Wall clock time and date at job start Mon Mar 30 2020 04:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46930 * 2 1 4 4 O 1.42908 * 109.47155 * 119.99859 * 2 1 3 5 5 C 1.50700 * 109.47492 * 239.99471 * 2 1 3 6 6 N 1.29126 * 124.78489 * 285.02696 * 5 2 1 7 7 C 1.31388 * 117.33320 * 179.72918 * 6 5 2 8 8 C 1.35473 * 114.13343 * 0.02562 * 7 6 5 9 9 C 1.46859 * 126.12222 * 179.97438 * 8 7 6 10 10 N 1.29945 * 120.00012 * 359.97438 * 9 8 7 11 11 N 1.40098 * 119.99740 * 179.97438 * 10 9 8 12 12 C 1.46502 * 119.99565 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47693 * 30.00253 * 12 11 10 14 14 C 1.52998 * 109.47286 * 269.99774 * 12 11 10 15 15 C 1.50708 * 109.46989 * 150.00210 * 12 11 10 16 16 H 1.07996 * 120.00033 * 5.45853 * 15 12 11 17 17 C 1.37875 * 119.99874 * 185.45846 * 15 12 11 18 18 N 1.31519 * 120.00099 * 9.56035 * 17 15 12 19 19 Si 1.86801 * 119.99936 * 189.55401 * 17 15 12 20 20 H 1.48502 * 109.46750 * 84.99704 * 19 17 15 21 21 H 1.48500 * 109.47274 * 204.99469 * 19 17 15 22 22 H 1.48494 * 109.47133 * 324.99867 * 19 17 15 23 23 S 1.70945 * 124.77794 * 104.71982 * 5 2 1 24 24 H 1.09001 * 109.46930 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47365 * 300.00236 * 1 2 3 26 26 H 1.08994 * 109.46949 * 60.00803 * 1 2 3 27 27 H 0.96695 * 113.99845 * 59.99679 * 4 2 1 28 28 H 1.07995 * 122.93516 * 180.02562 * 7 6 5 29 29 H 1.08001 * 120.00160 * 179.97438 * 9 8 7 30 30 H 0.97002 * 120.00234 * 0.02562 * 11 10 9 31 31 H 1.09007 * 109.46903 * 63.62366 * 14 12 11 32 32 H 1.08997 * 109.47302 * 183.62066 * 14 12 11 33 33 H 1.09000 * 109.47654 * 303.62821 * 14 12 11 34 34 H 0.97000 * 120.00016 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.0325 -0.7105 -1.2304 6 7 2.0188 -1.9906 -1.3990 7 6 2.4898 -2.4546 -2.5344 8 6 2.9326 -1.4962 -3.3833 9 6 3.5083 -1.7188 -4.7159 10 7 3.6300 -2.9274 -5.1775 11 7 4.1787 -3.1397 -6.4489 12 6 4.3154 -4.5023 -6.9695 13 1 3.5260 -5.1301 -6.5564 14 6 5.6792 -5.0674 -6.5676 15 6 4.2043 -4.4794 -8.4723 16 1 4.1361 -3.5365 -8.9944 17 6 4.1897 -5.6622 -9.1806 18 7 4.0830 -6.8084 -8.5444 19 14 4.3214 -5.6369 -11.0437 20 1 5.7521 -5.5836 -11.4381 21 1 3.6998 -6.8653 -11.6007 22 1 3.6170 -4.4418 -11.5735 23 16 2.6939 0.0653 -2.6026 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.7210 -1.5952 1.2330 28 1 2.5212 -3.5080 -2.7704 29 1 3.8305 -0.8781 -5.3123 30 1 4.4681 -2.3845 -6.9846 31 1 5.7351 -5.1440 -5.4817 32 1 5.8073 -6.0559 -7.0086 33 1 6.4671 -4.4048 -6.9260 34 1 4.0731 -7.6406 -9.0426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773068755.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:43 Heat of formation + Delta-G solvation = 26.259815 kcal Electronic energy + Delta-G solvation = -17169.835461 eV Core-core repulsion = 14230.338447 eV Total energy + Delta-G solvation = -2939.497014 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.78701 -37.40588 -36.55114 -34.22800 -32.14942 -31.33554 -29.58499 -27.17786 -25.72121 -25.20786 -23.23763 -21.74365 -20.50705 -19.16080 -18.36695 -17.28655 -16.43158 -15.65586 -15.37150 -15.24652 -14.77807 -14.58202 -14.25134 -13.78687 -13.19682 -12.90331 -12.62893 -12.53487 -12.25531 -11.74011 -11.61582 -11.42670 -11.07703 -11.04288 -10.82721 -10.72299 -10.46215 -10.26628 -9.90384 -9.49515 -9.38207 -9.16376 -8.85240 -8.55467 -6.98326 -6.24026 -4.29641 0.50699 1.25229 1.73057 2.54488 3.19921 3.26457 3.27757 3.30751 3.65297 3.92081 4.27586 4.30218 4.68584 4.79093 5.05721 5.10034 5.12888 5.44024 5.56393 5.59281 5.83504 5.95386 6.35139 6.47986 6.69734 6.82248 6.96429 7.33969 7.42414 7.61128 7.65549 7.77654 8.01531 8.10204 8.75979 9.08882 9.35969 10.84136 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.047135 B = 0.003064 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.896267 B = 9137.211682 C = 9275.279511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.191 3.809 3 H 0.114 0.886 4 O -0.550 6.550 5 C -0.020 4.020 6 N -0.455 5.455 7 C 0.039 3.961 8 C -0.127 4.127 9 C 0.006 3.994 10 N -0.175 5.175 11 N -0.609 5.609 12 C 0.293 3.707 13 H 0.052 0.948 14 C -0.145 4.145 15 C -0.537 4.537 16 H 0.061 0.939 17 C 0.070 3.930 18 N -0.882 5.882 19 Si 0.901 3.099 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.274 1.274 23 S 0.141 5.859 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.386 0.614 28 H 0.183 0.817 29 H 0.109 0.891 30 H 0.371 0.629 31 H 0.018 0.982 32 H 0.074 0.926 33 H 0.029 0.971 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 13.484 13.189 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.129 3.871 3 H 0.132 0.868 4 O -0.356 6.356 5 C -0.298 4.298 6 N -0.170 5.170 7 C -0.116 4.116 8 C -0.250 4.250 9 C -0.202 4.202 10 N 0.009 4.991 11 N -0.346 5.346 12 C 0.191 3.809 13 H 0.069 0.931 14 C -0.204 4.204 15 C -0.576 4.576 16 H 0.079 0.921 17 C -0.134 4.134 18 N -0.519 5.519 19 Si 0.728 3.272 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.199 1.199 23 S 0.394 5.606 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.235 0.765 28 H 0.200 0.800 29 H 0.126 0.874 30 H 0.208 0.792 31 H 0.037 0.963 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.254 13.400 13.539 19.518 hybrid contribution 0.251 -0.490 -2.105 2.176 sum -4.002 12.910 11.434 17.704 Atomic orbital electron populations 1.22481 0.94395 1.03738 1.03100 1.20332 0.93342 0.94566 0.78899 0.86843 1.86528 1.77451 1.30191 1.41403 1.27782 1.06448 0.93517 1.02075 1.65880 1.17110 1.11831 1.22178 1.22086 1.00209 1.01579 0.87758 1.23884 1.07266 0.94699 0.99157 1.22191 1.10130 0.93700 0.94222 1.74014 1.03044 1.21779 1.00242 1.49199 1.65231 1.10256 1.09890 1.18654 0.93915 0.75788 0.92550 0.93058 1.22145 0.98895 1.02122 0.97284 1.21148 1.52899 0.93140 0.90416 0.92107 1.24860 0.94387 0.95138 0.98980 1.69964 1.48108 0.97703 1.36102 0.86474 0.78437 0.77648 0.84656 1.20327 1.21033 1.19892 1.83625 1.57248 1.09157 1.10569 0.91311 0.90839 0.91229 0.76467 0.79978 0.87379 0.79232 0.96264 0.90677 0.95172 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.52 37.16 0.35 -1.00 16 2 C 0.19 1.78 4.09 -27.88 -0.11 1.67 16 3 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 4 O -0.55 -5.73 13.32 -35.23 -0.47 -6.20 16 5 C -0.02 -0.24 6.27 -13.42 -0.08 -0.33 16 6 N -0.46 -6.43 10.34 -11.51 -0.12 -6.55 16 7 C 0.04 0.59 11.07 -18.73 -0.21 0.39 16 8 C -0.13 -1.89 6.50 -37.08 -0.24 -2.14 16 9 C 0.01 0.10 11.04 -14.86 -0.16 -0.07 16 10 N -0.17 -3.45 11.20 32.04 0.36 -3.09 16 11 N -0.61 -12.96 6.10 -5.88 -0.04 -13.00 16 12 C 0.29 7.23 3.10 -69.08 -0.21 7.01 16 13 H 0.05 1.42 8.09 -51.93 -0.42 1.00 16 14 C -0.15 -3.41 9.39 37.16 0.35 -3.06 16 15 C -0.54 -14.06 8.67 -34.44 -0.30 -14.36 16 16 H 0.06 1.55 7.78 -52.49 -0.41 1.14 16 17 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 18 N -0.88 -24.33 12.16 55.43 0.67 -23.65 16 19 Si 0.90 20.36 29.55 -169.99 -5.02 15.34 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 S 0.14 1.62 23.16 -107.50 -2.49 -0.87 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.39 3.36 8.89 45.56 0.41 3.76 16 28 H 0.18 2.88 8.04 -52.49 -0.42 2.45 16 29 H 0.11 1.57 8.03 -52.49 -0.42 1.15 16 30 H 0.37 7.22 8.57 -182.60 -1.56 5.66 16 31 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 32 H 0.07 1.89 6.83 -51.93 -0.35 1.54 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -28.74 315.34 -7.92 -36.66 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.86 Total: 6.72 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.71 Total: -10.11 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.88 Total: -46.29 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.47 Total: -6.20 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.49 Total: -0.87 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.74 -7.92 -36.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773068755.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.916 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds