Wall clock time and date at job start Mon Mar 30 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47073 * 2 1 4 4 H 1.09000 * 109.46865 * 55.00101 * 3 2 1 5 5 C 1.50707 * 109.46853 * 174.99679 * 3 2 1 6 6 H 1.07997 * 119.99533 * 120.00494 * 5 3 2 7 7 C 1.37871 * 120.00135 * 299.99881 * 5 3 2 8 8 N 1.31513 * 120.00071 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00098 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46980 * 89.99860 * 9 7 5 11 11 H 1.48498 * 109.47289 * 210.00208 * 9 7 5 12 12 H 1.48504 * 109.46813 * 330.00344 * 9 7 5 13 13 O 1.45192 * 109.47147 * 294.99766 * 3 2 1 14 14 C 1.34230 * 117.00018 * 90.00298 * 13 3 2 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 3 17 17 O 1.42903 * 109.46878 * 179.97438 * 16 14 13 18 18 C 1.35713 * 116.99413 * 179.97438 * 17 16 14 19 19 C 1.41931 * 126.87364 * 179.70852 * 18 17 16 20 20 C 1.35275 * 103.95957 * 179.91023 * 19 18 17 21 21 C 1.50703 * 126.71021 * 180.11015 * 20 19 18 22 22 O 1.34083 * 106.57818 * 0.34965 * 20 19 18 23 23 N 1.20910 * 111.71922 * 359.76474 * 22 20 19 24 24 H 1.09001 * 109.47371 * 300.00362 * 1 2 3 25 25 H 1.09003 * 109.47087 * 60.00261 * 1 2 3 26 26 H 1.09001 * 109.47147 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47371 * 239.99638 * 2 1 3 28 28 H 1.09003 * 109.47087 * 119.99738 * 2 1 3 29 29 H 0.97002 * 119.99847 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 31 31 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 32 32 H 1.08004 * 128.02074 * 0.04142 * 19 18 17 33 33 H 1.08990 * 109.46882 * 180.26201 * 21 20 19 34 34 H 1.08995 * 109.47089 * 300.26461 * 21 20 19 35 35 H 1.09002 * 109.46959 * 60.26304 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3367 2.1729 9 14 6.0049 0.8812 1.3820 10 1 6.4415 2.1142 2.0851 11 1 6.4394 -0.3098 2.1551 12 1 6.6135 0.8416 0.0280 13 8 1.6559 2.0916 -1.2406 14 6 0.4727 2.7255 -1.2559 15 8 -0.2193 2.7370 -0.2656 16 6 0.0070 3.4216 -2.5088 17 8 -1.2713 4.0164 -2.2759 18 6 -1.8361 4.6878 -3.3113 19 6 -3.0923 5.3485 -3.3140 20 6 -3.1916 5.8556 -4.5641 21 6 -4.3365 6.6622 -5.1207 22 8 -2.0747 5.4958 -5.2128 23 7 -1.3353 4.8505 -4.5066 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0611 2.9499 30 1 0.7240 4.1958 -2.7822 31 1 -0.0720 2.6970 -3.3192 32 1 -3.8030 5.4296 -2.5048 33 1 -4.1266 6.9232 -6.1579 34 1 -5.2528 6.0739 -5.0723 35 1 -4.4581 7.5730 -4.5344 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787088217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:36 Heat of formation + Delta-G solvation = -62.744358 kcal Electronic energy + Delta-G solvation = -20213.591305 eV Core-core repulsion = 16795.189158 eV Total energy + Delta-G solvation = -3418.402147 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.04192 -39.96728 -38.64161 -35.81424 -34.04240 -33.58615 -32.67683 -31.43119 -29.06795 -28.02993 -27.09606 -23.56050 -23.34021 -21.92899 -20.65657 -19.56131 -18.11577 -17.99666 -17.08097 -16.93758 -16.48693 -16.17571 -15.55748 -14.79812 -14.62569 -14.12643 -14.01002 -13.60647 -13.48795 -12.89761 -12.84713 -12.72801 -12.30583 -11.70655 -11.46949 -11.38066 -11.24443 -11.20204 -10.97459 -10.71326 -10.31933 -9.84718 -9.70023 -9.69978 -9.43583 -9.31445 -8.86932 -8.49965 -6.22400 -4.30028 1.23335 2.13645 2.27276 2.81475 2.91962 3.22894 3.28615 3.32869 3.74871 4.04961 4.29743 4.58268 4.75859 4.96175 5.02591 5.09125 5.11665 5.14006 5.29967 5.43907 5.51375 5.70148 6.19352 6.26026 6.40841 6.80902 6.87157 6.92282 7.11537 7.16795 7.56649 7.67905 7.87227 8.09206 8.10223 8.52168 8.81137 9.35187 10.84407 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.041393 B = 0.003513 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.272832 B = 7969.382366 C = 8354.728606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.050 0.950 5 C -0.523 4.523 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.913 3.087 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.456 3.544 15 O -0.494 6.494 16 C 0.070 3.930 17 O -0.259 6.259 18 C 0.217 3.783 19 C -0.232 4.232 20 C -0.013 4.013 21 C -0.074 4.074 22 O 0.099 5.901 23 N -0.410 5.410 24 H 0.054 0.946 25 H 0.030 0.970 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.111 0.889 29 H 0.267 0.733 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.179 0.821 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.278 9.581 -12.744 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.561 4.561 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.740 3.260 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 O -0.266 6.266 14 C 0.297 3.703 15 O -0.382 6.382 16 C -0.007 4.007 17 O -0.165 6.165 18 C 0.019 3.981 19 C -0.254 4.254 20 C -0.077 4.077 21 C -0.131 4.131 22 O 0.038 5.962 23 N -0.138 5.138 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.129 0.871 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.196 0.804 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.385 8.995 -12.511 19.770 hybrid contribution 0.449 -0.074 0.794 0.916 sum -11.936 8.921 -11.717 18.956 Atomic orbital electron populations 1.21869 0.98300 0.99166 1.00756 1.22041 0.92680 0.99171 1.03561 1.20800 0.95176 0.88795 0.78159 0.93271 1.21029 0.89424 1.39245 1.06420 0.91200 1.24890 0.99387 0.94647 0.94995 1.69888 1.35484 1.37666 1.09445 0.86250 0.83639 0.77732 0.78395 1.20364 1.20890 1.19544 1.86456 1.33008 1.62338 1.44812 1.22388 0.81751 0.77835 0.88367 1.90660 1.55105 1.57327 1.35143 1.21992 0.83621 0.98854 0.96196 1.86240 1.34077 1.65770 1.30365 1.22034 0.92681 0.96236 0.87122 1.21793 0.97902 1.06140 0.99563 1.24337 0.91403 1.00100 0.91825 1.20366 0.91848 0.98460 1.02447 1.84799 1.23393 1.52407 1.35570 1.74190 1.17483 1.18033 1.04078 0.92717 0.95097 0.94625 0.93802 0.87119 0.92289 0.87783 0.87904 0.80367 0.89657 0.88928 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.56 37.15 0.32 -2.88 16 2 C -0.14 -3.41 5.49 -26.73 -0.15 -3.55 16 3 C 0.22 5.94 2.25 -27.88 -0.06 5.88 16 4 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 5 C -0.52 -14.63 8.90 -34.44 -0.31 -14.94 16 6 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.99 11.29 55.43 0.63 -24.37 16 9 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 O -0.35 -8.34 9.81 -39.26 -0.38 -8.73 16 14 C 0.46 9.80 6.49 36.01 0.23 10.03 16 15 O -0.49 -11.91 13.64 -25.48 -0.35 -12.26 16 16 C 0.07 1.17 6.25 36.01 0.23 1.40 16 17 O -0.26 -4.46 9.74 -38.80 -0.38 -4.83 16 18 C 0.22 3.18 8.01 -16.66 -0.13 3.05 16 19 C -0.23 -2.55 11.11 -39.22 -0.44 -2.99 16 20 C -0.01 -0.12 7.48 -35.36 -0.26 -0.38 16 21 C -0.07 -0.29 10.45 36.01 0.38 0.08 16 22 O 0.10 1.16 11.19 17.07 0.19 1.35 16 23 N -0.41 -5.87 11.54 30.38 0.35 -5.52 16 24 H 0.05 1.28 7.80 -51.93 -0.40 0.87 16 25 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.11 2.98 5.95 -51.93 -0.31 2.67 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 31 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.18 1.55 8.06 -52.48 -0.42 1.13 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -32.13 306.47 -4.96 -37.09 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.33 Total: -0.67 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.29 Total: -2.66 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.98 Total: -29.88 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.92 Total: -24.48 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.13 -4.96 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.657 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds