Wall clock time and date at job start Mon Mar 30 2020 05:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48500 * 109.46927 * 269.99913 * 3 2 1 5 5 H 1.48499 * 109.47224 * 29.99839 * 3 2 1 6 6 H 1.48500 * 109.47239 * 150.00007 * 3 2 1 7 7 C 1.37874 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00368 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99942 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99888 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99788 * 179.97438 * 11 10 9 14 14 O 1.42909 * 109.46868 * 180.02562 * 13 11 10 15 15 C 1.34923 * 116.99628 * 180.02562 * 14 13 11 16 16 O 1.21663 * 120.00761 * 359.97438 * 15 14 13 17 17 C 1.41574 * 119.99732 * 180.02562 * 15 14 13 18 18 C 1.33584 * 118.79437 * 180.02562 * 17 15 14 19 19 O 1.34307 * 123.06386 * 180.13031 * 18 17 15 20 20 C 1.45353 * 117.48473 * 343.65289 * 19 18 17 21 21 C 1.53479 * 108.26764 * 47.50636 * 20 19 18 22 22 C 1.50412 * 118.79293 * 359.72568 * 17 15 14 23 23 H 0.96999 * 120.00296 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.47506 * 59.99848 * 9 7 2 25 25 H 1.09007 * 109.46927 * 299.99772 * 9 7 2 26 26 H 0.97004 * 120.00230 * 359.97438 * 10 9 7 27 27 H 1.09002 * 109.47601 * 60.00061 * 13 11 10 28 28 H 1.08997 * 109.47598 * 299.99577 * 13 11 10 29 29 H 1.08004 * 118.46539 * 0.09964 * 18 17 15 30 30 H 1.09000 * 109.70250 * 167.20371 * 20 19 18 31 31 H 1.09001 * 109.70650 * 287.77403 * 20 19 18 32 32 H 1.09001 * 109.70315 * 56.96404 * 21 20 19 33 33 H 1.08997 * 109.70476 * 177.57054 * 21 20 19 34 34 H 1.09008 * 109.45868 * 282.64940 * 22 17 15 35 35 H 1.08999 * 109.46168 * 42.59126 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5752 0.0010 11 6 5.3249 -2.8215 0.0009 12 8 6.1130 -1.8997 0.0014 13 6 5.8272 -4.2423 0.0014 14 8 7.2563 -4.2423 0.0018 15 6 7.8687 -5.4445 0.0017 16 8 7.2062 -6.4649 0.0018 17 6 9.2825 -5.5187 0.0027 18 6 9.8638 -6.7214 0.0021 19 8 11.1961 -6.8914 0.0054 20 6 12.0191 -5.7482 -0.3531 21 6 11.5160 -4.5285 0.4310 22 6 10.0750 -4.2402 -0.0025 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6801 0.8910 25 1 3.8752 -0.6804 -0.8889 26 1 3.3695 -3.3126 0.0010 27 1 5.4638 -4.7566 -0.8884 28 1 5.4640 -4.7559 0.8916 29 1 9.2329 -7.5980 -0.0008 30 1 13.0588 -5.9483 -0.0942 31 1 11.9370 -5.5573 -1.4231 32 1 11.5431 -4.7418 1.4996 33 1 12.1452 -3.6658 0.2120 34 1 10.0755 -3.8174 -1.0072 35 1 9.6229 -3.5299 0.6897 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730851590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:51 Heat of formation + Delta-G solvation = -150.048931 kcal Electronic energy + Delta-G solvation = -19801.616466 eV Core-core repulsion = 16379.428509 eV Total energy + Delta-G solvation = -3422.187957 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.13124 -40.02845 -38.79680 -36.48620 -34.60436 -34.35457 -32.42929 -32.12368 -29.48647 -27.27566 -26.12671 -24.83382 -22.37430 -21.72412 -20.10885 -19.46728 -18.29488 -17.59471 -17.00067 -16.74620 -16.49627 -15.98438 -15.70063 -15.14512 -14.77041 -14.56042 -14.37245 -13.99755 -13.57141 -13.40103 -13.13477 -12.88817 -12.51834 -12.36347 -12.06087 -11.68882 -11.31170 -11.08373 -11.06059 -10.81399 -10.63753 -10.57389 -10.00183 -9.53947 -9.31435 -8.95798 -8.81666 -8.25562 -6.24094 -4.27078 0.87695 2.49528 2.76958 2.90601 3.06375 3.25275 3.32107 3.39931 3.97808 4.26009 4.30951 4.34827 4.48473 4.71241 4.78956 4.98790 5.05304 5.10729 5.19428 5.22892 5.25197 5.27520 5.51471 5.72119 5.79856 5.93857 6.34176 6.73848 6.75740 7.01347 7.11151 7.32279 7.71252 8.06295 8.42352 8.69166 8.81216 9.35069 10.87736 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.044119 B = 0.003197 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.500751 B = 8755.466121 C = 9337.952621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.700 5.700 11 C 0.503 3.497 12 O -0.538 6.538 13 C 0.049 3.951 14 O -0.322 6.322 15 C 0.521 3.479 16 O -0.530 6.530 17 C -0.295 4.295 18 C 0.171 3.829 19 O -0.305 6.305 20 C 0.050 3.950 21 C -0.159 4.159 22 C -0.070 4.070 23 H 0.268 0.732 24 H 0.028 0.972 25 H 0.023 0.977 26 H 0.399 0.601 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.183 0.817 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.665 -12.395 -0.372 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.350 5.350 11 C 0.286 3.714 12 O -0.415 6.415 13 C -0.029 4.029 14 O -0.237 6.237 15 C 0.370 3.630 16 O -0.424 6.424 17 C -0.298 4.298 18 C 0.104 3.896 19 O -0.216 6.216 20 C -0.024 4.024 21 C -0.196 4.196 22 C -0.107 4.107 23 H 0.078 0.922 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.233 0.767 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.200 0.800 30 H 0.129 0.871 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 22.968 -12.012 -0.327 25.921 hybrid contribution -0.352 0.698 -0.080 0.785 sum 22.616 -11.314 -0.407 25.292 Atomic orbital electron populations 1.69874 1.06218 1.27500 1.49220 1.24789 0.94802 0.99187 0.93808 0.86814 0.80576 0.83198 0.79090 1.19798 1.20846 1.18469 1.21074 0.88359 0.95341 1.53576 0.90121 1.19545 0.95342 0.78035 0.97024 1.46066 1.04927 1.11492 1.72549 1.19958 0.83653 0.89486 0.78292 1.90688 1.55365 1.45709 1.49782 1.22396 0.78782 0.97097 1.04613 1.86232 1.21355 1.32252 1.83887 1.19376 0.89126 0.81385 0.73067 1.90877 1.67341 1.35698 1.48442 1.19320 0.91795 0.96838 1.21832 1.23021 0.83337 0.97771 0.85515 1.86285 1.15092 1.39146 1.81040 1.23660 0.94289 0.84531 0.99886 1.22250 0.97516 0.98589 1.01277 1.20229 0.92924 0.94102 1.03405 0.92190 0.95453 0.95920 0.76700 0.88669 0.88661 0.80025 0.87102 0.90456 0.90238 0.89165 0.90334 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.55 -14.85 9.83 -34.44 -0.34 -15.19 16 8 H 0.08 2.28 7.84 -52.48 -0.41 1.87 16 9 C 0.22 5.42 4.50 -5.19 -0.02 5.40 16 10 N -0.70 -14.07 5.55 -61.47 -0.34 -14.41 16 11 C 0.50 9.74 7.91 -10.99 -0.09 9.66 16 12 O -0.54 -12.48 16.50 -14.35 -0.24 -12.72 16 13 C 0.05 0.75 5.86 36.00 0.21 0.96 16 14 O -0.32 -5.10 8.86 -47.86 -0.42 -5.52 16 15 C 0.52 7.30 7.64 32.00 0.24 7.54 16 16 O -0.53 -8.12 15.69 -19.39 -0.30 -8.43 16 17 C -0.29 -3.25 5.69 -105.12 -0.60 -3.85 16 18 C 0.17 1.57 10.47 29.10 0.30 1.87 16 19 O -0.31 -2.47 10.47 -14.77 -0.15 -2.62 16 20 C 0.05 0.28 7.15 37.41 0.27 0.55 16 21 C -0.16 -1.03 6.23 -26.37 -0.16 -1.19 16 22 C -0.07 -0.67 5.51 -27.91 -0.15 -0.82 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 24 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 25 H 0.02 0.58 7.57 -51.92 -0.39 0.18 16 26 H 0.40 6.95 8.32 -40.82 -0.34 6.61 16 27 H 0.10 1.28 8.13 -51.93 -0.42 0.85 16 28 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 29 H 0.18 1.52 7.21 -52.48 -0.38 1.14 16 30 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.09 1.03 7.89 -51.93 -0.41 0.62 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -33.88 306.81 -5.60 -39.48 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.43 Total: 1.53 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.44 Total: 7.02 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.43 Total: -39.96 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -1.12 Total: -29.29 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.88 -5.60 -39.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730851590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.570 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds