Wall clock time and date at job start Mon Mar 30 2020 04:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46672 * 2 1 4 4 O 1.42896 * 109.46820 * 119.99730 * 2 1 3 5 5 C 1.50690 * 109.47127 * 240.00183 * 2 1 3 6 6 N 1.29133 * 124.77963 * 284.97734 * 5 2 1 7 7 C 1.31390 * 117.32721 * 179.75340 * 6 5 2 8 8 C 1.35473 * 114.13818 * 0.48056 * 7 6 5 9 9 C 1.46866 * 126.12284 * 179.82762 * 8 7 6 10 10 N 1.29942 * 119.99760 * 359.68621 * 9 8 7 11 11 N 1.40105 * 119.99695 * 180.02562 * 10 9 8 12 12 C 1.46499 * 120.00063 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46709 * 330.00359 * 12 11 10 14 14 C 1.52996 * 109.46974 * 89.99895 * 12 11 10 15 15 C 1.50699 * 109.47248 * 209.99951 * 12 11 10 16 16 H 1.07996 * 119.99833 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00169 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99885 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00336 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.46978 * 59.99739 * 19 17 15 21 21 H 1.48498 * 109.47266 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46996 * 300.00208 * 19 17 15 23 23 S 1.70945 * 124.78541 * 104.99699 * 5 2 1 24 24 H 1.08998 * 109.47102 * 59.99435 * 1 2 3 25 25 H 1.08994 * 109.47468 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47091 * 300.00256 * 1 2 3 27 27 H 0.96702 * 114.00330 * 299.99811 * 4 2 1 28 28 H 1.08003 * 122.93368 * 180.31585 * 7 6 5 29 29 H 1.07999 * 119.99894 * 179.68971 * 9 8 7 30 30 H 0.96999 * 119.99953 * 0.02562 * 11 10 9 31 31 H 1.09004 * 109.47636 * 299.99864 * 14 12 11 32 32 H 1.09000 * 109.47465 * 60.00023 * 14 12 11 33 33 H 1.09005 * 109.47252 * 180.02562 * 14 12 11 34 34 H 0.96999 * 119.99698 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0323 -0.7103 -1.2304 6 7 2.0194 -1.9906 -1.3987 7 6 2.4907 -2.4545 -2.5341 8 6 2.9418 -1.4966 -3.3793 9 6 3.5226 -1.7196 -4.7097 10 7 3.6459 -2.9283 -5.1705 11 7 4.2004 -3.1410 -6.4394 12 6 4.3390 -4.5036 -6.9592 13 1 4.4830 -5.1960 -6.1297 14 6 3.0737 -4.8867 -7.7294 15 6 5.5285 -4.5707 -7.8820 16 1 6.1216 -3.6867 -8.0635 17 6 5.8595 -5.7607 -8.4946 18 7 5.1369 -6.8372 -8.2740 19 14 7.3344 -5.8441 -9.6379 20 1 8.5621 -5.4719 -8.8900 21 1 7.4755 -7.2256 -10.1639 22 1 7.1384 -4.9011 -10.7682 23 16 2.6999 0.0650 -2.5999 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7210 -0.2700 1.9980 28 1 2.5185 -3.5076 -2.7717 29 1 3.8471 -0.8789 -5.3050 30 1 4.4926 -2.3860 -6.9738 31 1 2.2133 -4.8383 -7.0620 32 1 2.9296 -4.1944 -8.5589 33 1 3.1766 -5.9008 -8.1158 34 1 5.3700 -7.6745 -8.7047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773068756.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:46 Heat of formation + Delta-G solvation = 8.761565 kcal Electronic energy + Delta-G solvation = -17150.771851 eV Core-core repulsion = 14210.516055 eV Total energy + Delta-G solvation = -2940.255795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.78462 -38.39578 -37.94881 -36.00250 -33.70657 -32.49904 -30.84104 -28.51583 -27.34526 -26.74530 -24.19100 -22.96152 -22.22062 -20.26848 -19.27808 -18.72049 -17.81055 -17.43177 -17.02569 -16.26177 -15.98781 -15.51987 -15.39948 -14.94198 -14.60530 -14.44981 -14.17834 -13.60473 -13.42181 -13.01486 -12.89546 -12.79212 -12.63037 -12.55745 -12.29113 -12.23475 -12.11507 -11.29608 -11.16762 -11.04842 -10.66130 -10.55637 -10.43741 -9.90792 -8.52059 -8.19605 -6.37342 -0.61292 0.17866 0.63121 1.34872 1.42825 1.44582 1.52523 2.08232 2.12685 2.45085 3.09143 3.09673 3.55484 3.81261 3.93518 4.13397 4.24258 4.29673 4.68072 4.71431 4.85056 4.87369 4.95664 5.07208 5.13068 5.19256 5.31192 5.49337 5.71192 5.82813 6.11205 6.33835 6.74682 6.79806 6.96403 7.34046 7.63990 8.85277 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.048034 B = 0.003044 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.782208 B = 9197.221206 C = 9314.090255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.182 3.818 3 H 0.109 0.891 4 O -0.575 6.575 5 C 0.014 3.986 6 N -0.477 5.477 7 C 0.036 3.964 8 C -0.172 4.172 9 C 0.049 3.951 10 N -0.227 5.227 11 N -0.629 5.629 12 C 0.306 3.694 13 H 0.002 0.998 14 C -0.137 4.137 15 C -0.550 4.550 16 H 0.064 0.936 17 C 0.019 3.981 18 N -0.915 5.915 19 Si 0.971 3.029 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.266 1.266 23 S 0.233 5.767 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.099 0.901 27 H 0.403 0.597 28 H 0.165 0.835 29 H 0.135 0.865 30 H 0.378 0.622 31 H 0.017 0.983 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 18.733 13.985 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.120 3.880 3 H 0.126 0.874 4 O -0.385 6.385 5 C -0.263 4.263 6 N -0.191 5.191 7 C -0.120 4.120 8 C -0.295 4.295 9 C -0.162 4.162 10 N -0.039 5.039 11 N -0.366 5.366 12 C 0.202 3.798 13 H 0.020 0.980 14 C -0.197 4.197 15 C -0.589 4.589 16 H 0.082 0.918 17 C -0.181 4.181 18 N -0.553 5.553 19 Si 0.796 3.204 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.191 1.191 23 S 0.488 5.512 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.254 0.746 28 H 0.182 0.818 29 H 0.152 0.848 30 H 0.216 0.784 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.469 17.723 13.765 23.651 hybrid contribution 0.747 -0.336 -1.046 1.329 sum -6.722 17.387 12.719 22.567 Atomic orbital electron populations 1.22463 0.93152 1.02943 1.04748 1.20322 0.94114 0.93407 0.80140 0.87355 1.86607 1.77043 1.58357 1.16463 1.27426 1.04062 0.92664 1.02189 1.66040 1.18036 1.13713 1.21304 1.22099 0.99980 1.01480 0.88488 1.24056 1.09051 0.97261 0.99169 1.22676 1.05729 0.93591 0.94160 1.74037 1.06051 1.23687 1.00153 1.48596 1.67678 1.08899 1.11431 1.18181 0.93175 0.77096 0.91313 0.97982 1.22030 0.96551 1.02414 0.98658 1.21486 1.12533 0.96714 1.28181 0.91792 1.25720 0.99656 0.94840 0.97923 1.70013 1.40184 1.00951 1.44114 0.85412 0.78870 0.77377 0.78768 1.19826 1.20705 1.19096 1.83151 1.54645 1.05083 1.08345 0.90526 0.93378 0.88212 0.74550 0.81828 0.84807 0.78443 0.96342 0.94803 0.91170 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.52 71.98 0.69 -1.45 16 2 C 0.18 2.85 4.08 29.85 0.12 2.97 16 3 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 4 O -0.58 -10.40 13.29 -148.98 -1.98 -12.38 16 5 C 0.01 0.33 6.27 88.50 0.56 0.89 16 6 N -0.48 -15.05 10.49 -190.33 -2.00 -17.05 16 7 C 0.04 1.20 11.07 84.12 0.93 2.13 16 8 C -0.17 -5.15 6.50 23.89 0.16 -4.99 16 9 C 0.05 1.61 11.04 87.23 0.96 2.57 16 10 N -0.23 -9.37 11.20 -52.54 -0.59 -9.96 16 11 N -0.63 -27.94 6.10 -172.53 -1.05 -28.99 16 12 C 0.31 16.00 3.23 44.24 0.14 16.14 16 13 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 14 C -0.14 -6.90 9.29 71.98 0.67 -6.23 16 15 C -0.55 -29.75 8.74 25.60 0.22 -29.53 16 16 H 0.06 3.32 7.79 -2.91 -0.02 3.30 16 17 C 0.02 1.03 5.30 84.65 0.45 1.48 16 18 N -0.91 -51.90 11.32 21.45 0.24 -51.66 16 19 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 S 0.23 4.79 23.16 -56.49 -1.31 3.48 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.40 2.59 9.08 -74.06 -0.67 1.92 16 28 H 0.16 5.89 8.04 -2.91 -0.02 5.86 16 29 H 0.13 3.64 8.03 -2.91 -0.02 3.61 16 30 H 0.38 15.13 8.58 -213.32 -1.83 13.29 16 31 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 3.82 6.07 -2.38 -0.01 3.80 16 34 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -68.78 314.34 -1.13 -69.91 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -1.37 Total: 18.29 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 4.90 Total: -16.01 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -3.40 Total: -107.66 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -1.98 Total: -12.38 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.31 Total: 3.48 kcal Total: -68.78 -1.13 -69.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773068756.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.671 kcal (2) G-P(sol) polarization free energy of solvation -68.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds