Wall clock time and date at job start Mon Mar 30 2020 05:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81398 * 102.99875 * 2 1 4 4 C 1.53004 * 109.47060 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47373 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47267 * 179.97438 * 5 4 3 7 7 O 1.21304 * 120.00152 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99798 * 180.27214 * 6 5 4 9 9 C 1.40595 * 119.99764 * 179.72414 * 8 6 5 10 10 C 1.40646 * 126.08311 * 359.69131 * 9 8 6 11 11 N 1.30914 * 108.38784 * 179.87895 * 10 9 8 12 12 N 1.40065 * 108.40439 * 0.38138 * 11 10 9 13 13 C 1.37327 * 126.06489 * 179.73676 * 12 11 10 14 14 H 1.08003 * 119.99416 * 174.15969 * 13 12 11 15 15 C 1.38979 * 120.00372 * 354.16004 * 13 12 11 16 16 N 1.31300 * 119.99795 * 5.93274 * 15 13 12 17 17 Si 1.86793 * 120.00339 * 185.93961 * 15 13 12 18 18 H 1.48508 * 109.47464 * 94.97550 * 17 15 13 19 19 H 1.48497 * 109.47452 * 214.97875 * 17 15 13 20 20 H 1.48508 * 109.47127 * 334.97858 * 17 15 13 21 21 C 1.35686 * 126.08204 * 180.02562 * 9 8 6 22 22 H 1.08996 * 109.47498 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47674 * 299.99889 * 1 2 3 24 24 H 1.09002 * 109.47045 * 60.00083 * 1 2 3 25 25 H 1.08998 * 109.47048 * 60.00255 * 3 2 1 26 26 H 1.08993 * 109.47169 * 299.99903 * 3 2 1 27 27 H 1.08996 * 109.47208 * 59.99573 * 4 3 2 28 28 H 1.09007 * 109.47159 * 300.00174 * 4 3 2 29 29 H 1.09004 * 109.47302 * 59.99802 * 5 4 3 30 30 H 1.08998 * 109.47099 * 300.00386 * 5 4 3 31 31 H 0.97001 * 120.00137 * 359.73317 * 8 6 5 32 32 H 1.07998 * 125.80732 * 0.02562 * 10 9 8 33 33 H 0.96997 * 119.99732 * 180.02562 * 16 15 13 34 34 H 1.07995 * 126.24184 * 359.92839 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0865 3.4307 0.0013 6 6 5.5839 3.6005 0.0026 7 8 6.3049 2.6251 0.0034 8 7 6.1219 4.8362 0.0088 9 6 7.5188 4.9946 0.0159 10 6 8.4700 3.9586 0.0233 11 7 9.6644 4.4945 0.0258 12 7 9.5238 5.8880 0.0289 13 6 10.5471 6.8038 0.0372 14 1 10.3295 7.8575 -0.0563 15 6 11.8627 6.3747 0.1658 16 7 12.1378 5.0908 0.1623 17 14 13.2396 7.6243 0.3440 18 1 13.5385 7.8298 1.7841 19 1 14.4549 7.1238 -0.3472 20 1 12.8202 8.9130 -0.2632 21 6 8.1893 6.1743 0.0231 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8031 2.2371 0.8900 26 1 1.8031 2.2371 -0.8899 27 1 4.1616 1.4702 -0.8890 28 1 4.1608 1.4704 0.8909 29 1 3.6672 3.9001 0.8913 30 1 3.6679 3.9006 -0.8886 31 1 5.5453 5.6163 0.0086 32 1 8.2520 2.9008 0.0242 33 1 13.0560 4.7913 0.2524 34 1 7.7475 7.1597 0.0234 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736074239.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:24 Heat of formation + Delta-G solvation = 33.987576 kcal Electronic energy + Delta-G solvation = -17344.676813 eV Core-core repulsion = 14405.514900 eV Total energy + Delta-G solvation = -2939.161913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.89840 -38.64170 -34.65861 -34.04973 -33.11440 -30.25387 -29.36319 -28.65318 -27.14375 -24.76217 -22.36734 -20.90823 -20.02376 -19.37068 -17.52863 -16.75298 -15.97168 -15.95044 -15.42303 -15.23502 -14.51225 -14.33980 -13.92560 -13.69671 -13.58319 -13.33635 -13.18711 -12.86557 -12.28582 -11.82830 -11.68905 -11.47300 -11.38859 -11.25815 -10.91711 -10.90929 -10.51692 -10.19978 -10.11464 -9.15841 -9.11873 -8.77562 -8.03246 -7.91317 -6.67221 -6.54373 -4.20984 1.41851 2.36491 2.86256 3.05383 3.06529 3.11376 3.63575 3.70298 3.90290 4.44608 4.64921 4.71096 4.81628 4.83142 4.87513 4.96991 5.02835 5.24083 5.32594 5.37247 5.41724 5.59674 5.98708 6.21103 6.26391 6.49472 6.93528 6.98971 7.15916 7.27334 7.88411 8.21624 8.32089 8.66311 8.90426 9.40524 9.69654 10.42013 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.083089 B = 0.002782 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.905812 B =10062.086613 C =10362.973676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.263 6.263 3 C -0.083 4.083 4 C -0.089 4.089 5 C -0.130 4.130 6 C 0.496 3.504 7 O -0.535 6.535 8 N -0.627 5.627 9 C -0.060 4.060 10 C -0.034 4.034 11 N -0.261 5.261 12 N -0.144 5.144 13 C -0.324 4.324 14 H 0.116 0.884 15 C 0.046 3.954 16 N -0.770 5.770 17 Si 0.934 3.066 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.264 1.264 21 C -0.084 4.084 22 H 0.099 0.901 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.396 0.604 32 H 0.176 0.824 33 H 0.275 0.725 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.244 -1.254 -0.039 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.037 6.037 3 C -0.232 4.232 4 C -0.127 4.127 5 C -0.172 4.172 6 C 0.282 3.718 7 O -0.413 6.413 8 N -0.269 5.269 9 C -0.166 4.166 10 C -0.209 4.209 11 N -0.092 5.092 12 N 0.088 4.912 13 C -0.456 4.456 14 H 0.133 0.867 15 C -0.171 4.171 16 N -0.396 5.396 17 Si 0.758 3.242 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.235 4.235 22 H 0.118 0.882 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.229 0.771 32 H 0.193 0.807 33 H 0.085 0.915 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.620 -3.236 -0.031 16.932 hybrid contribution -1.570 2.300 0.077 2.786 sum -18.189 -0.936 0.046 18.213 Atomic orbital electron populations 1.23369 0.94695 1.06412 1.04738 1.87148 1.06669 1.11795 1.98052 1.23445 1.00931 0.93985 1.04803 1.21038 0.91212 0.95233 1.05261 1.21561 0.93523 0.98035 1.04069 1.20351 0.90100 0.83045 0.78270 1.90610 1.62180 1.38746 1.49715 1.42557 1.05308 1.07496 1.71565 1.17302 0.81959 0.93765 1.23528 1.24121 0.89254 0.99566 1.07987 1.78246 1.18901 0.86449 1.25653 1.44546 1.02595 1.04729 1.39297 1.19862 0.84422 0.88418 1.52942 0.86655 1.25645 0.99009 0.96921 0.95539 1.70228 1.20556 1.13663 1.35194 0.85817 0.79571 0.79827 0.78947 1.19657 1.20114 1.18808 1.21268 0.85391 0.96857 1.20022 0.88194 0.90608 0.90613 0.90041 0.90036 0.90003 0.90007 0.89146 0.89150 0.77094 0.80718 0.91486 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.76 101.05 1.09 0.27 16 2 S -0.26 -2.71 22.38 -107.50 -2.41 -5.12 16 3 C -0.08 -0.73 5.94 37.16 0.22 -0.51 16 4 C -0.09 -1.01 4.51 -26.73 -0.12 -1.13 16 5 C -0.13 -1.39 5.70 -27.89 -0.16 -1.55 16 6 C 0.50 8.37 7.80 -10.99 -0.09 8.28 16 7 O -0.54 -11.42 13.13 5.54 0.07 -11.35 16 8 N -0.63 -10.92 5.47 -10.00 -0.05 -10.98 16 9 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 10 C -0.03 -0.90 10.85 -17.03 -0.18 -1.09 16 11 N -0.26 -7.73 10.42 30.80 0.32 -7.41 16 12 N -0.14 -4.00 3.74 -11.41 -0.04 -4.04 16 13 C -0.32 -8.66 10.24 -14.82 -0.15 -8.82 16 14 H 0.12 2.75 7.84 -52.48 -0.41 2.34 16 15 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 16 N -0.77 -21.78 11.84 55.49 0.66 -21.13 16 17 Si 0.93 19.08 29.55 -169.99 -5.02 14.06 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 21 C -0.08 -2.00 11.49 -16.39 -0.19 -2.19 16 22 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 25 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 28 H 0.08 1.08 8.10 -51.93 -0.42 0.65 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.40 5.16 8.83 -40.82 -0.36 4.80 16 32 H 0.18 4.66 5.92 -52.49 -0.31 4.35 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.14 2.84 8.06 -52.49 -0.42 2.41 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -34.20 309.67 -6.51 -40.70 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -4.44 Total: 8.20 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -0.26 Total: -7.61 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.88 Total: -43.55 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.07 Total: -11.35 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.41 Total: -5.12 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.20 -6.51 -40.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736074239.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.691 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds