Wall clock time and date at job start Mon Mar 30 2020 04:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47072 * 2 1 4 4 C 1.50700 * 109.46737 * 119.99757 * 2 1 3 5 5 H 1.08007 * 119.99770 * 120.00254 * 4 2 1 6 6 C 1.37878 * 120.00302 * 300.00146 * 4 2 1 7 7 N 1.31514 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99965 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47382 * 59.99780 * 8 6 4 10 10 H 1.48509 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47330 * 299.99566 * 8 6 4 12 12 N 1.46498 * 109.47160 * 239.99930 * 2 1 3 13 13 C 1.46504 * 119.99703 * 299.99845 * 12 2 1 14 14 C 1.34776 * 120.00066 * 120.00234 * 12 2 1 15 15 O 1.21686 * 120.00021 * 1.31024 * 14 12 2 16 16 C 1.46680 * 119.99799 * 181.30812 * 14 12 2 17 17 C 1.35670 * 126.12576 * 172.05290 * 16 14 12 18 18 N 1.30945 * 114.18882 * 180.02562 * 17 16 14 19 19 C 1.29428 * 117.36126 * 0.02562 * 18 17 16 20 20 C 1.50699 * 124.80026 * 180.02562 * 19 18 17 21 21 N 1.46903 * 109.47239 * 90.02484 * 20 19 18 22 22 S 1.70947 * 110.39504 * 359.72289 * 19 18 17 23 23 H 1.08993 * 109.47350 * 300.00166 * 1 2 3 24 24 H 1.09007 * 109.46552 * 60.00276 * 1 2 3 25 25 H 1.08998 * 109.47072 * 179.97438 * 1 2 3 26 26 H 0.96993 * 120.00195 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.47308 * 263.63745 * 13 12 2 28 28 H 1.09007 * 109.46678 * 143.64153 * 13 12 2 29 29 H 1.08997 * 109.47192 * 23.64137 * 13 12 2 30 30 H 1.07997 * 122.90317 * 0.03834 * 17 16 14 31 31 H 1.09005 * 109.47324 * 210.02016 * 20 19 18 32 32 H 1.08998 * 109.47371 * 330.02230 * 20 19 18 33 33 H 1.00904 * 110.99799 * 180.02562 * 21 20 19 34 34 H 1.00898 * 110.99564 * 303.95252 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8073 -1.1190 4.0078 10 1 1.8267 -0.4198 5.2205 11 1 1.8278 -2.5197 4.0083 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0357 -2.0833 15 8 3.1070 1.1222 -1.8788 16 6 3.2585 -0.7185 -3.2952 17 6 3.9101 -0.1436 -4.3371 18 7 4.2176 -0.9741 -5.3017 19 6 3.8729 -2.2127 -5.1527 20 6 4.1421 -3.3067 -6.1536 21 7 5.4422 -3.9263 -5.8640 22 16 3.0765 -2.4336 -3.6563 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7094 1.1619 3.4843 27 1 2.4703 -2.7349 -1.0717 28 1 1.5132 -2.2582 -2.4947 29 1 0.7466 -2.3300 -0.8899 30 1 4.1543 0.9079 -4.3681 31 1 3.3576 -4.0607 -6.0876 32 1 4.1566 -2.8845 -7.1583 33 1 5.6461 -4.6634 -6.5222 34 1 6.1779 -3.2358 -5.8555 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720249655.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:07 Heat of formation + Delta-G solvation = 18.566758 kcal Electronic energy + Delta-G solvation = -18297.907799 eV Core-core repulsion = 15358.077189 eV Total energy + Delta-G solvation = -2939.830610 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.85339 -38.79049 -35.47928 -34.99293 -33.00436 -30.63535 -29.17231 -27.06742 -26.31810 -25.25695 -23.66966 -22.16238 -19.91854 -18.58237 -17.98257 -16.69250 -16.45490 -15.83241 -15.70941 -15.22029 -14.74607 -14.64493 -14.12956 -13.60509 -13.48072 -13.01189 -12.75765 -12.61440 -12.47524 -11.98105 -11.63704 -11.30312 -11.08146 -10.89098 -10.75587 -10.33111 -10.21732 -9.62402 -9.33522 -9.25545 -9.13781 -9.08718 -8.78268 -8.47608 -7.72823 -6.11586 -4.20232 0.42984 1.35642 1.80083 2.66969 3.26535 3.31797 3.33539 3.69811 3.75397 4.01539 4.36714 4.42836 4.83544 5.00622 5.15082 5.20600 5.35248 5.41336 5.52569 5.81933 6.10016 6.22242 6.65137 6.68589 6.73895 6.96130 7.03538 7.28338 7.40270 7.64460 7.73656 7.93897 8.10505 8.35661 8.72259 8.88655 9.46332 10.93821 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.031333 B = 0.004877 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.420567 B = 5739.667955 C = 6081.935096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.583 5.583 13 C 0.075 3.925 14 C 0.578 3.422 15 O -0.535 6.535 16 C -0.275 4.275 17 C 0.100 3.900 18 N -0.480 5.480 19 C 0.000 4.000 20 C 0.141 3.859 21 N -0.843 5.843 22 S 0.227 5.773 23 H 0.097 0.903 24 H 0.013 0.987 25 H 0.031 0.969 26 H 0.265 0.735 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.184 0.816 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.349 0.651 34 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 -10.185 -14.746 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.160 3.840 3 H 0.085 0.915 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.071 4.071 14 C 0.363 3.637 15 O -0.415 6.415 16 C -0.400 4.400 17 C -0.057 4.057 18 N -0.195 5.195 19 C -0.274 4.274 20 C 0.007 3.993 21 N -0.376 5.376 22 S 0.484 5.516 23 H 0.115 0.885 24 H 0.032 0.968 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.201 0.799 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.163 0.837 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.140 -10.436 -13.784 17.421 hybrid contribution 0.823 0.732 -0.163 1.113 sum 2.964 -9.704 -13.947 17.247 Atomic orbital electron populations 1.22123 0.97885 0.99523 1.01133 1.19056 0.91048 0.94600 0.79334 0.91498 1.21255 1.32184 1.13178 0.90141 0.92214 1.24882 0.94834 0.94943 0.98976 1.69859 1.36148 1.22463 1.24021 0.86523 0.79305 0.79553 0.81831 1.20185 1.21122 1.20163 1.48177 1.48264 1.11419 1.23426 1.21815 1.02970 0.83706 0.98574 1.16822 0.79494 0.86012 0.81380 1.90796 1.57986 1.16433 1.76294 1.26227 1.13191 0.97009 1.03567 1.22025 0.95506 1.01027 0.87165 1.66226 1.21244 1.01772 1.30262 1.27702 1.01486 0.95658 1.02572 1.20191 0.93362 0.91952 0.93765 1.58680 1.03762 1.16648 1.58461 1.84472 1.48990 1.05817 1.12276 0.88498 0.96793 0.94978 0.92517 0.92131 0.92860 0.88601 0.79913 0.88926 0.92652 0.83740 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.96 37.16 0.33 -3.13 16 2 C 0.26 6.55 2.63 -69.08 -0.18 6.37 16 3 H 0.07 1.96 6.90 -51.93 -0.36 1.60 16 4 C -0.53 -14.11 8.37 -34.44 -0.29 -14.40 16 5 H 0.06 1.57 7.65 -52.48 -0.40 1.17 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.72 11.32 55.43 0.63 -24.09 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.58 -12.55 2.75 -176.81 -0.49 -13.04 16 13 C 0.08 1.26 8.18 59.85 0.49 1.75 16 14 C 0.58 12.53 7.64 -12.85 -0.10 12.43 16 15 O -0.54 -13.50 16.20 5.20 0.08 -13.42 16 16 C -0.28 -4.81 6.26 -37.09 -0.23 -5.04 16 17 C 0.10 1.63 11.10 -18.85 -0.21 1.42 16 18 N -0.48 -7.15 10.51 -11.50 -0.12 -7.27 16 19 C 0.00 0.00 6.90 -13.29 -0.09 -0.10 16 20 C 0.14 1.27 7.36 -4.97 -0.04 1.24 16 21 N -0.84 -7.02 9.61 -11.41 -0.11 -7.13 16 22 S 0.23 3.03 18.11 -107.50 -1.95 1.08 16 23 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.03 0.68 6.67 -51.93 -0.35 0.33 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.06 0.97 7.87 -51.93 -0.41 0.56 16 28 H 0.05 0.77 4.48 -22.83 -0.10 0.66 16 29 H 0.10 1.58 6.44 -51.93 -0.33 1.24 16 30 H 0.18 2.86 8.06 -52.49 -0.42 2.43 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.35 1.93 9.08 -39.29 -0.36 1.57 16 34 H 0.35 3.04 8.98 -39.29 -0.35 2.68 16 LS Contribution 297.01 15.07 4.48 4.48 Total: -1.00 -31.37 297.01 -6.71 -38.08 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -3.80 Total: 3.28 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.41 Total: 2.25 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.09 Total: -51.54 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.95 Total: 1.08 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.37 -6.71 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720249655.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.650 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds