Wall clock time and date at job start Mon Mar 30 2020 04:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46930 * 2 1 4 4 O 1.42908 * 109.47155 * 119.99859 * 2 1 3 5 5 C 1.50700 * 109.47492 * 239.99471 * 2 1 3 6 6 N 1.29126 * 124.78489 * 285.02696 * 5 2 1 7 7 C 1.31388 * 117.33320 * 179.72918 * 6 5 2 8 8 C 1.35473 * 114.13343 * 0.02562 * 7 6 5 9 9 C 1.46859 * 126.12222 * 179.97438 * 8 7 6 10 10 N 1.29945 * 120.00012 * 359.97438 * 9 8 7 11 11 N 1.40098 * 119.99740 * 179.97438 * 10 9 8 12 12 C 1.46502 * 119.99565 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47693 * 30.00253 * 12 11 10 14 14 C 1.52998 * 109.47286 * 269.99774 * 12 11 10 15 15 C 1.50708 * 109.46989 * 150.00210 * 12 11 10 16 16 H 1.07996 * 120.00033 * 5.45853 * 15 12 11 17 17 C 1.37875 * 119.99874 * 185.45846 * 15 12 11 18 18 N 1.31519 * 120.00099 * 9.56035 * 17 15 12 19 19 Si 1.86801 * 119.99936 * 189.55401 * 17 15 12 20 20 H 1.48502 * 109.46750 * 84.99704 * 19 17 15 21 21 H 1.48500 * 109.47274 * 204.99469 * 19 17 15 22 22 H 1.48494 * 109.47133 * 324.99867 * 19 17 15 23 23 S 1.70945 * 124.77794 * 104.71982 * 5 2 1 24 24 H 1.09001 * 109.46930 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47365 * 300.00236 * 1 2 3 26 26 H 1.08994 * 109.46949 * 60.00803 * 1 2 3 27 27 H 0.96695 * 113.99845 * 59.99679 * 4 2 1 28 28 H 1.07995 * 122.93516 * 180.02562 * 7 6 5 29 29 H 1.08001 * 120.00160 * 179.97438 * 9 8 7 30 30 H 0.97002 * 120.00234 * 0.02562 * 11 10 9 31 31 H 1.09007 * 109.46903 * 63.62366 * 14 12 11 32 32 H 1.08997 * 109.47302 * 183.62066 * 14 12 11 33 33 H 1.09000 * 109.47654 * 303.62821 * 14 12 11 34 34 H 0.97000 * 120.00016 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.0325 -0.7105 -1.2304 6 7 2.0188 -1.9906 -1.3990 7 6 2.4898 -2.4546 -2.5344 8 6 2.9326 -1.4962 -3.3833 9 6 3.5083 -1.7188 -4.7159 10 7 3.6300 -2.9274 -5.1775 11 7 4.1787 -3.1397 -6.4489 12 6 4.3154 -4.5023 -6.9695 13 1 3.5260 -5.1301 -6.5564 14 6 5.6792 -5.0674 -6.5676 15 6 4.2043 -4.4794 -8.4723 16 1 4.1361 -3.5365 -8.9944 17 6 4.1897 -5.6622 -9.1806 18 7 4.0830 -6.8084 -8.5444 19 14 4.3214 -5.6369 -11.0437 20 1 5.7521 -5.5836 -11.4381 21 1 3.6998 -6.8653 -11.6007 22 1 3.6170 -4.4418 -11.5735 23 16 2.6939 0.0653 -2.6026 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.7210 -1.5952 1.2330 28 1 2.5212 -3.5080 -2.7704 29 1 3.8305 -0.8781 -5.3123 30 1 4.4681 -2.3845 -6.9846 31 1 5.7351 -5.1440 -5.4817 32 1 5.8073 -6.0559 -7.0086 33 1 6.4671 -4.4048 -6.9260 34 1 4.0731 -7.6406 -9.0426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773068755.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:43 Heat of formation + Delta-G solvation = 5.003779 kcal Electronic energy + Delta-G solvation = -17170.757192 eV Core-core repulsion = 14230.338447 eV Total energy + Delta-G solvation = -2940.418745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85129 -38.42131 -37.91647 -35.95811 -33.69042 -32.43999 -30.91260 -28.55379 -27.30875 -26.72458 -24.26025 -22.97945 -22.24429 -20.32203 -19.43201 -18.78295 -17.83760 -17.05782 -16.81504 -16.18369 -16.12582 -15.67236 -15.37928 -15.08457 -14.61119 -14.44278 -14.21325 -13.66380 -13.40515 -12.93347 -12.86709 -12.80360 -12.65480 -12.54809 -12.34801 -12.24155 -12.08232 -11.59907 -11.27527 -11.10021 -10.61680 -10.54876 -10.46694 -9.91637 -8.52930 -8.22215 -6.36514 -0.60236 0.20981 0.67003 1.33270 1.42358 1.43552 1.52835 2.07372 2.12822 2.44685 3.00392 3.08200 3.54688 3.80431 3.90267 4.10685 4.25285 4.30965 4.67364 4.69973 4.83276 4.91813 4.94390 5.03353 5.09840 5.17436 5.29973 5.48506 5.68193 5.72220 6.10689 6.32732 6.60616 6.71954 6.80485 7.33611 7.63724 8.84796 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.047135 B = 0.003064 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.896267 B = 9137.211682 C = 9275.279511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.187 3.813 3 H 0.138 0.862 4 O -0.561 6.561 5 C -0.013 4.013 6 N -0.480 5.480 7 C 0.041 3.959 8 C -0.174 4.174 9 C 0.048 3.952 10 N -0.226 5.226 11 N -0.629 5.629 12 C 0.304 3.696 13 H 0.007 0.993 14 C -0.132 4.132 15 C -0.551 4.551 16 H 0.064 0.936 17 C 0.022 3.978 18 N -0.915 5.915 19 Si 0.967 3.033 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.268 1.268 23 S 0.221 5.779 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.392 0.608 28 H 0.167 0.833 29 H 0.132 0.868 30 H 0.378 0.622 31 H 0.022 0.978 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.690 16.325 13.824 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.125 3.875 3 H 0.155 0.845 4 O -0.368 6.368 5 C -0.290 4.290 6 N -0.195 5.195 7 C -0.115 4.115 8 C -0.297 4.297 9 C -0.163 4.163 10 N -0.038 5.038 11 N -0.366 5.366 12 C 0.201 3.799 13 H 0.025 0.975 14 C -0.191 4.191 15 C -0.590 4.590 16 H 0.082 0.918 17 C -0.179 4.179 18 N -0.553 5.553 19 Si 0.792 3.208 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.192 1.192 23 S 0.476 5.524 24 H 0.076 0.924 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.242 0.758 28 H 0.184 0.816 29 H 0.149 0.851 30 H 0.215 0.785 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.568 16.269 14.182 22.061 hybrid contribution 0.224 -1.139 -1.984 2.298 sum -4.345 15.131 12.198 19.915 Atomic orbital electron populations 1.22456 0.92892 1.03471 1.04433 1.20711 0.94496 0.95027 0.77309 0.84451 1.86515 1.77790 1.30807 1.41653 1.28560 1.04051 0.93287 1.03144 1.65934 1.18544 1.13096 1.21916 1.22048 0.99704 1.01386 0.88407 1.24009 1.09359 0.97291 0.99036 1.22685 1.05809 0.93532 0.94242 1.74036 1.06062 1.23637 1.00096 1.48587 1.68072 1.08855 1.11100 1.18188 0.92693 0.77177 0.91883 0.97483 1.21966 0.98891 1.00947 0.97300 1.21476 1.52648 0.93384 0.91452 0.91783 1.25707 0.93956 0.94738 1.03532 1.70091 1.49062 0.98292 1.37845 0.85432 0.78656 0.77636 0.79076 1.19512 1.20939 1.19236 1.83330 1.55115 1.05586 1.08401 0.92408 0.89040 0.90389 0.75830 0.81609 0.85079 0.78476 0.95853 0.92918 0.94126 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 9.52 71.98 0.69 -1.41 16 2 C 0.19 2.87 4.09 29.85 0.12 2.99 16 3 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 4 O -0.56 -10.31 13.32 -148.98 -1.99 -12.29 16 5 C -0.01 -0.27 6.27 88.51 0.55 0.28 16 6 N -0.48 -12.98 10.34 -190.33 -1.97 -14.95 16 7 C 0.04 1.25 11.07 84.12 0.93 2.18 16 8 C -0.17 -4.94 6.50 23.89 0.16 -4.79 16 9 C 0.05 1.53 11.04 87.23 0.96 2.49 16 10 N -0.23 -9.11 11.20 -52.54 -0.59 -9.70 16 11 N -0.63 -27.42 6.10 -172.51 -1.05 -28.47 16 12 C 0.30 15.63 3.10 44.25 0.14 15.77 16 13 H 0.01 0.43 8.09 -2.39 -0.02 0.41 16 14 C -0.13 -6.40 9.39 71.98 0.68 -5.72 16 15 C -0.55 -29.45 8.67 25.60 0.22 -29.23 16 16 H 0.06 3.29 7.78 -2.91 -0.02 3.27 16 17 C 0.02 1.16 5.17 84.65 0.44 1.59 16 18 N -0.92 -51.99 12.16 21.45 0.26 -51.73 16 19 Si 0.97 41.99 29.55 68.60 2.03 44.02 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 S 0.22 4.35 23.16 -56.49 -1.31 3.05 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.39 6.17 8.89 -74.06 -0.66 5.51 16 28 H 0.17 5.50 8.04 -2.91 -0.02 5.47 16 29 H 0.13 3.51 8.03 -2.91 -0.02 3.49 16 30 H 0.38 14.84 8.57 -213.32 -1.83 13.01 16 31 H 0.02 1.05 8.14 -2.38 -0.02 1.04 16 32 H 0.05 2.76 6.83 -2.39 -0.02 2.74 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -63.26 315.34 -1.09 -64.34 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -1.36 Total: 21.59 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 4.88 Total: -15.84 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.35 Total: -104.85 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.99 Total: -12.29 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.31 Total: 3.05 kcal Total: -63.26 -1.09 -64.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773068755.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.348 kcal (2) G-P(sol) polarization free energy of solvation -63.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds