Wall clock time and date at job start Mon Mar 30 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99753 * 2 1 4 4 C 1.50704 * 109.46774 * 179.97438 * 3 2 1 5 5 N 1.29915 * 125.36841 * 90.00514 * 4 3 2 6 6 C 1.36099 * 108.47429 * 179.97438 * 5 4 3 7 7 C 1.47277 * 126.46124 * 180.02562 * 6 5 4 8 8 O 1.21533 * 120.00045 * 179.97438 * 7 6 5 9 9 O 1.34777 * 119.99682 * 359.95345 * 7 6 5 10 10 C 1.45202 * 116.99500 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46898 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47129 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47215 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99605 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00197 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99566 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99803 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46951 * 60.00815 * 17 15 13 19 19 H 1.48505 * 109.46659 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47425 * 300.00329 * 17 15 13 21 21 C 1.36175 * 107.08231 * 359.97438 * 6 5 4 22 22 O 1.34058 * 125.36561 * 269.97192 * 4 3 2 23 23 H 1.09000 * 109.47233 * 300.00113 * 1 2 3 24 24 H 1.09004 * 109.47014 * 60.00418 * 1 2 3 25 25 H 1.09003 * 109.47023 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46804 * 59.99930 * 3 2 1 27 27 H 1.08999 * 109.47386 * 299.99656 * 3 2 1 28 28 H 1.09002 * 109.47170 * 299.99993 * 10 9 7 29 29 H 1.09005 * 109.47429 * 60.00221 * 10 9 7 30 30 H 1.09000 * 109.46705 * 300.00096 * 11 10 9 31 31 H 1.08997 * 109.47052 * 59.99616 * 11 10 9 32 32 H 1.09002 * 109.46996 * 300.00032 * 12 11 10 33 33 H 1.08997 * 109.47526 * 59.99835 * 12 11 10 34 34 H 0.97002 * 119.99744 * 180.02562 * 16 15 13 35 35 H 1.08003 * 126.52996 * 179.73955 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2626 1.1270 -1.0584 6 6 5.5607 1.0247 -0.6624 7 6 6.7391 0.9321 -1.5409 8 8 7.8513 0.8449 -1.0586 9 8 6.5841 0.9435 -2.8797 10 6 7.7895 0.8481 -3.6836 11 6 7.4165 0.8760 -5.1672 12 6 8.6865 0.7749 -6.0144 13 6 8.3192 0.8029 -7.4756 14 1 7.2834 0.8842 -7.7706 15 6 9.3054 0.7247 -8.4360 16 7 10.5665 0.6252 -8.0768 17 14 8.8499 0.7588 -10.2473 18 1 8.1474 2.0299 -10.5572 19 1 10.0827 0.6608 -11.0695 20 1 7.9577 -0.3877 -10.5551 21 6 5.5647 1.0255 0.6994 22 8 4.2856 1.1259 1.0942 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 8.4445 1.6895 -3.4574 29 1 8.3049 -0.0851 -3.4564 30 1 6.7616 0.0344 -5.3930 31 1 6.9007 1.8089 -5.3948 32 1 9.3417 1.6162 -5.7886 33 1 9.2018 -0.1582 -5.7867 34 1 11.2604 0.5706 -8.7524 35 1 6.4314 0.9535 1.3398 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774093432.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:54 Heat of formation + Delta-G solvation = -114.741454 kcal Electronic energy + Delta-G solvation = -19261.467563 eV Core-core repulsion = 15840.810653 eV Total energy + Delta-G solvation = -3420.656910 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.81779 -40.04029 -38.39739 -36.50007 -35.25374 -33.93922 -31.95980 -31.59749 -28.32861 -27.24822 -26.18843 -24.96382 -23.01628 -21.97756 -20.81473 -20.28340 -18.40737 -17.63955 -17.21521 -16.60048 -16.54482 -16.19475 -16.06941 -16.05567 -15.73439 -14.45619 -14.16391 -14.03138 -13.46067 -13.15387 -12.90332 -12.23152 -12.16880 -12.05622 -11.86528 -11.59271 -11.10498 -10.93089 -10.83487 -10.60610 -10.53863 -10.37670 -10.33491 -9.69571 -9.49949 -9.49360 -9.14951 -8.35697 -6.00796 -4.03579 0.66038 1.47630 2.07189 2.64174 2.92310 3.26822 3.35006 3.38854 3.41932 3.78557 4.30884 4.45353 4.57410 4.62435 4.79649 4.84644 4.91942 5.12326 5.23120 5.24558 5.35116 5.57272 5.59919 5.64109 6.03389 6.42768 6.45253 6.58372 6.81128 7.01793 7.11480 7.63184 7.74522 7.83786 7.97750 8.39153 9.02436 9.60439 11.10707 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.025191 B = 0.002964 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.245497 B = 9443.450139 C =10441.634445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.162 3.838 4 C 0.190 3.810 5 N -0.415 5.415 6 C -0.052 4.052 7 C 0.549 3.451 8 O -0.505 6.505 9 O -0.334 6.334 10 C 0.067 3.933 11 C -0.109 4.109 12 C 0.025 3.975 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.033 3.967 22 O -0.188 6.188 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.176 1.828 20.916 27.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C 0.084 3.916 4 C -0.020 4.020 5 N -0.146 5.146 6 C -0.170 4.170 7 C 0.393 3.607 8 O -0.394 6.394 9 O -0.249 6.249 10 C -0.006 4.006 11 C -0.146 4.146 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.041 4.041 22 O -0.073 6.073 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -17.792 1.631 20.322 27.059 hybrid contribution 0.208 0.147 -0.337 0.422 sum -17.584 1.778 19.985 26.679 Atomic orbital electron populations 1.22846 0.79200 1.03704 1.00598 1.87969 1.20903 1.25800 1.95613 1.20546 0.80512 0.86632 1.03881 1.25759 0.95570 1.02348 0.78278 1.70909 1.00630 1.13816 1.29260 1.20818 0.91279 1.13209 0.91740 1.19347 0.85949 0.73112 0.82334 1.90889 1.25178 1.46538 1.76775 1.86671 1.39881 1.82015 1.16349 1.23628 0.83454 1.02229 0.91274 1.21773 1.01958 1.02188 0.88726 1.19048 0.90856 0.97644 0.93689 1.21146 0.93277 1.50648 0.90893 0.92442 1.25028 0.94967 0.95210 0.99268 1.69957 0.99475 1.50239 1.33775 0.86598 0.77694 0.78674 0.84690 1.20177 1.21282 1.20169 1.25404 0.85169 0.98345 0.95209 1.84406 1.16764 1.68363 1.37789 0.93470 0.93165 0.88843 0.89742 0.88129 0.91224 0.91227 0.92007 0.92023 0.96208 0.96195 0.92855 0.74530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.45 10.69 -35.23 -0.38 -3.82 16 3 C 0.16 1.19 6.56 36.01 0.24 1.43 16 4 C 0.19 2.11 7.93 -13.09 -0.10 2.01 16 5 N -0.42 -6.01 11.36 -7.67 -0.09 -6.10 16 6 C -0.05 -0.74 7.04 -83.04 -0.58 -1.32 16 7 C 0.55 9.32 7.96 34.40 0.27 9.60 16 8 O -0.50 -9.05 16.68 -19.29 -0.32 -9.38 16 9 O -0.33 -6.28 10.23 -40.70 -0.42 -6.70 16 10 C 0.07 1.30 5.48 37.16 0.20 1.50 16 11 C -0.11 -2.36 5.53 -26.73 -0.15 -2.51 16 12 C 0.02 0.65 4.97 -27.89 -0.14 0.51 16 13 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 17 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 C 0.03 0.34 11.95 29.99 0.36 0.69 16 22 O -0.19 -1.91 10.72 6.55 0.07 -1.84 16 23 H 0.05 0.15 8.14 -51.93 -0.42 -0.28 16 24 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.24 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -34.82 320.49 -4.40 -39.22 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: -4.61 Total: -6.09 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 0.80 Total: -0.55 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.65 Total: -32.51 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -1.04 Total: -21.74 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.82 -4.40 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774093432.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.522 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds