Wall clock time and date at job start Mon Mar 30 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99753 * 2 1 4 4 C 1.50704 * 109.46774 * 179.97438 * 3 2 1 5 5 N 1.29915 * 125.36841 * 90.00514 * 4 3 2 6 6 C 1.36099 * 108.47429 * 179.97438 * 5 4 3 7 7 C 1.47277 * 126.46124 * 180.02562 * 6 5 4 8 8 O 1.21533 * 120.00045 * 179.97438 * 7 6 5 9 9 O 1.34777 * 119.99682 * 359.95345 * 7 6 5 10 10 C 1.45202 * 116.99500 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46898 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47129 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47215 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99605 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00197 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99566 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99803 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46951 * 60.00815 * 17 15 13 19 19 H 1.48505 * 109.46659 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47425 * 300.00329 * 17 15 13 21 21 C 1.36175 * 107.08231 * 359.97438 * 6 5 4 22 22 O 1.34058 * 125.36561 * 269.97192 * 4 3 2 23 23 H 1.09000 * 109.47233 * 300.00113 * 1 2 3 24 24 H 1.09004 * 109.47014 * 60.00418 * 1 2 3 25 25 H 1.09003 * 109.47023 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46804 * 59.99930 * 3 2 1 27 27 H 1.08999 * 109.47386 * 299.99656 * 3 2 1 28 28 H 1.09002 * 109.47170 * 299.99993 * 10 9 7 29 29 H 1.09005 * 109.47429 * 60.00221 * 10 9 7 30 30 H 1.09000 * 109.46705 * 300.00096 * 11 10 9 31 31 H 1.08997 * 109.47052 * 59.99616 * 11 10 9 32 32 H 1.09002 * 109.46996 * 300.00032 * 12 11 10 33 33 H 1.08997 * 109.47526 * 59.99835 * 12 11 10 34 34 H 0.97002 * 119.99744 * 180.02562 * 16 15 13 35 35 H 1.08003 * 126.52996 * 179.73955 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2626 1.1270 -1.0584 6 6 5.5607 1.0247 -0.6624 7 6 6.7391 0.9321 -1.5409 8 8 7.8513 0.8449 -1.0586 9 8 6.5841 0.9435 -2.8797 10 6 7.7895 0.8481 -3.6836 11 6 7.4165 0.8760 -5.1672 12 6 8.6865 0.7749 -6.0144 13 6 8.3192 0.8029 -7.4756 14 1 7.2834 0.8842 -7.7706 15 6 9.3054 0.7247 -8.4360 16 7 10.5665 0.6252 -8.0768 17 14 8.8499 0.7588 -10.2473 18 1 8.1474 2.0299 -10.5572 19 1 10.0827 0.6608 -11.0695 20 1 7.9577 -0.3877 -10.5551 21 6 5.5647 1.0255 0.6994 22 8 4.2856 1.1259 1.0942 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 8.4445 1.6895 -3.4574 29 1 8.3049 -0.0851 -3.4564 30 1 6.7616 0.0344 -5.3930 31 1 6.9007 1.8089 -5.3948 32 1 9.3417 1.6162 -5.7886 33 1 9.2018 -0.1582 -5.7867 34 1 11.2604 0.5706 -8.7524 35 1 6.4314 0.9535 1.3398 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774093432.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:54 Heat of formation + Delta-G solvation = -140.613516 kcal Electronic energy + Delta-G solvation = -19262.589459 eV Core-core repulsion = 15840.810653 eV Total energy + Delta-G solvation = -3421.778807 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.69755 -41.41741 -38.92769 -37.95803 -36.21433 -35.91937 -33.70362 -32.68277 -29.30748 -28.78879 -26.74114 -26.28525 -24.72891 -22.91170 -22.21497 -21.86131 -19.53947 -18.70317 -18.42885 -18.14978 -17.68456 -17.37718 -16.96511 -16.67118 -16.59013 -16.49459 -15.67687 -15.09359 -14.77553 -14.13282 -13.94241 -13.93493 -13.76547 -13.30045 -12.83642 -12.72200 -12.55117 -12.46736 -12.34848 -12.16461 -12.12508 -11.98006 -11.52810 -11.46349 -11.27989 -10.79629 -10.57223 -10.40808 -8.22255 -6.33840 -0.26675 0.50947 1.21875 1.40769 1.44571 1.46646 1.52935 1.77314 2.40705 2.50345 3.11391 3.14572 3.50852 3.53968 3.96359 3.99571 4.05397 4.19819 4.30903 4.36531 4.48766 4.54277 4.63015 4.66085 4.76432 4.85777 4.93067 5.03296 5.24857 5.47112 5.62204 5.78938 6.01584 6.15467 6.20406 6.54030 6.81153 7.35395 8.89818 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.025191 B = 0.002964 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.245497 B = 9443.450139 C =10441.634445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.159 3.841 4 C 0.198 3.802 5 N -0.459 5.459 6 C -0.096 4.096 7 C 0.550 3.450 8 O -0.521 6.521 9 O -0.346 6.346 10 C 0.077 3.923 11 C -0.094 4.094 12 C 0.028 3.972 13 C -0.546 4.546 14 H 0.063 0.937 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.073 3.927 22 O -0.180 6.180 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.000 1.000 33 H -0.001 1.001 34 H 0.265 0.735 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.032 2.190 21.809 29.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C 0.082 3.918 4 C -0.013 4.013 5 N -0.190 5.190 6 C -0.214 4.214 7 C 0.395 3.605 8 O -0.411 6.411 9 O -0.262 6.262 10 C 0.003 3.997 11 C -0.132 4.132 12 C -0.009 4.009 13 C -0.584 4.584 14 H 0.081 0.919 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.793 3.207 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.002 4.002 22 O -0.064 6.064 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.114 0.886 26 H 0.139 0.861 27 H 0.129 0.871 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.074 0.926 35 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -19.672 1.995 21.226 29.009 hybrid contribution 0.724 0.030 -0.493 0.876 sum -18.948 2.024 20.733 28.160 Atomic orbital electron populations 1.23044 0.77275 1.04446 1.02054 1.87907 1.23034 1.26740 1.95935 1.20889 0.78140 0.86575 1.06179 1.26499 0.96822 1.00275 0.77656 1.70838 1.01136 1.15809 1.31180 1.20664 0.90607 1.17331 0.92757 1.19746 0.86890 0.72268 0.81619 1.90866 1.26016 1.47568 1.76674 1.86640 1.39168 1.82618 1.17735 1.23292 0.83791 1.02352 0.90217 1.21467 0.99606 1.02364 0.89758 1.18915 0.92344 0.95638 0.93990 1.21590 0.93753 1.50812 0.92257 0.91880 1.26004 0.94774 0.94507 1.04528 1.70088 1.00640 1.50972 1.35552 0.85438 0.77675 0.79263 0.78301 1.19051 1.20728 1.19121 1.26073 0.85999 0.94075 0.94020 1.84469 1.16624 1.67941 1.37401 0.91317 0.92379 0.88564 0.86089 0.87122 0.91049 0.91229 0.91840 0.91683 0.98184 0.98260 0.92603 0.70810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.42 -6.76 10.69 -148.98 -1.59 -8.35 16 3 C 0.16 1.99 6.56 71.24 0.47 2.45 16 4 C 0.20 4.07 7.93 88.39 0.70 4.77 16 5 N -0.46 -13.03 11.36 -293.09 -3.33 -16.36 16 6 C -0.10 -2.68 7.04 40.38 0.28 -2.40 16 7 C 0.55 18.71 7.96 70.20 0.56 19.27 16 8 O -0.52 -18.63 16.68 19.73 0.33 -18.30 16 9 O -0.35 -13.19 10.23 -56.88 -0.58 -13.77 16 10 C 0.08 3.03 5.48 71.98 0.39 3.42 16 11 C -0.09 -4.16 5.53 30.59 0.17 -3.99 16 12 C 0.03 1.53 4.97 29.85 0.15 1.68 16 13 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 14 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 16 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 17 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 C 0.07 1.33 11.95 67.34 0.80 2.14 16 22 O -0.18 -3.19 10.72 0.53 0.01 -3.19 16 23 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 24 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 25 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 28 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 30 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.28 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -76.07 320.49 3.70 -72.36 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: 1.09 Total: 0.17 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 5.47 Total: -2.21 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -3.04 Total: -73.45 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.84 Total: -43.62 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -76.07 3.70 -72.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774093432.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.252 kcal (2) G-P(sol) polarization free energy of solvation -76.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds