Wall clock time and date at job start Mon Mar 30 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47073 * 2 1 4 4 H 1.09000 * 109.46865 * 55.00101 * 3 2 1 5 5 C 1.50707 * 109.46853 * 174.99679 * 3 2 1 6 6 H 1.07997 * 119.99533 * 120.00494 * 5 3 2 7 7 C 1.37871 * 120.00135 * 299.99881 * 5 3 2 8 8 N 1.31513 * 120.00071 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00098 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46980 * 89.99860 * 9 7 5 11 11 H 1.48498 * 109.47289 * 210.00208 * 9 7 5 12 12 H 1.48504 * 109.46813 * 330.00344 * 9 7 5 13 13 O 1.45192 * 109.47147 * 294.99766 * 3 2 1 14 14 C 1.34230 * 117.00018 * 90.00298 * 13 3 2 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 3 17 17 O 1.42903 * 109.46878 * 179.97438 * 16 14 13 18 18 C 1.35713 * 116.99413 * 179.97438 * 17 16 14 19 19 C 1.41931 * 126.87364 * 179.70852 * 18 17 16 20 20 C 1.35275 * 103.95957 * 179.91023 * 19 18 17 21 21 C 1.50703 * 126.71021 * 180.11015 * 20 19 18 22 22 O 1.34083 * 106.57818 * 0.34965 * 20 19 18 23 23 N 1.20910 * 111.71922 * 359.76474 * 22 20 19 24 24 H 1.09001 * 109.47371 * 300.00362 * 1 2 3 25 25 H 1.09003 * 109.47087 * 60.00261 * 1 2 3 26 26 H 1.09001 * 109.47147 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47371 * 239.99638 * 2 1 3 28 28 H 1.09003 * 109.47087 * 119.99738 * 2 1 3 29 29 H 0.97002 * 119.99847 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 31 31 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 32 32 H 1.08004 * 128.02074 * 0.04142 * 19 18 17 33 33 H 1.08990 * 109.46882 * 180.26201 * 21 20 19 34 34 H 1.08995 * 109.47089 * 300.26461 * 21 20 19 35 35 H 1.09002 * 109.46959 * 60.26304 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3367 2.1729 9 14 6.0049 0.8812 1.3820 10 1 6.4415 2.1142 2.0851 11 1 6.4394 -0.3098 2.1551 12 1 6.6135 0.8416 0.0280 13 8 1.6559 2.0916 -1.2406 14 6 0.4727 2.7255 -1.2559 15 8 -0.2193 2.7370 -0.2656 16 6 0.0070 3.4216 -2.5088 17 8 -1.2713 4.0164 -2.2759 18 6 -1.8361 4.6878 -3.3113 19 6 -3.0923 5.3485 -3.3140 20 6 -3.1916 5.8556 -4.5641 21 6 -4.3365 6.6622 -5.1207 22 8 -2.0747 5.4958 -5.2128 23 7 -1.3353 4.8505 -4.5066 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0611 2.9499 30 1 0.7240 4.1958 -2.7822 31 1 -0.0720 2.6970 -3.3192 32 1 -3.8030 5.4296 -2.5048 33 1 -4.1266 6.9232 -6.1579 34 1 -5.2528 6.0739 -5.0723 35 1 -4.4581 7.5730 -4.5344 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787088217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:36 Heat of formation + Delta-G solvation = -83.752882 kcal Electronic energy + Delta-G solvation = -20214.502303 eV Core-core repulsion = 16795.189158 eV Total energy + Delta-G solvation = -3419.313145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.98949 -41.68988 -40.01130 -37.70035 -35.61041 -34.80180 -33.64927 -33.40804 -30.53831 -29.16664 -28.56041 -25.33294 -24.52005 -23.37526 -22.10309 -21.41220 -19.35924 -18.99968 -18.85310 -18.31681 -17.92366 -17.70464 -17.30089 -16.49419 -16.32257 -15.32931 -14.92027 -14.83582 -14.64123 -14.25225 -14.05752 -13.89521 -13.45414 -13.35039 -13.22295 -13.21303 -12.94682 -12.84606 -12.62398 -12.17624 -12.14617 -11.81512 -11.59406 -11.39948 -10.90208 -10.58312 -10.53817 -10.30902 -8.31293 -6.48816 0.43368 0.93637 1.07193 1.16998 1.41483 1.42503 1.54845 2.11189 2.30747 2.45579 2.98563 3.05345 3.65267 3.79322 3.81144 3.90664 3.97692 4.31441 4.33395 4.37826 4.48368 4.75345 4.78024 4.81483 4.91159 5.01974 5.14127 5.27185 5.28781 5.46139 5.60203 5.73526 5.87524 6.02017 6.53612 6.80040 7.20436 7.22019 8.75693 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.041393 B = 0.003513 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.272832 B = 7969.382366 C = 8354.728606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.010 0.990 5 C -0.553 4.553 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.983 3.017 10 H -0.273 1.273 11 H -0.274 1.274 12 H -0.263 1.263 13 O -0.354 6.354 14 C 0.453 3.547 15 O -0.524 6.524 16 C 0.084 3.916 17 O -0.281 6.281 18 C 0.187 3.813 19 C -0.249 4.249 20 C 0.011 3.989 21 C -0.073 4.073 22 O 0.097 5.903 23 N -0.431 5.431 24 H 0.036 0.964 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.272 0.728 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.197 0.803 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 10.357 -14.342 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.806 3.194 10 H -0.198 1.198 11 H -0.199 1.199 12 H -0.187 1.187 13 O -0.271 6.271 14 C 0.296 3.704 15 O -0.414 6.414 16 C 0.008 3.992 17 O -0.188 6.188 18 C -0.009 4.009 19 C -0.270 4.270 20 C -0.052 4.052 21 C -0.130 4.130 22 O 0.036 5.964 23 N -0.158 5.158 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.214 0.786 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.013 9.783 -14.136 21.561 hybrid contribution 0.497 -0.215 1.230 1.344 sum -12.516 9.568 -12.906 20.366 Atomic orbital electron populations 1.21728 0.96336 1.00808 0.99978 1.21893 0.94382 0.97836 1.02718 1.20536 0.94822 0.89394 0.78033 0.97212 1.21316 0.90177 1.40351 1.07161 0.91413 1.25815 1.04394 0.93721 0.94255 1.70006 1.37557 1.37713 1.09834 0.85176 0.77416 0.78058 0.78728 1.19795 1.19899 1.18706 1.86435 1.34526 1.62820 1.43341 1.23262 0.80504 0.77000 0.89660 1.90641 1.55628 1.58335 1.36777 1.21889 0.84398 0.99447 0.93423 1.86174 1.33971 1.66591 1.32058 1.22452 0.94098 0.97379 0.87020 1.22163 0.97166 1.06533 1.01157 1.25195 0.90925 0.98308 0.90795 1.20691 0.90248 0.98636 1.03414 1.84753 1.24207 1.51993 1.35440 1.74174 1.18633 1.18891 1.04135 0.94527 0.94782 0.91666 0.93191 0.89184 0.91882 0.86054 0.85806 0.78568 0.88104 0.86867 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 8.56 71.98 0.62 -5.27 16 2 C -0.13 -6.63 5.49 30.59 0.17 -6.46 16 3 C 0.22 12.41 2.25 29.85 0.07 12.48 16 4 H 0.01 0.62 7.16 -2.39 -0.02 0.61 16 5 C -0.55 -31.54 8.90 25.60 0.23 -31.31 16 6 H 0.07 3.79 7.81 -2.91 -0.02 3.76 16 7 C 0.02 1.00 5.29 84.65 0.45 1.45 16 8 N -0.91 -52.33 11.29 21.45 0.24 -52.09 16 9 Si 0.98 42.95 29.54 68.60 2.03 44.98 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 12 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 13 O -0.35 -17.32 9.81 -51.41 -0.50 -17.83 16 14 C 0.45 19.89 6.49 71.24 0.46 20.35 16 15 O -0.52 -26.15 13.64 28.40 0.39 -25.77 16 16 C 0.08 2.83 6.25 71.24 0.45 3.27 16 17 O -0.28 -9.73 9.74 -71.27 -0.69 -10.42 16 18 C 0.19 5.39 8.01 85.79 0.69 6.08 16 19 C -0.25 -5.10 11.11 22.50 0.25 -4.85 16 20 C 0.01 0.18 7.48 25.00 0.19 0.36 16 21 C -0.07 -0.29 10.45 71.24 0.74 0.45 16 22 O 0.10 2.12 11.19 71.24 0.80 2.92 16 23 N -0.43 -11.98 11.54 -172.61 -1.99 -13.98 16 24 H 0.04 1.74 7.80 -2.39 -0.02 1.72 16 25 H 0.03 1.47 6.06 -2.39 -0.01 1.45 16 26 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.09 4.97 5.95 -2.39 -0.01 4.96 16 29 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 31 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 32 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -71.59 306.47 5.67 -65.92 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.10 Total: 9.70 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 4.30 Total: -3.44 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -1.75 Total: -66.06 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -0.01 Total: -51.09 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -71.59 5.67 -65.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.834 kcal (2) G-P(sol) polarization free energy of solvation -71.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds