Wall clock time and date at job start Mon Mar 30 2020 05:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47197 * 2 1 4 4 H 1.09001 * 109.46842 * 305.17264 * 3 2 1 5 5 C 1.50696 * 109.47007 * 185.17445 * 3 2 1 6 6 H 1.08005 * 119.99951 * 244.94437 * 5 3 2 7 7 C 1.37873 * 120.00274 * 64.94131 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.03558 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.03102 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 O 1.45202 * 109.47466 * 65.16933 * 3 2 1 14 14 C 1.34771 * 117.00095 * 270.00235 * 13 3 2 15 15 O 1.21536 * 120.00038 * 359.97438 * 14 13 3 16 16 C 1.47269 * 120.00108 * 179.97438 * 14 13 3 17 17 C 1.36167 * 126.46433 * 179.71210 * 16 14 13 18 18 O 1.34234 * 106.94435 * 179.90128 * 17 16 14 19 19 C 1.34052 * 108.23985 * 0.36432 * 18 17 16 20 20 C 1.50702 * 125.36749 * 179.78836 * 19 18 17 21 21 O 1.42901 * 109.47137 * 269.97922 * 20 19 18 22 22 C 1.42898 * 113.99563 * 180.02562 * 21 20 19 23 23 N 1.29917 * 109.26380 * 359.77114 * 19 18 17 24 24 H 1.09004 * 109.46582 * 60.00154 * 1 2 3 25 25 H 1.08996 * 109.47039 * 300.00545 * 1 2 3 26 26 H 1.08997 * 109.46998 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46582 * 119.99846 * 2 1 3 28 28 H 1.08996 * 109.47039 * 239.99455 * 2 1 3 29 29 H 0.97007 * 120.00179 * 180.02562 * 8 7 5 30 30 H 1.08007 * 126.52701 * 0.03470 * 17 16 14 31 31 H 1.09000 * 109.46909 * 29.97542 * 20 19 18 32 32 H 1.08995 * 109.46835 * 149.97461 * 20 19 18 33 33 H 1.09000 * 109.47853 * 60.00052 * 22 21 20 34 34 H 1.09003 * 109.46921 * 179.97438 * 22 21 20 35 35 H 1.09003 * 109.47456 * 299.99454 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6030 1.9823 -0.8401 5 6 3.5416 1.4444 -0.1281 6 1 4.1522 1.8155 0.6817 7 6 4.1359 0.9723 -1.2792 8 7 3.3952 0.6501 -2.3171 9 14 5.9931 0.7904 -1.3645 10 1 6.3887 -0.5213 -0.7919 11 1 6.4332 0.8653 -2.7808 12 1 6.6335 1.8826 -0.5887 13 8 1.6595 2.0905 1.2424 14 6 0.4716 2.7268 1.2617 15 8 -0.2269 2.7401 0.2672 16 6 0.0199 3.4060 2.4878 17 6 -1.1465 4.0893 2.6516 18 8 -1.1595 4.5439 3.9146 19 6 -0.0237 4.1564 4.5118 20 6 0.3617 4.4633 5.9360 21 8 1.0853 5.6949 5.9787 22 6 1.5005 6.0796 7.2908 23 7 0.6923 3.4741 3.6693 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 3.8133 0.3175 -3.1268 30 1 -1.9158 4.2356 1.9077 31 1 -0.5379 4.5492 6.5453 32 1 0.9881 3.6601 6.3239 33 1 2.1508 5.3100 7.7066 34 1 2.0431 7.0235 7.2380 35 1 0.6247 6.1989 7.9287 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787090761.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:20 Heat of formation + Delta-G solvation = -108.747498 kcal Electronic energy + Delta-G solvation = -20382.677588 eV Core-core repulsion = 16962.280595 eV Total energy + Delta-G solvation = -3420.396993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.46315 -39.42803 -38.20759 -35.84030 -34.88384 -33.38658 -31.64161 -31.33747 -28.04685 -27.32130 -25.99331 -24.64258 -22.99513 -21.74083 -20.66109 -19.64756 -18.02937 -17.36342 -16.73405 -16.55319 -16.18391 -16.07289 -15.78188 -15.32100 -15.14778 -14.43832 -13.80712 -13.24810 -13.02592 -12.82010 -12.70450 -12.25165 -11.87928 -11.54948 -11.32109 -11.26849 -11.13818 -10.94681 -10.74125 -10.62677 -10.25609 -10.15979 -9.97072 -9.76147 -9.38454 -9.14809 -8.81166 -8.43289 -6.16534 -4.20523 1.04120 1.89152 2.40268 3.24366 3.29117 3.34278 3.39409 3.52906 3.66885 4.06579 4.37237 4.59526 4.82924 4.93875 4.99491 5.07889 5.16751 5.36288 5.39805 5.46387 5.59852 6.05280 6.19695 6.27150 6.41553 6.64072 6.85179 6.93063 7.13918 7.16544 7.45958 7.60985 7.69771 7.87254 8.14517 8.60569 8.92319 9.43533 10.92427 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.020938 B = 0.004647 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.953646 B = 6023.440036 C = 7021.422410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.218 3.782 4 H 0.055 0.945 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.909 3.091 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.331 6.331 14 C 0.540 3.460 15 O -0.509 6.509 16 C -0.042 4.042 17 C 0.019 3.981 18 O -0.192 6.192 19 C 0.180 3.820 20 C 0.164 3.836 21 O -0.384 6.384 22 C 0.033 3.967 23 N -0.412 5.412 24 H 0.055 0.945 25 H 0.032 0.968 26 H 0.035 0.965 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.266 0.734 30 H 0.236 0.764 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 7.016 16.222 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.165 3.835 4 H 0.073 0.927 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.736 3.264 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.196 1.196 13 O -0.245 6.245 14 C 0.383 3.617 15 O -0.399 6.399 16 C -0.161 4.161 17 C -0.054 4.054 18 O -0.078 6.078 19 C -0.029 4.029 20 C 0.087 3.913 21 O -0.302 6.302 22 C -0.063 4.063 23 N -0.143 5.143 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.252 0.748 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.865 6.777 15.709 18.830 hybrid contribution 0.184 -0.030 -0.266 0.325 sum -7.681 6.748 15.443 18.521 Atomic orbital electron populations 1.21869 0.98163 0.99201 1.00899 1.21936 0.92911 0.99298 1.02554 1.20793 0.95437 0.88679 0.78551 0.92749 1.21005 0.89472 1.43240 1.02264 0.91182 1.24883 0.99155 0.95076 0.94649 1.69973 1.35684 1.43490 1.03329 0.86326 0.84022 0.78867 0.77181 1.20240 1.21066 1.19630 1.86657 1.32517 1.61524 1.43846 1.19297 0.81482 0.76387 0.84532 1.90838 1.55845 1.59306 1.33948 1.21141 0.94640 1.06457 0.93870 1.25355 1.00015 0.96111 0.83893 1.84360 1.39954 1.60400 1.23047 1.25713 0.82041 0.97693 0.97467 1.20495 0.97180 0.88891 0.84746 1.87981 1.74326 1.38474 1.29445 1.22823 0.99125 1.01067 0.83310 1.70928 1.28392 1.15357 0.99636 0.92569 0.94871 0.94635 0.93566 0.88790 0.92409 0.74757 0.89966 0.88313 0.93270 0.88969 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.57 37.16 0.32 -2.84 16 2 C -0.13 -3.23 5.53 -26.73 -0.15 -3.38 16 3 C 0.22 5.96 2.12 -27.89 -0.06 5.90 16 4 H 0.05 1.63 7.13 -51.93 -0.37 1.26 16 5 C -0.52 -15.06 8.83 -34.44 -0.30 -15.36 16 6 H 0.07 2.03 7.82 -52.48 -0.41 1.62 16 7 C 0.06 1.82 5.20 -17.82 -0.09 1.72 16 8 N -0.89 -25.51 12.01 55.43 0.67 -24.85 16 9 Si 0.91 21.49 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 O -0.33 -8.47 9.82 -40.69 -0.40 -8.87 16 14 C 0.54 12.14 6.41 34.40 0.22 12.36 16 15 O -0.51 -11.81 14.08 -19.29 -0.27 -12.08 16 16 C -0.04 -0.78 7.04 -83.04 -0.58 -1.36 16 17 C 0.02 0.27 11.95 29.99 0.36 0.63 16 18 O -0.19 -2.55 10.72 6.57 0.07 -2.48 16 19 C 0.18 2.55 7.93 -13.09 -0.10 2.45 16 20 C 0.16 1.61 6.56 36.01 0.24 1.84 16 21 O -0.38 -4.30 10.69 -35.23 -0.38 -4.68 16 22 C 0.03 0.22 11.01 101.05 1.11 1.33 16 23 N -0.41 -7.50 11.36 -7.67 -0.09 -7.58 16 24 H 0.06 1.28 7.80 -51.93 -0.41 0.87 16 25 H 0.03 0.71 6.05 -51.93 -0.31 0.39 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.09 2.51 6.65 -51.93 -0.35 2.16 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.24 2.39 8.06 -52.48 -0.42 1.97 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 309.51 15.07 4.66 4.66 Total: -1.00 -33.78 309.51 -4.17 -37.94 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.36 Total: -1.83 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 0.95 Total: 3.30 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.58 Total: -32.43 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.98 Total: -28.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.78 -4.17 -37.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090761.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.803 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds