Wall clock time and date at job start Mon Mar 30 2020 04:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47308 * 2 1 4 4 C 1.46491 * 120.00144 * 262.58256 * 3 2 1 5 5 C 1.50700 * 109.47442 * 269.99829 * 4 3 2 6 6 H 1.07996 * 119.99723 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00229 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00347 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00110 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47100 * 90.00277 * 9 7 5 11 11 H 1.48500 * 109.47335 * 210.00557 * 9 7 5 12 12 H 1.48509 * 109.47102 * 330.00609 * 9 7 5 13 13 C 1.34777 * 119.99585 * 82.58329 * 3 2 1 14 14 O 1.21692 * 119.99393 * 182.51241 * 13 3 2 15 15 C 1.46681 * 120.00526 * 2.50918 * 13 3 2 16 16 C 1.35664 * 126.13289 * 172.44157 * 15 13 3 17 17 N 1.30937 * 114.18941 * 179.75203 * 16 15 13 18 18 C 1.29428 * 117.36539 * 0.51776 * 17 16 15 19 19 C 1.50703 * 124.80330 * 179.76690 * 18 17 16 20 20 N 1.46903 * 109.47129 * 89.69740 * 19 18 17 21 21 S 1.70949 * 110.39004 * 359.50262 * 18 17 16 22 22 H 1.09004 * 109.47457 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47376 * 300.00124 * 1 2 3 24 24 H 1.08998 * 109.47255 * 59.99726 * 1 2 3 25 25 H 1.09003 * 109.46855 * 239.99942 * 2 1 3 26 26 H 1.09003 * 109.46405 * 120.00042 * 2 1 3 27 27 H 1.09004 * 109.47283 * 29.99931 * 4 3 2 28 28 H 1.09004 * 109.47277 * 149.99644 * 4 3 2 29 29 H 0.96995 * 120.00353 * 179.97438 * 8 7 5 30 30 H 1.08003 * 122.89956 * 0.02562 * 16 15 13 31 31 H 1.09004 * 109.47195 * 329.69832 * 19 18 17 32 32 H 1.09003 * 109.47032 * 209.69342 * 19 18 17 33 33 H 1.00901 * 110.99649 * 179.97438 * 20 19 18 34 34 H 1.00898 * 110.99978 * 303.95656 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4170 2.0172 -1.2580 5 6 3.8820 1.7656 -1.5060 6 1 4.4584 1.1893 -0.7976 7 6 4.4862 2.2704 -2.6378 8 7 3.7843 2.9719 -3.5008 9 14 6.3020 1.9580 -2.9456 10 1 6.4637 0.7019 -3.7211 11 1 6.8761 3.0916 -3.7141 12 1 7.0099 1.8321 -1.6461 13 6 2.1010 2.0667 1.1575 14 8 2.4631 3.2284 1.1520 15 6 1.7543 1.4125 2.4237 16 6 1.9271 1.9308 3.6655 17 7 1.5301 1.1452 4.6348 18 6 1.0422 -0.0072 4.3046 19 6 0.5415 -1.0409 5.2804 20 7 -0.8870 -0.8176 5.5402 21 16 1.0393 -0.1878 2.6047 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 1.8327 1.5990 -2.0777 28 1 2.2382 3.0906 -1.1951 29 1 4.2094 3.3273 -4.2969 30 1 2.3512 2.9088 3.8392 31 1 1.0979 -0.9587 6.2141 32 1 0.6830 -2.0364 4.8595 33 1 -1.2467 -1.4989 6.1918 34 1 -1.0520 0.1214 5.8703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720250631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:29 Heat of formation + Delta-G solvation = 16.189081 kcal Electronic energy + Delta-G solvation = -18345.213407 eV Core-core repulsion = 15405.279693 eV Total energy + Delta-G solvation = -2939.933714 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82420 -38.80575 -35.48335 -35.00011 -32.93172 -30.59885 -30.08221 -27.69615 -26.44842 -23.84923 -23.21329 -22.84218 -20.47899 -18.60540 -17.95624 -16.58743 -16.44417 -16.28047 -15.61037 -15.13244 -14.73156 -14.57498 -14.17424 -13.74051 -13.63339 -13.44306 -12.88612 -12.45867 -12.38949 -12.12996 -11.77781 -11.48450 -11.24702 -11.16108 -10.90880 -10.63486 -10.19817 -9.73304 -9.58828 -9.21588 -9.13335 -9.00466 -8.68238 -8.47726 -7.79848 -6.09019 -4.14416 0.45170 1.38059 1.81969 2.70455 3.27921 3.34983 3.39109 3.68952 3.79171 4.02983 4.41186 4.43394 4.84794 4.93975 5.12220 5.18813 5.26300 5.36827 5.41019 5.52668 5.63291 5.90717 6.06585 6.25250 6.37165 6.64737 6.94348 7.03234 7.34382 7.41533 7.76060 7.86665 8.15765 8.22420 8.77897 8.93892 9.50933 10.99077 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.033235 B = 0.004916 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.292029 B = 5694.551091 C = 5906.160422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 N -0.588 5.588 4 C 0.247 3.753 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.581 3.419 14 O -0.525 6.525 15 C -0.278 4.278 16 C 0.101 3.899 17 N -0.481 5.481 18 C -0.007 4.007 19 C 0.141 3.859 20 N -0.843 5.843 21 S 0.236 5.764 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.264 0.736 30 H 0.184 0.816 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.348 0.652 34 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 -11.129 13.653 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.029 4.029 3 N -0.319 5.319 4 C 0.129 3.871 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.366 3.634 14 O -0.403 6.403 15 C -0.403 4.403 16 C -0.056 4.056 17 N -0.196 5.196 18 C -0.281 4.281 19 C 0.007 3.993 20 N -0.375 5.375 21 S 0.494 5.506 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.119 0.881 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.201 0.799 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.162 0.838 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.004 -11.272 12.596 19.152 hybrid contribution 1.748 0.851 0.942 2.160 sum -7.257 -10.422 13.538 18.562 Atomic orbital electron populations 1.22435 0.95894 1.02559 1.02812 1.21733 0.94228 0.84590 1.02381 1.48178 1.62291 1.12578 1.08817 1.19385 0.95290 0.94724 0.77748 1.21418 0.94609 1.34357 1.06560 0.92370 1.24922 0.98433 0.94779 0.95803 1.69924 1.36333 1.35193 1.11729 0.86482 0.84795 0.77782 0.78298 1.20572 1.21010 1.19861 1.16755 0.78847 0.86047 0.81767 1.90812 1.47636 1.15915 1.85933 1.26266 1.13687 0.99989 1.00374 1.22028 0.97765 1.00395 0.85453 1.66225 1.13433 1.03229 1.36744 1.27779 1.01929 0.96929 1.01431 1.20191 0.88831 0.94769 0.95481 1.58675 1.14551 1.09367 1.54951 1.84575 1.53378 1.13451 0.99230 0.91086 0.92282 0.91269 0.88102 0.91793 0.94519 0.93400 0.92606 0.79937 0.92700 0.88972 0.83786 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.97 37.16 0.33 -2.03 16 2 C 0.10 1.56 5.68 -4.04 -0.02 1.54 16 3 N -0.59 -12.57 2.48 -176.61 -0.44 -13.01 16 4 C 0.25 6.38 5.15 -5.20 -0.03 6.35 16 5 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.58 12.73 7.58 -12.85 -0.10 12.63 16 14 O -0.52 -13.55 16.44 5.20 0.09 -13.46 16 15 C -0.28 -4.90 6.12 -37.10 -0.23 -5.13 16 16 C 0.10 1.68 11.10 -18.85 -0.21 1.47 16 17 N -0.48 -7.27 10.51 -11.50 -0.12 -7.40 16 18 C -0.01 -0.09 6.90 -13.29 -0.09 -0.18 16 19 C 0.14 1.28 7.36 -4.97 -0.04 1.24 16 20 N -0.84 -6.80 9.61 -11.40 -0.11 -6.91 16 21 S 0.24 3.09 15.64 -107.50 -1.68 1.41 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.80 6.09 -47.84 -0.29 0.51 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.10 1.61 8.02 -51.93 -0.42 1.20 16 26 H 0.07 0.94 4.43 -22.38 -0.10 0.84 16 27 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.05 1.39 7.39 -51.93 -0.38 1.01 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.18 2.95 8.06 -52.48 -0.42 2.53 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.35 1.85 9.08 -39.29 -0.36 1.50 16 34 H 0.35 2.94 8.99 -39.29 -0.35 2.59 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -33.18 301.31 -6.78 -39.96 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -3.98 Total: 1.31 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -0.80 Total: 2.37 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.07 Total: -52.77 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.68 Total: 1.41 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.18 -6.78 -39.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720250631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.152 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds