Wall clock time and date at job start Mon Mar 30 2020 05:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81398 * 102.99875 * 2 1 4 4 C 1.53004 * 109.47060 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47373 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47267 * 179.97438 * 5 4 3 7 7 O 1.21304 * 120.00152 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99798 * 180.27214 * 6 5 4 9 9 C 1.40595 * 119.99764 * 179.72414 * 8 6 5 10 10 C 1.40646 * 126.08311 * 359.69131 * 9 8 6 11 11 N 1.30914 * 108.38784 * 179.87895 * 10 9 8 12 12 N 1.40065 * 108.40439 * 0.38138 * 11 10 9 13 13 C 1.37327 * 126.06489 * 179.73676 * 12 11 10 14 14 H 1.08003 * 119.99416 * 174.15969 * 13 12 11 15 15 C 1.38979 * 120.00372 * 354.16004 * 13 12 11 16 16 N 1.31300 * 119.99795 * 5.93274 * 15 13 12 17 17 Si 1.86793 * 120.00339 * 185.93961 * 15 13 12 18 18 H 1.48508 * 109.47464 * 94.97550 * 17 15 13 19 19 H 1.48497 * 109.47452 * 214.97875 * 17 15 13 20 20 H 1.48508 * 109.47127 * 334.97858 * 17 15 13 21 21 C 1.35686 * 126.08204 * 180.02562 * 9 8 6 22 22 H 1.08996 * 109.47498 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47674 * 299.99889 * 1 2 3 24 24 H 1.09002 * 109.47045 * 60.00083 * 1 2 3 25 25 H 1.08998 * 109.47048 * 60.00255 * 3 2 1 26 26 H 1.08993 * 109.47169 * 299.99903 * 3 2 1 27 27 H 1.08996 * 109.47208 * 59.99573 * 4 3 2 28 28 H 1.09007 * 109.47159 * 300.00174 * 4 3 2 29 29 H 1.09004 * 109.47302 * 59.99802 * 5 4 3 30 30 H 1.08998 * 109.47099 * 300.00386 * 5 4 3 31 31 H 0.97001 * 120.00137 * 359.73317 * 8 6 5 32 32 H 1.07998 * 125.80732 * 0.02562 * 10 9 8 33 33 H 0.96997 * 119.99732 * 180.02562 * 16 15 13 34 34 H 1.07995 * 126.24184 * 359.92839 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0865 3.4307 0.0013 6 6 5.5839 3.6005 0.0026 7 8 6.3049 2.6251 0.0034 8 7 6.1219 4.8362 0.0088 9 6 7.5188 4.9946 0.0159 10 6 8.4700 3.9586 0.0233 11 7 9.6644 4.4945 0.0258 12 7 9.5238 5.8880 0.0289 13 6 10.5471 6.8038 0.0372 14 1 10.3295 7.8575 -0.0563 15 6 11.8627 6.3747 0.1658 16 7 12.1378 5.0908 0.1623 17 14 13.2396 7.6243 0.3440 18 1 13.5385 7.8298 1.7841 19 1 14.4549 7.1238 -0.3472 20 1 12.8202 8.9130 -0.2632 21 6 8.1893 6.1743 0.0231 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8031 2.2371 0.8900 26 1 1.8031 2.2371 -0.8899 27 1 4.1616 1.4702 -0.8890 28 1 4.1608 1.4704 0.8909 29 1 3.6672 3.9001 0.8913 30 1 3.6679 3.9006 -0.8886 31 1 5.5453 5.6163 0.0086 32 1 8.2520 2.9008 0.0242 33 1 13.0560 4.7913 0.2524 34 1 7.7475 7.1597 0.0234 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736074239.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:24 Heat of formation + Delta-G solvation = 10.256058 kcal Electronic energy + Delta-G solvation = -17345.705889 eV Core-core repulsion = 14405.514900 eV Total energy + Delta-G solvation = -2940.190989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.68079 -40.24257 -36.01477 -35.36529 -34.92588 -32.24530 -30.25785 -29.74204 -28.53797 -26.63775 -23.50411 -22.73789 -21.45988 -21.12825 -19.31518 -18.00555 -17.40534 -16.94181 -16.93954 -16.84723 -15.76210 -15.71650 -15.07656 -15.04923 -14.79967 -14.55235 -14.23575 -14.17025 -13.49318 -13.28589 -13.18365 -12.93145 -12.80091 -12.69720 -12.28211 -12.06131 -11.80149 -11.79394 -11.00345 -10.89780 -10.81465 -10.59311 -10.09289 -8.69436 -8.50252 -8.46742 -6.23789 0.75662 1.24183 1.39913 1.56988 1.58452 1.74130 1.89457 2.08357 2.38454 2.55457 2.95274 3.08645 3.79408 3.96661 3.99859 4.36455 4.37958 4.43023 4.48990 4.50027 4.62610 4.64032 4.74587 4.91724 5.01749 5.09823 5.12421 5.29238 5.31675 5.54011 5.97369 6.34030 6.75077 6.83536 7.45836 7.51734 7.70459 8.52926 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.083089 B = 0.002782 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.905812 B =10062.086613 C =10362.973676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 S -0.344 6.344 3 C -0.063 4.063 4 C -0.086 4.086 5 C -0.112 4.112 6 C 0.490 3.510 7 O -0.586 6.586 8 N -0.618 5.618 9 C -0.044 4.044 10 C -0.064 4.064 11 N -0.313 5.313 12 N -0.170 5.170 13 C -0.354 4.354 14 H 0.142 0.858 15 C -0.009 4.009 16 N -0.827 5.827 17 Si 1.020 2.980 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.241 1.241 21 C -0.081 4.081 22 H 0.106 0.894 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.422 0.578 32 H 0.165 0.835 33 H 0.276 0.724 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.937 1.579 0.004 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 S -0.119 6.119 3 C -0.211 4.211 4 C -0.125 4.125 5 C -0.153 4.153 6 C 0.279 3.721 7 O -0.466 6.466 8 N -0.264 5.264 9 C -0.150 4.150 10 C -0.239 4.239 11 N -0.146 5.146 12 N 0.060 4.940 13 C -0.485 4.485 14 H 0.159 0.841 15 C -0.220 4.220 16 N -0.455 5.455 17 Si 0.839 3.161 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.164 1.164 21 C -0.231 4.231 22 H 0.124 0.876 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.259 0.741 32 H 0.181 0.819 33 H 0.085 0.915 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -19.392 -0.373 0.008 19.395 hybrid contribution -0.918 1.334 0.053 1.620 sum -20.310 0.961 0.061 20.333 Atomic orbital electron populations 1.23389 0.90464 1.07324 1.06062 1.87481 1.11446 1.14647 1.98276 1.23331 0.98570 0.92270 1.06886 1.20942 0.93251 0.95500 1.02826 1.21575 0.88259 0.97873 1.07586 1.21606 0.92648 0.81854 0.75953 1.90606 1.64102 1.40451 1.51430 1.42551 1.03044 1.09178 1.71618 1.17397 0.84490 0.92382 1.20736 1.24159 0.90170 0.99981 1.09616 1.78137 1.20636 0.88301 1.27483 1.44853 1.04304 1.04157 1.40639 1.20623 0.84987 0.89477 1.53454 0.84093 1.26919 1.01829 0.99015 0.94242 1.70416 1.21226 1.16506 1.37337 0.84563 0.75164 0.77397 0.78967 1.19188 1.20240 1.16399 1.22045 0.84211 0.98845 1.18018 0.87565 0.89230 0.89228 0.87855 0.87834 0.92601 0.92629 0.85400 0.85377 0.74057 0.81857 0.91455 0.79312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.76 113.37 1.22 0.10 16 2 S -0.34 -6.81 22.38 -56.49 -1.26 -8.08 16 3 C -0.06 -0.93 5.94 71.98 0.43 -0.50 16 4 C -0.09 -1.85 4.51 30.59 0.14 -1.72 16 5 C -0.11 -2.00 5.70 29.85 0.17 -1.83 16 6 C 0.49 15.88 7.80 87.66 0.68 16.56 16 7 O -0.59 -25.72 13.13 -3.10 -0.04 -25.76 16 8 N -0.62 -20.20 5.47 -303.92 -1.66 -21.86 16 9 C -0.04 -2.01 6.90 37.73 0.26 -1.75 16 10 C -0.06 -3.58 10.85 85.42 0.93 -2.66 16 11 N -0.31 -19.36 10.42 -56.47 -0.59 -19.95 16 12 N -0.17 -9.58 3.74 -190.02 -0.71 -10.29 16 13 C -0.35 -18.95 10.24 84.01 0.86 -18.09 16 14 H 0.14 6.49 7.84 -2.91 -0.02 6.47 16 15 C -0.01 -0.46 5.50 84.95 0.47 0.01 16 16 N -0.83 -48.68 11.84 21.66 0.26 -48.42 16 17 Si 1.02 39.00 29.55 68.60 2.03 41.03 16 18 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 19 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 20 H -0.24 -8.23 7.11 99.48 0.71 -7.52 16 21 C -0.08 -3.74 11.49 83.38 0.96 -2.79 16 22 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 28 H 0.05 1.48 8.10 -2.38 -0.02 1.46 16 29 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.42 9.30 8.83 -92.71 -0.82 8.48 16 32 H 0.16 9.34 5.92 -2.91 -0.02 9.32 16 33 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.19 6.75 8.06 -2.91 -0.02 6.73 16 Total: -1.00 -81.41 309.67 4.42 -76.98 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.29 Total: 29.01 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 6.11 Total: -12.66 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -2.70 Total: -100.53 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.04 Total: -25.76 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Atomic # 16 Polarization: -6.81 SS G_CDS: -1.26 Total: -8.08 kcal Total: -81.41 4.42 -76.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736074239.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.237 kcal (2) G-P(sol) polarization free energy of solvation -81.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds