 3.808 7 C 0.210 3.790 8 N -0.734 5.734 9 C 0.535 3.465 10 O -0.516 6.516 11 C -0.152 4.152 12 S -0.059 6.059 13 C -0.535 4.535 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 N -0.556 5.556 22 H 0.420 0.580 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.170 0.830 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.401 0.599 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.851 -18.089 -8.676 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.134 4.134 4 C -0.172 4.172 5 N -0.188 5.188 6 C -0.071 4.071 7 C 0.084 3.916 8 N -0.391 5.391 9 C 0.321 3.679 10 O -0.389 6.389 11 C -0.303 4.303 12 S 0.167 5.833 13 C -0.683 4.683 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.746 3.254 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.206 1.206 21 N -0.159 5.159 22 H 0.258 0.742 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.188 0.812 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.235 0.765 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.672 -15.796 -8.102 24.354 hybrid contribution 1.893 -2.360 -0.092 3.027 sum -14.778 -18.156 -8.194 24.803 Atomic orbital electron populations 1.21783 0.94297 1.02024 1.02516 1.20014 0.96141 0.88957 1.03593 1.21347 1.08233 0.96518 0.87262 1.22154 1.06130 0.90175 0.98779 1.70289 1.17471 1.22997 1.08053 1.23105 1.05140 0.87561 0.91311 1.19400 0.81441 0.93829 0.96922 1.46019 1.05699 1.33542 1.53799 1.20327 0.89763 0.80176 0.77588 1.90714 1.68944 1.35852 1.43428 1.23525 0.93131 1.07260 1.06376 1.85391 1.04525 1.32268 1.61104 1.22907 0.91150 1.17604 1.36628 0.90859 1.24996 0.99642 0.94471 0.94526 1.70026 1.35400 1.15225 1.29631 0.86109 0.83013 0.78301 0.78024 1.19624 1.20541 1.20591 1.43201 1.50492 1.12310 1.09940 0.74232 0.91944 0.92820 0.91992 0.89286 0.91127 0.81242 0.88298 0.90029 0.76507 0.89211 0.88996 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.89 37.16 0.37 -0.33 16 2 C -0.05 -0.25 6.49 -27.89 -0.18 -0.43 16 3 C -0.02 -0.14 6.49 -81.60 -0.53 -0.67 16 4 C -0.02 -0.24 11.79 -17.82 -0.21 -0.45 16 5 N -0.47 -6.06 11.25 -10.82 -0.12 -6.18 16 6 C 0.19 2.15 7.52 -155.42 -1.17 0.98 16 7 C 0.21 2.54 6.30 -5.19 -0.03 2.51 16 8 N -0.73 -10.09 5.55 -61.47 -0.34 -10.43 16 9 C 0.54 9.92 7.85 -10.98 -0.09 9.83 16 10 O -0.52 -11.49 15.86 5.56 0.09 -11.40 16 11 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 12 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 13 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 14 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 15 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 17 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 N -0.56 -4.67 6.15 -6.54 -0.04 -4.71 16 22 H 0.42 2.45 8.96 -40.82 -0.37 2.08 16 23 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.40 4.76 8.46 -40.82 -0.35 4.42 16 32 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 33 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 315.84 15.07 4.76 4.76 Total: -1.00 -35.45 315.84 -8.06 -43.51 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.48 Total: 1.65 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -1.42 Total: -4.38 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.23 Total: -46.76 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.45 -8.06 -43.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719141485.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.089 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds