Wall clock time and date at job start Mon Mar 30 2020 04:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47308 * 2 1 4 4 C 1.46491 * 120.00144 * 262.58256 * 3 2 1 5 5 C 1.50700 * 109.47442 * 269.99829 * 4 3 2 6 6 H 1.07996 * 119.99723 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00229 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00347 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00110 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47100 * 90.00277 * 9 7 5 11 11 H 1.48500 * 109.47335 * 210.00557 * 9 7 5 12 12 H 1.48509 * 109.47102 * 330.00609 * 9 7 5 13 13 C 1.34777 * 119.99585 * 82.58329 * 3 2 1 14 14 O 1.21692 * 119.99393 * 182.51241 * 13 3 2 15 15 C 1.46681 * 120.00526 * 2.50918 * 13 3 2 16 16 C 1.35664 * 126.13289 * 172.44157 * 15 13 3 17 17 N 1.30937 * 114.18941 * 179.75203 * 16 15 13 18 18 C 1.29428 * 117.36539 * 0.51776 * 17 16 15 19 19 C 1.50703 * 124.80330 * 179.76690 * 18 17 16 20 20 N 1.46903 * 109.47129 * 89.69740 * 19 18 17 21 21 S 1.70949 * 110.39004 * 359.50262 * 18 17 16 22 22 H 1.09004 * 109.47457 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47376 * 300.00124 * 1 2 3 24 24 H 1.08998 * 109.47255 * 59.99726 * 1 2 3 25 25 H 1.09003 * 109.46855 * 239.99942 * 2 1 3 26 26 H 1.09003 * 109.46405 * 120.00042 * 2 1 3 27 27 H 1.09004 * 109.47283 * 29.99931 * 4 3 2 28 28 H 1.09004 * 109.47277 * 149.99644 * 4 3 2 29 29 H 0.96995 * 120.00353 * 179.97438 * 8 7 5 30 30 H 1.08003 * 122.89956 * 0.02562 * 16 15 13 31 31 H 1.09004 * 109.47195 * 329.69832 * 19 18 17 32 32 H 1.09003 * 109.47032 * 209.69342 * 19 18 17 33 33 H 1.00901 * 110.99649 * 179.97438 * 20 19 18 34 34 H 1.00898 * 110.99978 * 303.95656 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4170 2.0172 -1.2580 5 6 3.8820 1.7656 -1.5060 6 1 4.4584 1.1893 -0.7976 7 6 4.4862 2.2704 -2.6378 8 7 3.7843 2.9719 -3.5008 9 14 6.3020 1.9580 -2.9456 10 1 6.4637 0.7019 -3.7211 11 1 6.8761 3.0916 -3.7141 12 1 7.0099 1.8321 -1.6461 13 6 2.1010 2.0667 1.1575 14 8 2.4631 3.2284 1.1520 15 6 1.7543 1.4125 2.4237 16 6 1.9271 1.9308 3.6655 17 7 1.5301 1.1452 4.6348 18 6 1.0422 -0.0072 4.3046 19 6 0.5415 -1.0409 5.2804 20 7 -0.8870 -0.8176 5.5402 21 16 1.0393 -0.1878 2.6047 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 1.8327 1.5990 -2.0777 28 1 2.2382 3.0906 -1.1951 29 1 4.2094 3.3273 -4.2969 30 1 2.3512 2.9088 3.8392 31 1 1.0979 -0.9587 6.2141 32 1 0.6830 -2.0364 4.8595 33 1 -1.2467 -1.4989 6.1918 34 1 -1.0520 0.1214 5.8703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720250631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:29 Heat of formation + Delta-G solvation = -9.820656 kcal Electronic energy + Delta-G solvation = -18346.341273 eV Core-core repulsion = 15405.279693 eV Total energy + Delta-G solvation = -2941.061581 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.21631 -40.27993 -37.16498 -35.78445 -34.98947 -32.13587 -31.35981 -29.31687 -27.78993 -25.40959 -24.64045 -24.12976 -21.95225 -19.81271 -19.39330 -18.63017 -17.72230 -17.60409 -16.85570 -16.56476 -16.26044 -15.81304 -15.64646 -15.16835 -14.73241 -14.68598 -14.22513 -14.11668 -13.74592 -13.36527 -13.21445 -13.16597 -12.74359 -12.64428 -12.52356 -12.39947 -12.15870 -11.77821 -11.07818 -10.67079 -10.57657 -10.37612 -9.88944 -9.72704 -9.49738 -8.24908 -6.39943 -0.77233 0.19313 0.65874 1.36235 1.39474 1.41885 1.50122 2.07703 2.21808 2.39582 3.02184 3.05593 3.54436 3.78453 3.86971 3.93357 4.18417 4.24419 4.43444 4.44873 4.61053 4.82073 4.83547 4.96366 5.04748 5.17037 5.28202 5.48141 5.74798 6.00936 6.02633 6.47074 6.52709 6.63593 6.67990 7.13301 7.32697 8.82588 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.033235 B = 0.004916 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.292029 B = 5694.551091 C = 5906.160422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.088 3.912 3 N -0.593 5.593 4 C 0.263 3.737 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.575 3.425 14 O -0.584 6.584 15 C -0.325 4.325 16 C 0.108 3.892 17 N -0.498 5.498 18 C 0.007 3.993 19 C 0.138 3.862 20 N -0.846 5.846 21 S 0.305 5.695 22 H 0.113 0.887 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.034 0.966 28 H 0.002 0.998 29 H 0.269 0.731 30 H 0.175 0.825 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.366 0.634 34 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 -14.277 14.935 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.036 4.036 3 N -0.323 5.323 4 C 0.142 3.858 5 C -0.586 4.586 6 H 0.071 0.929 7 C -0.187 4.187 8 N -0.565 5.565 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.363 3.637 14 O -0.466 6.466 15 C -0.449 4.449 16 C -0.051 4.051 17 N -0.213 5.213 18 C -0.267 4.267 19 C 0.005 3.995 20 N -0.381 5.381 21 S 0.564 5.436 22 H 0.132 0.868 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.121 0.879 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.020 0.980 29 H 0.078 0.922 30 H 0.192 0.808 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.182 0.818 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.457 -14.504 13.886 22.195 hybrid contribution 1.778 1.753 0.648 2.580 sum -7.679 -12.751 14.534 20.804 Atomic orbital electron populations 1.22408 0.93326 1.05092 1.02170 1.22085 0.96290 0.81689 1.03504 1.48152 1.62266 1.14551 1.07358 1.18860 0.94654 0.92502 0.79794 1.21667 0.95672 1.34592 1.06710 0.92922 1.25819 1.03177 0.94291 0.95459 1.70037 1.38336 1.35868 1.12224 0.85414 0.78842 0.78420 0.78122 1.18519 1.20567 1.20021 1.17291 0.77746 0.85563 0.83099 1.90755 1.50306 1.18489 1.87058 1.25801 1.17349 1.03456 0.98307 1.22062 0.96884 1.00469 0.85689 1.66332 1.14878 1.04132 1.36005 1.28590 0.99163 0.96564 1.02334 1.20423 0.89519 0.94432 0.95118 1.58669 1.13641 1.09893 1.55855 1.84054 1.51440 1.09285 0.98817 0.86797 0.92525 0.92398 0.87922 0.89908 0.94775 0.97964 0.92246 0.80764 0.91623 0.86369 0.81755 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 8.97 71.98 0.65 -3.55 16 2 C 0.09 2.76 5.68 86.38 0.49 3.25 16 3 N -0.59 -26.19 2.48 -830.88 -2.06 -28.25 16 4 C 0.26 14.24 5.15 85.63 0.44 14.68 16 5 C -0.55 -31.66 9.39 25.60 0.24 -31.42 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.69 5.46 84.65 0.46 1.15 16 8 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 9 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 10 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.58 26.34 7.58 86.45 0.66 26.99 16 14 O -0.58 -32.30 16.44 -4.32 -0.07 -32.37 16 15 C -0.32 -11.46 6.12 23.88 0.15 -11.31 16 16 C 0.11 3.63 11.10 84.23 0.93 4.56 16 17 N -0.50 -14.30 10.51 -190.30 -2.00 -16.30 16 18 C 0.01 0.15 6.90 88.46 0.61 0.76 16 19 C 0.14 1.94 7.36 85.56 0.63 2.57 16 20 N -0.85 -10.47 9.61 -189.99 -1.83 -12.29 16 21 S 0.30 7.16 15.64 -56.49 -0.88 6.27 16 22 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 23 H 0.06 1.42 6.09 -4.98 -0.03 1.39 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.10 3.17 8.02 -2.39 -0.02 3.15 16 26 H 0.08 2.25 4.43 -21.17 -0.09 2.16 16 27 H 0.03 1.84 8.07 -2.38 -0.02 1.82 16 28 H 0.00 0.14 7.39 -2.38 -0.02 0.12 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.18 5.94 8.06 -2.91 -0.02 5.92 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.37 2.45 9.08 -89.69 -0.81 1.64 16 34 H 0.35 4.79 8.99 -89.70 -0.81 3.98 16 Total: -1.00 -75.58 301.31 0.15 -75.42 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -0.57 Total: 8.32 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 5.26 Total: 7.70 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -5.60 Total: -112.12 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.07 Total: -32.37 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 7.16 SS G_CDS: -0.88 Total: 6.27 kcal Total: -75.58 0.15 -75.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720250631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.604 kcal (2) G-P(sol) polarization free energy of solvation -75.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds