Wall clock time and date at job start Mon Mar 30 2020 04:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47428 * 11.06055 * 3 2 1 5 5 C 1.36836 * 120.00193 * 282.66699 * 4 3 2 6 6 H 1.07994 * 120.00409 * 253.45248 * 5 4 3 7 7 C 1.39037 * 119.99963 * 73.44786 * 5 4 3 8 8 N 1.31374 * 120.00009 * 65.50365 * 7 5 4 9 9 Si 1.86803 * 120.00415 * 245.50225 * 7 5 4 10 10 H 1.48505 * 109.46524 * 60.00088 * 9 7 5 11 11 H 1.48498 * 109.47574 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46896 * 300.00299 * 9 7 5 13 13 C 1.34778 * 120.00097 * 102.66368 * 4 3 2 14 14 O 1.21683 * 120.00079 * 185.03090 * 13 4 3 15 15 C 1.47106 * 120.00044 * 5.03107 * 13 4 3 16 16 C 1.39065 * 120.90903 * 326.78341 * 15 13 4 17 17 C 1.39725 * 119.17243 * 179.97438 * 16 15 13 18 18 C 1.35106 * 121.28573 * 359.97438 * 17 16 15 19 19 N 1.36261 * 121.78139 * 0.02562 * 18 17 16 20 20 N 1.40085 * 132.48018 * 179.97438 * 19 18 17 21 21 C 1.31347 * 108.87765 * 180.02562 * 20 19 18 22 22 C 1.38901 * 108.94420 * 0.26750 * 21 20 19 23 23 C 1.37165 * 120.19270 * 0.02562 * 19 18 17 24 24 H 4.40635 * 5.51384 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.47250 * 251.06156 * 3 2 1 26 26 H 1.09001 * 109.47238 * 131.06522 * 3 2 1 27 27 H 0.97005 * 120.00591 * 179.97438 * 8 7 5 28 28 H 1.07994 * 120.41591 * 359.97438 * 16 15 13 29 29 H 1.08000 * 119.35686 * 179.97438 * 17 16 15 30 30 H 1.08002 * 119.11039 * 180.02562 * 18 17 16 31 31 H 1.08001 * 125.52560 * 180.02562 * 21 20 19 32 32 H 1.07999 * 126.22207 * 179.73003 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3546 -0.2650 5 6 3.1185 -2.2945 0.7294 6 1 4.0410 -2.5956 1.2033 7 6 1.9140 -2.8620 1.1297 8 7 1.2337 -3.6156 0.2958 9 14 1.2629 -2.5531 2.8531 10 1 1.0560 -1.0958 3.0501 11 1 -0.0287 -3.2643 3.0293 12 1 2.2438 -3.0530 3.8497 13 6 3.6010 -1.6758 -1.4881 14 8 3.9214 -2.8234 -1.7352 15 6 3.7223 -0.6389 -2.5246 16 6 2.8207 0.4180 -2.5867 17 6 2.9703 1.3831 -3.5860 18 6 3.9721 1.3080 -4.4895 19 7 4.8806 0.2927 -4.4710 20 7 5.9855 -0.0029 -5.2798 21 6 6.5464 -1.1084 -4.8456 22 6 5.8322 -1.5762 -3.7500 23 6 4.7960 -0.6914 -3.5193 24 1 -1.0498 -0.0004 -0.0003 25 1 3.0092 0.3344 0.9721 26 1 3.0090 0.6759 -0.7748 27 1 0.3935 -4.0118 0.5751 28 1 2.0150 0.4921 -1.8715 29 1 2.2716 2.2049 -3.6372 30 1 4.0550 2.0735 -5.2469 31 1 7.4189 -1.5795 -5.2736 32 1 6.0487 -2.4679 -3.1804 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723503819.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:23 Heat of formation + Delta-G solvation = 154.463098 kcal Electronic energy + Delta-G solvation = -19908.044611 eV Core-core repulsion = 16838.662957 eV Total energy + Delta-G solvation = -3069.381654 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.90724 -40.47861 -37.98613 -36.88812 -34.83563 -33.56391 -33.26108 -31.62808 -29.75770 -28.14429 -27.06487 -24.95787 -23.65366 -22.80884 -21.10623 -19.59329 -18.81943 -18.38273 -18.17034 -17.10207 -16.85820 -16.66386 -16.36479 -16.21779 -15.71584 -15.01142 -14.78757 -14.37907 -14.13694 -14.09602 -13.82564 -13.47171 -13.18674 -12.80573 -12.52346 -12.40377 -12.15835 -11.89663 -11.50081 -11.33962 -11.00756 -10.60676 -10.33445 -10.21741 -9.41573 -8.66628 -8.47279 -6.12047 -0.51919 0.07485 1.23767 1.30312 1.43144 1.51236 1.70112 1.77603 1.92799 2.01865 2.32144 2.48204 2.62475 3.04327 3.35218 3.52253 3.67406 3.81790 3.96237 4.07647 4.39573 4.44431 4.53262 4.65711 4.77744 4.82338 5.01855 5.15384 5.15756 5.29904 5.39475 5.56973 5.85438 6.40379 6.50618 6.75212 6.80858 7.20696 7.35347 8.17305 8.29017 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028189 B = 0.006453 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.047517 B = 4338.096824 C = 5030.134656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.213 4.213 3 C 0.178 3.822 4 N -0.436 5.436 5 C -0.480 4.480 6 H 0.051 0.949 7 C 0.117 3.883 8 N -0.774 5.774 9 Si 0.902 3.098 10 H -0.250 1.250 11 H -0.279 1.279 12 H -0.268 1.268 13 C 0.510 3.490 14 O -0.591 6.591 15 C -0.150 4.150 16 C -0.057 4.057 17 C -0.158 4.158 18 C 0.121 3.879 19 N -0.288 5.288 20 N -0.336 5.336 21 C 0.090 3.910 22 C -0.300 4.300 23 C 0.111 3.889 24 H 0.244 0.756 25 H 0.096 0.904 26 H 0.126 0.874 27 H 0.278 0.722 28 H 0.166 0.834 29 H 0.211 0.789 30 H 0.212 0.788 31 H 0.231 0.769 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 14.323 -6.215 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.215 4.215 3 C 0.056 3.944 4 N -0.156 5.156 5 C -0.601 4.601 6 H 0.068 0.932 7 C -0.107 4.107 8 N -0.398 5.398 9 Si 0.723 3.277 10 H -0.174 1.174 11 H -0.204 1.204 12 H -0.193 1.193 13 C 0.301 3.699 14 O -0.474 6.474 15 C -0.156 4.156 16 C -0.080 4.080 17 C -0.179 4.179 18 C -0.004 4.004 19 N -0.056 5.056 20 N -0.159 5.159 21 C -0.087 4.087 22 C -0.329 4.329 23 C -0.008 4.008 24 H 0.261 0.739 25 H 0.114 0.886 26 H 0.143 0.857 27 H 0.089 0.911 28 H 0.183 0.817 29 H 0.228 0.772 30 H 0.228 0.772 31 H 0.247 0.753 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.670 14.491 -7.404 16.286 hybrid contribution -0.431 -1.528 1.599 2.253 sum -1.101 12.963 -5.805 14.246 Atomic orbital electron populations 1.25552 0.96597 0.99145 1.00323 1.23881 0.95519 1.01190 1.00863 1.19575 0.84162 0.86545 1.04070 1.43080 1.56337 1.09232 1.06993 1.18008 0.93286 1.29964 1.18801 0.93173 1.26151 0.95974 0.88115 1.00465 1.70887 1.12927 1.14011 1.41950 0.86481 0.77596 0.80865 0.82784 1.17360 1.20410 1.19330 1.19203 0.80485 0.87130 0.83130 1.90611 1.53574 1.22873 1.80299 1.20944 0.97861 0.98970 0.97816 1.22649 0.96968 0.90847 0.97525 1.21224 0.99985 1.02285 0.94451 1.22384 0.87153 0.89908 1.00922 1.46477 1.20941 1.17709 1.20424 1.77674 0.99975 1.20712 1.17499 1.24359 0.99293 0.91775 0.93252 1.21431 1.00761 1.04850 1.05828 1.20384 0.96999 0.91800 0.91651 0.73939 0.88579 0.85727 0.91123 0.81733 0.77219 0.77155 0.75258 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.43 19.25 74.32 1.43 -4.99 16 2 C -0.21 -7.94 10.91 31.12 0.34 -7.60 16 3 C 0.18 6.92 5.41 84.57 0.46 7.38 16 4 N -0.44 -22.37 2.55 -649.53 -1.66 -24.03 16 5 C -0.48 -27.63 8.19 84.10 0.69 -26.94 16 6 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 7 C 0.12 6.31 4.47 84.95 0.38 6.69 16 8 N -0.77 -43.99 13.95 21.68 0.30 -43.68 16 9 Si 0.90 39.51 29.69 68.60 2.04 41.55 16 10 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 C 0.51 27.28 7.37 86.57 0.64 27.92 16 14 O -0.59 -37.52 16.07 -4.30 -0.07 -37.59 16 15 C -0.15 -6.32 5.66 -18.61 -0.11 -6.42 16 16 C -0.06 -1.76 7.53 22.83 0.17 -1.58 16 17 C -0.16 -3.20 9.90 21.91 0.22 -2.99 16 18 C 0.12 2.67 11.12 83.28 0.93 3.60 16 19 N -0.29 -9.35 3.89 -183.64 -0.71 -10.07 16 20 N -0.34 -10.76 12.66 -57.39 -0.73 -11.49 16 21 C 0.09 2.80 11.95 84.92 1.01 3.82 16 22 C -0.30 -11.96 10.36 22.42 0.23 -11.73 16 23 C 0.11 4.48 6.82 40.44 0.28 4.76 16 24 H 0.24 5.70 7.80 -4.43 -0.03 5.66 16 25 H 0.10 3.52 8.13 -2.38 -0.02 3.50 16 26 H 0.13 4.01 4.03 -2.39 -0.01 4.01 16 27 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 28 H 0.17 4.98 3.81 -2.91 -0.01 4.96 16 29 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 30 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.23 4.79 8.06 -2.91 -0.02 4.76 16 32 H 0.14 5.97 7.67 -2.91 -0.02 5.94 16 Total: -1.00 -82.14 291.07 7.00 -75.14 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.16 Total: 18.28 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 6.67 Total: -8.11 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -2.80 Total: -89.27 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.07 Total: -37.59 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.04 Total: 41.55 kcal Total: -82.14 7.00 -75.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723503819.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.599 kcal (2) G-P(sol) polarization free energy of solvation -82.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds