Wall clock time and date at job start Mon Mar 30 2020 04:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47246 * 2 1 4 4 C 1.34666 * 126.59589 * 275.02842 * 3 2 1 5 5 N 1.34121 * 108.02399 * 179.97438 * 4 3 2 6 6 C 1.30504 * 109.25569 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.64988 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46976 * 274.97602 * 7 6 5 9 9 C 1.34780 * 119.99910 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99779 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.99706 * 180.02562 * 9 8 7 12 12 S 1.81005 * 109.46864 * 180.02562 * 11 9 8 13 13 C 1.76196 * 100.00125 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99877 * 359.97438 * 13 12 11 15 15 C 1.38797 * 120.00244 * 179.97438 * 13 12 11 16 16 N 1.31623 * 119.99912 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00131 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47039 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47438 * 120.00320 * 17 15 13 20 20 H 1.48501 * 109.46966 * 240.00216 * 17 15 13 21 21 N 1.35039 * 108.70033 * 0.02562 * 6 5 4 22 22 H 0.97003 * 126.39946 * 180.02562 * 21 6 5 23 23 H 1.09001 * 109.47479 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46771 * 299.99507 * 1 2 3 25 25 H 1.09006 * 109.47394 * 59.99292 * 1 2 3 26 26 H 1.09001 * 109.46730 * 239.99748 * 2 1 3 27 27 H 1.09002 * 109.46941 * 120.00526 * 2 1 3 28 28 H 1.08001 * 125.98583 * 0.02562 * 4 3 2 29 29 H 1.09005 * 109.47407 * 34.97526 * 7 6 5 30 30 H 1.08995 * 109.47129 * 154.97895 * 7 6 5 31 31 H 0.96995 * 120.00056 * 0.02562 * 8 7 6 32 32 H 1.09002 * 109.47303 * 299.99461 * 11 9 8 33 33 H 1.08999 * 109.47599 * 60.00110 * 11 9 8 34 34 H 0.97006 * 120.00114 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2106 2.2093 -1.0770 5 7 2.6692 3.3956 -0.6514 6 6 2.7814 3.3725 0.6486 7 6 3.2631 4.5120 1.5090 8 7 4.7267 4.4928 1.5703 9 6 5.3835 5.4258 2.2877 10 8 4.7628 6.2811 2.8828 11 6 6.8891 5.4063 2.3503 12 16 7.4677 6.7749 3.3839 13 6 9.2080 6.5182 3.2854 14 1 9.6007 5.6971 2.7040 15 6 10.0744 7.3712 3.9550 16 7 9.5958 8.3716 4.6640 17 14 11.9195 7.0986 3.8512 18 1 12.1977 5.9144 2.9993 19 1 12.5645 8.2977 3.2588 20 1 12.4629 6.8663 5.2135 21 7 2.3943 2.1582 1.0950 22 1 2.3756 1.8638 2.0190 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0173 1.9347 -2.1035 29 1 2.9298 5.4572 1.0803 30 1 2.8559 4.4055 2.5144 31 1 5.2231 3.8090 1.0941 32 1 7.2227 4.4614 2.7792 33 1 7.2960 5.5127 1.3448 34 1 10.2013 8.9680 5.1317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719141485.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:46 Heat of formation + Delta-G solvation = -19.339167 kcal Electronic energy + Delta-G solvation = -17046.302264 eV Core-core repulsion = 14104.827930 eV Total energy + Delta-G solvation = -2941.474334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.21078 -40.58135 -36.16320 -34.82963 -34.58266 -33.39431 -31.75546 -29.74018 -27.71341 -26.83223 -24.23488 -22.08558 -21.88109 -21.51218 -19.91043 -18.63747 -17.82687 -17.20899 -16.87806 -16.65384 -16.18652 -15.66939 -15.38321 -15.27924 -14.77120 -14.50780 -14.44261 -14.30908 -13.81118 -13.36569 -13.24345 -13.15903 -12.90943 -12.60129 -12.47317 -12.03119 -11.71948 -11.15698 -11.13496 -11.06610 -11.00302 -10.28000 -10.26462 -9.33624 -8.66363 -8.34741 -6.12495 0.79557 1.28163 1.41724 1.46957 1.55803 1.58185 1.89505 2.02702 2.27012 2.49722 2.99542 3.24891 3.31899 3.83402 3.92425 4.03042 4.15264 4.29374 4.37008 4.44432 4.50698 4.55909 4.68155 4.75446 4.92306 5.07450 5.23758 5.34121 5.38154 5.42599 5.71434 6.20314 6.32692 6.40852 7.01161 7.06840 7.13890 8.74694 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.045398 B = 0.002919 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.619601 B = 9591.597906 C = 9884.716200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.003 3.997 4 C -0.051 4.051 5 N -0.504 5.504 6 C 0.177 3.823 7 C 0.214 3.786 8 N -0.710 5.710 9 C 0.540 3.460 10 O -0.559 6.559 11 C -0.129 4.129 12 S -0.147 6.147 13 C -0.546 4.546 14 H 0.082 0.918 15 C 0.013 3.987 16 N -0.911 5.911 17 Si 0.999 3.001 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.273 1.273 21 N -0.544 5.544 22 H 0.433 0.567 23 H 0.078 0.922 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.185 0.815 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.413 0.587 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.541 -20.883 -9.512 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.114 4.114 4 C -0.199 4.199 5 N -0.224 5.224 6 C -0.086 4.086 7 C 0.089 3.911 8 N -0.365 5.365 9 C 0.326 3.674 10 O -0.436 6.436 11 C -0.280 4.280 12 S 0.080 5.920 13 C -0.694 4.694 14 H 0.100 0.900 15 C -0.192 4.192 16 N -0.547 5.547 17 Si 0.821 3.179 18 H -0.181 1.181 19 H -0.200 1.200 20 H -0.199 1.199 21 N -0.149 5.149 22 H 0.273 0.727 23 H 0.096 0.904 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.202 0.798 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.250 0.750 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.380 -18.641 -8.954 26.381 hybrid contribution 1.648 -1.614 0.079 2.308 sum -14.732 -20.255 -8.875 26.572 Atomic orbital electron populations 1.21764 0.93866 1.02898 1.01895 1.20163 0.96324 0.86897 1.05064 1.21841 1.05804 0.97383 0.86402 1.22535 1.07209 0.89896 1.00241 1.70206 1.18430 1.24696 1.09084 1.22664 1.06762 0.88240 0.90891 1.19368 0.79914 0.93963 0.97884 1.45745 1.06649 1.32130 1.51936 1.20004 0.89055 0.80500 0.77840 1.90705 1.69430 1.37859 1.45654 1.23360 0.94401 1.04787 1.05500 1.85546 1.05648 1.36987 1.63810 1.23233 0.91345 1.17972 1.36806 0.89966 1.26127 1.05299 0.93944 0.93836 1.70183 1.37456 1.16389 1.30696 0.84898 0.75883 0.78690 0.78424 1.18116 1.19974 1.19855 1.43152 1.49493 1.11389 1.10831 0.72664 0.90353 0.93500 0.92590 0.87832 0.89643 0.79835 0.89717 0.88666 0.75045 0.86978 0.87418 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 71.98 0.71 -0.28 16 2 C -0.05 -0.32 6.49 29.85 0.19 -0.13 16 3 C 0.00 0.05 6.49 40.95 0.27 0.31 16 4 C -0.05 -0.96 11.79 83.52 0.98 0.02 16 5 N -0.50 -12.60 11.25 -188.14 -2.12 -14.72 16 6 C 0.18 3.76 7.52 138.13 1.04 4.79 16 7 C 0.21 5.02 6.30 85.63 0.54 5.56 16 8 N -0.71 -18.61 5.55 -466.78 -2.59 -21.20 16 9 C 0.54 19.77 7.85 87.66 0.69 20.46 16 10 O -0.56 -25.33 15.86 -3.03 -0.05 -25.38 16 11 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 12 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 13 C -0.55 -31.19 9.50 67.95 0.65 -30.54 16 14 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 15 C 0.01 0.72 5.49 84.86 0.47 1.19 16 16 N -0.91 -55.94 13.22 21.65 0.29 -55.66 16 17 Si 1.00 43.69 29.55 68.60 2.03 45.71 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 N -0.54 -7.99 6.15 -174.60 -1.07 -9.07 16 22 H 0.43 3.95 8.96 -92.71 -0.83 3.12 16 23 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 24 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 25 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 26 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 29 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.41 8.98 8.46 -92.71 -0.78 8.19 16 32 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 33 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 34 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -78.33 315.84 0.81 -77.52 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -0.49 Total: 15.38 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.97 Total: -3.29 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -5.49 Total: -100.64 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -78.33 0.81 -77.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719141485.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.183 kcal (2) G-P(sol) polarization free energy of solvation -78.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds