Wall clock time and date at job start Mon Mar 30 2020 04:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47428 * 11.06055 * 3 2 1 5 5 C 1.36836 * 120.00193 * 282.66699 * 4 3 2 6 6 H 1.07994 * 120.00409 * 253.45248 * 5 4 3 7 7 C 1.39037 * 119.99963 * 73.44786 * 5 4 3 8 8 N 1.31374 * 120.00009 * 65.50365 * 7 5 4 9 9 Si 1.86803 * 120.00415 * 245.50225 * 7 5 4 10 10 H 1.48505 * 109.46524 * 60.00088 * 9 7 5 11 11 H 1.48498 * 109.47574 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46896 * 300.00299 * 9 7 5 13 13 C 1.34778 * 120.00097 * 102.66368 * 4 3 2 14 14 O 1.21683 * 120.00079 * 185.03090 * 13 4 3 15 15 C 1.47106 * 120.00044 * 5.03107 * 13 4 3 16 16 C 1.39065 * 120.90903 * 326.78341 * 15 13 4 17 17 C 1.39725 * 119.17243 * 179.97438 * 16 15 13 18 18 C 1.35106 * 121.28573 * 359.97438 * 17 16 15 19 19 N 1.36261 * 121.78139 * 0.02562 * 18 17 16 20 20 N 1.40085 * 132.48018 * 179.97438 * 19 18 17 21 21 C 1.31347 * 108.87765 * 180.02562 * 20 19 18 22 22 C 1.38901 * 108.94420 * 0.26750 * 21 20 19 23 23 C 1.37165 * 120.19270 * 0.02562 * 19 18 17 24 24 H 4.40635 * 5.51384 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.47250 * 251.06156 * 3 2 1 26 26 H 1.09001 * 109.47238 * 131.06522 * 3 2 1 27 27 H 0.97005 * 120.00591 * 179.97438 * 8 7 5 28 28 H 1.07994 * 120.41591 * 359.97438 * 16 15 13 29 29 H 1.08000 * 119.35686 * 179.97438 * 17 16 15 30 30 H 1.08002 * 119.11039 * 180.02562 * 18 17 16 31 31 H 1.08001 * 125.52560 * 180.02562 * 21 20 19 32 32 H 1.07999 * 126.22207 * 179.73003 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3546 -0.2650 5 6 3.1185 -2.2945 0.7294 6 1 4.0410 -2.5956 1.2033 7 6 1.9140 -2.8620 1.1297 8 7 1.2337 -3.6156 0.2958 9 14 1.2629 -2.5531 2.8531 10 1 1.0560 -1.0958 3.0501 11 1 -0.0287 -3.2643 3.0293 12 1 2.2438 -3.0530 3.8497 13 6 3.6010 -1.6758 -1.4881 14 8 3.9214 -2.8234 -1.7352 15 6 3.7223 -0.6389 -2.5246 16 6 2.8207 0.4180 -2.5867 17 6 2.9703 1.3831 -3.5860 18 6 3.9721 1.3080 -4.4895 19 7 4.8806 0.2927 -4.4710 20 7 5.9855 -0.0029 -5.2798 21 6 6.5464 -1.1084 -4.8456 22 6 5.8322 -1.5762 -3.7500 23 6 4.7960 -0.6914 -3.5193 24 1 -1.0498 -0.0004 -0.0003 25 1 3.0092 0.3344 0.9721 26 1 3.0090 0.6759 -0.7748 27 1 0.3935 -4.0118 0.5751 28 1 2.0150 0.4921 -1.8715 29 1 2.2716 2.2049 -3.6372 30 1 4.0550 2.0735 -5.2469 31 1 7.4189 -1.5795 -5.2736 32 1 6.0487 -2.4679 -3.1804 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723503819.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:24 Heat of formation + Delta-G solvation = 177.074313 kcal Electronic energy + Delta-G solvation = -19907.064115 eV Core-core repulsion = 16838.662957 eV Total energy + Delta-G solvation = -3068.401158 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60361 -38.76480 -36.63801 -35.09737 -33.05344 -32.10409 -31.57599 -30.36671 -28.37440 -26.53248 -25.32622 -23.46754 -22.36255 -21.39116 -19.48283 -17.97495 -17.25372 -16.89225 -16.76897 -15.68827 -15.39021 -15.07385 -14.84502 -14.53489 -14.09747 -13.51636 -13.27213 -12.87979 -12.72219 -12.50592 -12.03917 -11.77973 -11.70854 -11.35659 -11.02886 -10.69911 -10.54079 -10.39893 -10.01941 -9.86912 -9.51660 -9.07063 -8.66207 -8.27424 -7.46794 -7.26335 -6.56836 -4.05908 0.78215 1.35981 2.45699 2.97877 3.11938 3.27776 3.29888 3.35431 3.36590 3.44234 4.14941 4.26018 4.43722 4.47769 4.68531 4.92488 4.95574 5.03464 5.15426 5.44649 5.67074 5.73258 5.88639 5.93369 6.10237 6.28783 6.31578 6.41676 6.50725 6.57502 6.91964 7.08590 7.37240 7.78248 8.20780 8.49476 8.67140 9.20509 9.22073 10.08214 10.24383 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028189 B = 0.006453 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.047517 B = 4338.096824 C = 5030.134656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.170 4.170 3 C 0.174 3.826 4 N -0.427 5.427 5 C -0.444 4.444 6 H 0.085 0.915 7 C 0.145 3.855 8 N -0.729 5.729 9 Si 0.826 3.174 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.523 3.477 14 O -0.524 6.524 15 C -0.095 4.095 16 C -0.089 4.089 17 C -0.165 4.165 18 C 0.109 3.891 19 N -0.283 5.283 20 N -0.329 5.329 21 C 0.071 3.929 22 C -0.259 4.259 23 C 0.127 3.873 24 H 0.208 0.792 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.269 0.731 28 H 0.162 0.838 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.191 0.809 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 10.736 -5.484 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.171 4.171 3 C 0.052 3.948 4 N -0.149 5.149 5 C -0.564 4.564 6 H 0.102 0.898 7 C -0.081 4.081 8 N -0.351 5.351 9 Si 0.648 3.352 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.192 1.192 13 C 0.311 3.689 14 O -0.402 6.402 15 C -0.100 4.100 16 C -0.112 4.112 17 C -0.187 4.187 18 C -0.016 4.016 19 N -0.051 5.051 20 N -0.153 5.153 21 C -0.106 4.106 22 C -0.288 4.288 23 C 0.008 3.992 24 H 0.225 0.775 25 H 0.107 0.893 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.179 0.821 29 H 0.171 0.829 30 H 0.180 0.820 31 H 0.208 0.792 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.209 10.853 -6.702 12.813 hybrid contribution -0.983 -0.480 1.467 1.830 sum 0.226 10.373 -5.235 11.622 Atomic orbital electron populations 1.24676 0.95737 1.01528 1.02288 1.23831 0.95162 0.99150 0.98962 1.19540 0.83432 0.89144 1.02715 1.42825 1.56547 1.07789 1.07709 1.18087 0.93692 1.27094 1.17507 0.89760 1.25414 0.96352 0.89391 0.96907 1.70898 1.11944 1.12873 1.39342 0.87626 0.78263 0.80461 0.88852 1.18879 1.21446 1.19162 1.18497 0.81810 0.86727 0.81871 1.90688 1.50827 1.19943 1.78751 1.21466 0.94312 0.97384 0.96873 1.22417 0.99189 0.92109 0.97453 1.20656 0.99359 1.02229 0.96497 1.21321 0.88972 0.90805 1.00539 1.46149 1.20298 1.17474 1.21171 1.77725 0.99777 1.20400 1.17379 1.23830 0.99081 0.92648 0.94997 1.21441 0.98866 1.04609 1.03891 1.20374 0.96990 0.90723 0.91075 0.77458 0.89256 0.88428 0.91992 0.82065 0.82897 0.82018 0.79240 0.82068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.98 19.25 29.55 0.57 -3.41 16 2 C -0.17 -3.30 10.91 -37.13 -0.40 -3.71 16 3 C 0.17 3.39 5.41 -6.83 -0.04 3.36 16 4 N -0.43 -10.45 2.55 -119.28 -0.30 -10.75 16 5 C -0.44 -12.08 8.19 -15.02 -0.12 -12.20 16 6 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.14 3.82 4.47 -17.45 -0.08 3.74 16 8 N -0.73 -20.08 13.95 55.50 0.77 -19.31 16 9 Si 0.83 18.92 29.69 -169.99 -5.05 13.87 16 10 H -0.26 -5.94 7.11 56.52 0.40 -5.53 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.52 13.09 7.37 -12.66 -0.09 12.99 16 14 O -0.52 -15.20 16.07 5.20 0.08 -15.12 16 15 C -0.09 -1.93 5.66 -102.69 -0.58 -2.51 16 16 C -0.09 -1.46 7.53 -38.72 -0.29 -1.75 16 17 C -0.17 -2.07 9.90 -40.14 -0.40 -2.47 16 18 C 0.11 1.45 11.12 -16.70 -0.19 1.26 16 19 N -0.28 -4.86 3.89 -9.40 -0.04 -4.90 16 20 N -0.33 -5.58 12.66 30.51 0.39 -5.19 16 21 C 0.07 1.12 11.95 -17.51 -0.21 0.91 16 22 C -0.26 -4.87 10.36 -39.35 -0.41 -5.28 16 23 C 0.13 2.51 6.82 -82.19 -0.56 1.95 16 24 H 0.21 2.90 7.80 -54.10 -0.42 2.48 16 25 H 0.09 1.64 8.13 -51.93 -0.42 1.22 16 26 H 0.10 1.62 4.03 -51.93 -0.21 1.41 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.16 2.62 3.81 -52.49 -0.20 2.42 16 29 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.19 2.12 8.06 -52.49 -0.42 1.69 16 32 H 0.16 3.15 7.67 -52.49 -0.40 2.74 16 LS Contribution 291.07 15.07 4.39 4.39 Total: -1.00 -34.07 291.07 -5.04 -39.11 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -2.48 Total: 5.01 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.80 Total: -7.11 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.82 Total: -40.15 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.08 Total: -15.12 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.05 Total: 13.87 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.07 -5.04 -39.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723503819.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.187 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds