Wall clock time and date at job start Mon Mar 30 2020 05:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48500 * 109.46927 * 269.99913 * 3 2 1 5 5 H 1.48499 * 109.47224 * 29.99839 * 3 2 1 6 6 H 1.48500 * 109.47239 * 150.00007 * 3 2 1 7 7 C 1.37874 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00368 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99942 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99888 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99788 * 179.97438 * 11 10 9 14 14 O 1.42909 * 109.46868 * 180.02562 * 13 11 10 15 15 C 1.34923 * 116.99628 * 180.02562 * 14 13 11 16 16 O 1.21663 * 120.00761 * 359.97438 * 15 14 13 17 17 C 1.41574 * 119.99732 * 180.02562 * 15 14 13 18 18 C 1.33584 * 118.79437 * 180.02562 * 17 15 14 19 19 O 1.34307 * 123.06386 * 180.13031 * 18 17 15 20 20 C 1.45353 * 117.48473 * 343.65289 * 19 18 17 21 21 C 1.53479 * 108.26764 * 47.50636 * 20 19 18 22 22 C 1.50412 * 118.79293 * 359.72568 * 17 15 14 23 23 H 0.96999 * 120.00296 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.47506 * 59.99848 * 9 7 2 25 25 H 1.09007 * 109.46927 * 299.99772 * 9 7 2 26 26 H 0.97004 * 120.00230 * 359.97438 * 10 9 7 27 27 H 1.09002 * 109.47601 * 60.00061 * 13 11 10 28 28 H 1.08997 * 109.47598 * 299.99577 * 13 11 10 29 29 H 1.08004 * 118.46539 * 0.09964 * 18 17 15 30 30 H 1.09000 * 109.70250 * 167.20371 * 20 19 18 31 31 H 1.09001 * 109.70650 * 287.77403 * 20 19 18 32 32 H 1.09001 * 109.70315 * 56.96404 * 21 20 19 33 33 H 1.08997 * 109.70476 * 177.57054 * 21 20 19 34 34 H 1.09008 * 109.45868 * 282.64940 * 22 17 15 35 35 H 1.08999 * 109.46168 * 42.59126 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5752 0.0010 11 6 5.3249 -2.8215 0.0009 12 8 6.1130 -1.8997 0.0014 13 6 5.8272 -4.2423 0.0014 14 8 7.2563 -4.2423 0.0018 15 6 7.8687 -5.4445 0.0017 16 8 7.2062 -6.4649 0.0018 17 6 9.2825 -5.5187 0.0027 18 6 9.8638 -6.7214 0.0021 19 8 11.1961 -6.8914 0.0054 20 6 12.0191 -5.7482 -0.3531 21 6 11.5160 -4.5285 0.4310 22 6 10.0750 -4.2402 -0.0025 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6801 0.8910 25 1 3.8752 -0.6804 -0.8889 26 1 3.3695 -3.3126 0.0010 27 1 5.4638 -4.7566 -0.8884 28 1 5.4640 -4.7559 0.8916 29 1 9.2329 -7.5980 -0.0008 30 1 13.0588 -5.9483 -0.0942 31 1 11.9370 -5.5573 -1.4231 32 1 11.5431 -4.7418 1.4996 33 1 12.1452 -3.6658 0.2120 34 1 10.0755 -3.8174 -1.0072 35 1 9.6229 -3.5299 0.6897 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730851590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:50 Heat of formation + Delta-G solvation = -173.893767 kcal Electronic energy + Delta-G solvation = -19802.650456 eV Core-core repulsion = 16379.428509 eV Total energy + Delta-G solvation = -3423.221947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.10099 -40.97613 -40.26387 -37.66477 -36.21008 -35.31018 -34.47019 -32.80203 -31.09572 -28.92887 -26.76770 -25.73467 -24.09356 -22.77465 -21.74684 -20.30743 -19.41904 -18.92973 -18.37925 -17.92284 -17.65407 -17.16051 -16.85722 -16.50581 -16.20483 -15.99248 -15.29589 -15.08524 -14.74742 -14.65224 -14.35138 -14.17079 -13.92676 -13.74739 -13.53425 -13.09233 -12.71415 -12.40344 -11.93935 -11.86057 -11.81287 -11.72587 -11.68239 -11.53356 -10.96303 -10.93029 -10.05261 -9.72260 -8.40694 -6.48486 0.02847 1.32699 1.33978 1.39509 1.47587 1.50337 1.86194 2.17758 2.27866 2.61655 2.94579 3.64312 3.66372 3.71757 3.89797 4.01852 4.05400 4.09884 4.21190 4.31667 4.56789 4.71283 4.73704 4.90562 4.99318 5.08866 5.17019 5.20853 5.21726 5.28261 5.39373 6.04950 6.07481 6.50976 6.61879 6.73434 7.10595 7.26106 8.73955 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.044119 B = 0.003197 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.500751 B = 8755.466121 C = 9337.952621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.233 3.767 10 N -0.697 5.697 11 C 0.506 3.494 12 O -0.577 6.577 13 C 0.058 3.942 14 O -0.341 6.341 15 C 0.521 3.479 16 O -0.550 6.550 17 C -0.324 4.324 18 C 0.202 3.798 19 O -0.306 6.306 20 C 0.046 3.954 21 C -0.153 4.153 22 C -0.070 4.070 23 H 0.273 0.727 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.413 0.587 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.190 0.810 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.971 -13.073 -0.532 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.109 3.891 10 N -0.349 5.349 11 C 0.292 3.708 12 O -0.458 6.458 13 C -0.019 4.019 14 O -0.257 6.257 15 C 0.372 3.628 16 O -0.445 6.445 17 C -0.326 4.326 18 C 0.133 3.867 19 O -0.215 6.215 20 C -0.027 4.027 21 C -0.190 4.190 22 C -0.107 4.107 23 H 0.082 0.918 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.249 0.751 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.207 0.793 30 H 0.159 0.841 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.093 0.907 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.287 -12.724 -0.489 28.312 hybrid contribution -0.999 0.794 -0.032 1.276 sum 24.288 -11.931 -0.521 27.065 Atomic orbital electron populations 1.69976 1.07731 1.28694 1.50528 1.25603 0.95550 1.02734 0.93516 0.85849 0.79279 0.79214 0.79517 1.18907 1.19833 1.18313 1.21272 0.89791 0.94728 1.52873 0.92096 1.19173 0.93465 0.80301 0.96137 1.45868 1.05869 1.10373 1.72747 1.20576 0.82711 0.90971 0.76575 1.90665 1.56210 1.47484 1.51408 1.22286 0.79100 0.93853 1.06682 1.86226 1.21389 1.33636 1.84400 1.19790 0.90008 0.80473 0.72488 1.90858 1.67856 1.35850 1.49941 1.19337 0.90457 0.98133 1.24720 1.23131 0.83961 0.97245 0.82353 1.86302 1.14510 1.40551 1.80168 1.23985 0.95119 0.83145 1.00448 1.22237 0.95637 0.99924 1.01207 1.20201 0.94726 0.93079 1.02696 0.91784 0.96490 0.96583 0.75108 0.86453 0.86531 0.79305 0.84077 0.89382 0.90449 0.87194 0.90719 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 2 C 0.03 1.49 5.47 84.65 0.46 1.95 16 3 Si 0.94 43.70 27.47 68.60 1.88 45.59 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.26 -11.92 6.54 99.48 0.65 -11.27 16 7 C -0.55 -30.10 9.83 25.60 0.25 -29.85 16 8 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 9 C 0.23 11.32 4.50 85.63 0.38 11.70 16 10 N -0.70 -27.74 5.55 -466.79 -2.59 -30.33 16 11 C 0.51 19.36 7.91 87.66 0.69 20.05 16 12 O -0.58 -26.87 16.50 16.00 0.26 -26.60 16 13 C 0.06 1.71 5.86 71.24 0.42 2.13 16 14 O -0.34 -10.65 8.86 -51.92 -0.46 -11.11 16 15 C 0.52 14.25 7.64 68.64 0.52 14.77 16 16 O -0.55 -16.28 15.69 19.30 0.30 -15.98 16 17 C -0.32 -6.82 5.69 -20.19 -0.11 -6.94 16 18 C 0.20 3.32 10.47 66.76 0.70 4.01 16 19 O -0.31 -4.09 10.47 -75.77 -0.79 -4.88 16 20 C 0.05 0.37 7.15 72.14 0.52 0.88 16 21 C -0.15 -1.64 6.23 30.83 0.19 -1.45 16 22 C -0.07 -1.30 5.51 29.83 0.16 -1.13 16 23 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 24 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 25 H 0.02 0.81 7.57 -2.38 -0.02 0.80 16 26 H 0.41 14.12 8.32 -92.71 -0.77 13.35 16 27 H 0.12 2.94 8.13 -2.39 -0.02 2.92 16 28 H 0.12 2.94 8.13 -2.39 -0.02 2.92 16 29 H 0.19 2.80 7.21 -2.91 -0.02 2.77 16 30 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.07 1.57 7.89 -2.39 -0.02 1.56 16 Total: -1.00 -72.83 306.81 3.39 -69.45 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.29 Total: 12.86 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 4.19 Total: 16.13 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -2.29 Total: -85.46 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -0.69 Total: -58.57 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.59 kcal Total: -72.83 3.39 -69.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730851590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.446 kcal (2) G-P(sol) polarization free energy of solvation -72.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds