Wall clock time and date at job start Mon Mar 30 2020 04:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47072 * 2 1 4 4 C 1.50700 * 109.46737 * 119.99757 * 2 1 3 5 5 H 1.08007 * 119.99770 * 120.00254 * 4 2 1 6 6 C 1.37878 * 120.00302 * 300.00146 * 4 2 1 7 7 N 1.31514 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99965 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47382 * 59.99780 * 8 6 4 10 10 H 1.48509 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47330 * 299.99566 * 8 6 4 12 12 N 1.46498 * 109.47160 * 239.99930 * 2 1 3 13 13 C 1.46504 * 119.99703 * 299.99845 * 12 2 1 14 14 C 1.34776 * 120.00066 * 120.00234 * 12 2 1 15 15 O 1.21686 * 120.00021 * 1.31024 * 14 12 2 16 16 C 1.46680 * 119.99799 * 181.30812 * 14 12 2 17 17 C 1.35670 * 126.12576 * 172.05290 * 16 14 12 18 18 N 1.30945 * 114.18882 * 180.02562 * 17 16 14 19 19 C 1.29428 * 117.36126 * 0.02562 * 18 17 16 20 20 C 1.50699 * 124.80026 * 180.02562 * 19 18 17 21 21 N 1.46903 * 109.47239 * 90.02484 * 20 19 18 22 22 S 1.70947 * 110.39504 * 359.72289 * 19 18 17 23 23 H 1.08993 * 109.47350 * 300.00166 * 1 2 3 24 24 H 1.09007 * 109.46552 * 60.00276 * 1 2 3 25 25 H 1.08998 * 109.47072 * 179.97438 * 1 2 3 26 26 H 0.96993 * 120.00195 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.47308 * 263.63745 * 13 12 2 28 28 H 1.09007 * 109.46678 * 143.64153 * 13 12 2 29 29 H 1.08997 * 109.47192 * 23.64137 * 13 12 2 30 30 H 1.07997 * 122.90317 * 0.03834 * 17 16 14 31 31 H 1.09005 * 109.47324 * 210.02016 * 20 19 18 32 32 H 1.08998 * 109.47371 * 330.02230 * 20 19 18 33 33 H 1.00904 * 110.99799 * 180.02562 * 21 20 19 34 34 H 1.00898 * 110.99564 * 303.95252 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8073 -1.1190 4.0078 10 1 1.8267 -0.4198 5.2205 11 1 1.8278 -2.5197 4.0083 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0357 -2.0833 15 8 3.1070 1.1222 -1.8788 16 6 3.2585 -0.7185 -3.2952 17 6 3.9101 -0.1436 -4.3371 18 7 4.2176 -0.9741 -5.3017 19 6 3.8729 -2.2127 -5.1527 20 6 4.1421 -3.3067 -6.1536 21 7 5.4422 -3.9263 -5.8640 22 16 3.0765 -2.4336 -3.6563 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7094 1.1619 3.4843 27 1 2.4703 -2.7349 -1.0717 28 1 1.5132 -2.2582 -2.4947 29 1 0.7466 -2.3300 -0.8899 30 1 4.1543 0.9079 -4.3681 31 1 3.3576 -4.0607 -6.0876 32 1 4.1566 -2.8845 -7.1583 33 1 5.6461 -4.6634 -6.5222 34 1 6.1779 -3.2358 -5.8555 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720249655.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:07 Heat of formation + Delta-G solvation = -5.738226 kcal Electronic energy + Delta-G solvation = -18298.961742 eV Core-core repulsion = 15358.077189 eV Total energy + Delta-G solvation = -2940.884553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.23061 -40.27766 -37.26260 -35.79612 -34.91097 -32.20003 -30.69199 -28.28149 -27.68779 -27.28187 -24.81422 -23.62540 -21.55637 -19.77926 -19.43889 -18.54114 -17.63317 -17.40032 -16.93507 -16.69855 -16.25587 -15.88834 -15.43123 -14.93549 -14.67975 -14.53056 -14.28740 -14.12051 -13.57162 -13.46255 -13.20578 -12.99096 -12.79093 -12.75193 -12.41628 -12.19909 -12.13748 -11.24594 -11.06828 -10.65920 -10.52925 -10.42674 -10.04805 -9.71628 -9.41076 -8.15663 -6.32671 -0.78258 0.17668 0.64082 1.39035 1.43692 1.45721 1.53090 2.12782 2.16904 2.44843 3.01384 3.12814 3.57967 3.77681 3.92360 4.09235 4.24858 4.44161 4.47434 4.60436 4.65493 4.85329 4.88600 4.99913 5.03571 5.40868 5.51005 5.62056 5.97574 6.02111 6.11348 6.48534 6.55388 6.63681 6.73118 7.12658 7.39434 8.88890 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.031333 B = 0.004877 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.420567 B = 5739.667955 C = 6081.935096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.262 3.738 3 H 0.013 0.987 4 C -0.542 4.542 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.966 3.034 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.260 1.260 12 N -0.590 5.590 13 C 0.071 3.929 14 C 0.572 3.428 15 O -0.589 6.589 16 C -0.319 4.319 17 C 0.109 3.891 18 N -0.495 5.495 19 C 0.016 3.984 20 C 0.138 3.862 21 N -0.849 5.849 22 S 0.284 5.716 23 H 0.072 0.928 24 H 0.021 0.979 25 H 0.053 0.947 26 H 0.266 0.734 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.179 0.821 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.366 0.634 34 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.790 -13.447 -15.958 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.161 3.839 3 H 0.031 0.969 4 C -0.580 4.580 5 H 0.080 0.920 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.790 3.210 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.184 1.184 12 N -0.319 5.319 13 C -0.073 4.073 14 C 0.360 3.640 15 O -0.473 6.473 16 C -0.444 4.444 17 C -0.050 4.050 18 N -0.211 5.211 19 C -0.257 4.257 20 C 0.005 3.995 21 N -0.383 5.383 22 S 0.542 5.458 23 H 0.091 0.909 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.195 0.805 31 H 0.136 0.864 32 H 0.087 0.913 33 H 0.183 0.817 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.349 -13.773 -15.023 20.516 hybrid contribution 0.809 1.688 0.072 1.873 sum 3.158 -12.085 -14.951 19.482 Atomic orbital electron populations 1.21915 0.96496 1.00584 1.00283 1.18682 0.92045 0.92315 0.80850 0.96877 1.21505 1.32317 1.13286 0.90918 0.91989 1.25712 0.94927 0.95578 1.01947 1.70004 1.37077 1.23714 1.24645 0.85499 0.78307 0.79122 0.78032 1.20483 1.20891 1.18411 1.48123 1.48220 1.13180 1.22383 1.22066 1.03592 0.80964 1.00708 1.17336 0.78745 0.85612 0.82349 1.90746 1.59868 1.18868 1.77773 1.25774 1.15948 1.00091 1.02543 1.22090 0.94398 1.01343 0.87129 1.66336 1.22447 1.02502 1.29809 1.28486 0.98820 0.95820 1.02586 1.20431 0.94611 0.91436 0.93022 1.58676 1.03303 1.16983 1.59328 1.84031 1.48362 1.01660 1.11736 0.90934 0.95997 0.92800 0.92506 0.90975 0.90146 0.88039 0.80450 0.86358 0.91337 0.81716 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.37 8.96 71.98 0.65 -5.73 16 2 C 0.26 13.71 2.63 44.25 0.12 13.82 16 3 H 0.01 0.83 6.90 -2.39 -0.02 0.81 16 4 C -0.54 -29.24 8.37 25.60 0.21 -29.03 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.92 -52.26 11.32 21.45 0.24 -52.02 16 8 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 12 N -0.59 -25.75 2.75 -831.51 -2.29 -28.03 16 13 C 0.07 2.26 8.18 127.77 1.05 3.30 16 14 C 0.57 25.61 7.64 86.45 0.66 26.27 16 15 O -0.59 -31.62 16.20 -4.30 -0.07 -31.69 16 16 C -0.32 -11.05 6.26 23.88 0.15 -10.90 16 17 C 0.11 3.55 11.10 84.23 0.93 4.49 16 18 N -0.50 -13.89 10.51 -190.30 -2.00 -15.89 16 19 C 0.02 0.37 6.90 88.46 0.61 0.98 16 20 C 0.14 1.94 7.36 85.56 0.63 2.57 16 21 N -0.85 -11.01 9.61 -190.00 -1.83 -12.84 16 22 S 0.28 6.76 18.11 -56.49 -1.02 5.74 16 23 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 24 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.05 2.26 6.67 -2.39 -0.02 2.24 16 26 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 27 H 0.07 2.14 7.87 -2.39 -0.02 2.12 16 28 H 0.08 2.09 4.48 -20.88 -0.09 2.00 16 29 H 0.10 3.12 6.44 -2.39 -0.02 3.11 16 30 H 0.18 5.77 8.06 -2.91 -0.02 5.75 16 31 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.37 2.65 9.08 -89.69 -0.81 1.83 16 34 H 0.35 4.98 8.98 -89.70 -0.81 4.18 16 Total: -1.00 -70.60 297.01 -0.03 -70.63 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -0.55 Total: 12.31 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 5.45 Total: 7.22 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -5.87 Total: -108.79 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.07 Total: -31.69 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 6.76 SS G_CDS: -1.02 Total: 5.74 kcal Total: -70.60 -0.03 -70.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720249655.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.896 kcal (2) G-P(sol) polarization free energy of solvation -70.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds