Wall clock time and date at job start Mon Mar 30 2020 05:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41375 * 126.80327 * 2 1 4 4 C 1.35452 * 103.98430 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.77266 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.46955 * 90.00058 * 5 4 3 7 7 C 1.42905 * 114.00134 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47264 * 179.97438 * 7 6 5 9 9 O 1.20825 * 120.00021 * 359.97438 * 8 7 6 10 10 O 1.34225 * 119.99932 * 180.02562 * 8 7 6 11 11 C 1.45192 * 117.00088 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47508 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.47480 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99937 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99899 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99802 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00352 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47094 * 89.99415 * 17 15 13 19 19 H 1.48497 * 109.47592 * 209.99984 * 17 15 13 20 20 H 1.48507 * 109.46906 * 329.99698 * 17 15 13 21 21 O 1.34032 * 106.44825 * 0.23819 * 4 3 2 22 22 N 1.20922 * 111.56876 * 359.56766 * 21 4 3 23 23 H 1.09000 * 109.47272 * 90.00329 * 1 2 3 24 24 H 1.09004 * 109.47554 * 209.99965 * 1 2 3 25 25 H 1.09001 * 109.47119 * 329.99874 * 1 2 3 26 26 H 1.07997 * 128.00537 * 0.02909 * 3 2 1 27 27 H 1.08994 * 109.47512 * 330.00027 * 5 4 3 28 28 H 1.09002 * 109.46988 * 209.99474 * 5 4 3 29 29 H 1.09001 * 109.47103 * 300.00246 * 7 6 5 30 30 H 1.09004 * 109.47054 * 59.99750 * 7 6 5 31 31 H 1.09004 * 109.47439 * 299.99679 * 11 10 8 32 32 H 1.09001 * 109.47619 * 59.99850 * 11 10 8 33 33 H 1.08998 * 109.47383 * 300.00401 * 12 11 10 34 34 H 1.09009 * 109.47031 * 59.99914 * 12 11 10 35 35 H 0.97003 * 120.00269 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6067 -0.0006 5 6 4.9021 1.3695 -0.0014 6 8 5.3136 1.6107 1.3457 7 6 6.5426 2.3313 1.4578 8 6 6.8781 2.5288 2.9137 9 8 6.1403 2.0972 3.7676 10 8 7.9961 3.1850 3.2617 11 6 8.2559 3.3373 4.6821 12 6 9.5644 4.1047 4.8818 13 6 9.8338 4.2633 6.3560 14 1 9.1412 3.8571 7.0783 15 6 10.9650 4.9262 6.7827 16 7 11.2003 5.0642 8.0692 17 14 12.1633 5.6282 5.5335 18 1 11.7729 7.0222 5.2022 19 1 13.5343 5.6203 6.1039 20 1 12.1352 4.8001 4.3011 21 8 3.4537 -0.7254 -0.0062 22 7 2.2868 -1.0424 -0.0005 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 2.0709 2.1742 0.0004 27 1 4.7648 2.3208 -0.5152 28 1 5.6657 0.7857 -0.5155 29 1 7.3400 1.7672 0.9740 30 1 6.4397 3.3027 0.9740 31 1 7.4370 3.8886 5.1442 32 1 8.3380 2.3535 5.1441 33 1 10.3832 3.5532 4.4198 34 1 9.4828 5.0886 4.4198 35 1 11.9959 5.5309 8.3695 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801460549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:44 Heat of formation + Delta-G solvation = -72.407305 kcal Electronic energy + Delta-G solvation = -19177.596891 eV Core-core repulsion = 15758.775728 eV Total energy + Delta-G solvation = -3418.821164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.23823 -40.16779 -38.32157 -36.15501 -35.11572 -33.35978 -33.02693 -30.92404 -29.05504 -29.01655 -26.67575 -24.99103 -23.41711 -21.22703 -20.68490 -20.53045 -18.16832 -17.93413 -17.39879 -16.89670 -16.79051 -16.63234 -15.84638 -15.65931 -15.05579 -14.25055 -14.14170 -13.73676 -13.59793 -13.45275 -13.29325 -12.85194 -12.70616 -12.44750 -12.14398 -11.56716 -11.46967 -11.31834 -10.73856 -10.59937 -10.34080 -10.24247 -10.04135 -9.96792 -9.81757 -9.75179 -9.37881 -8.64977 -6.15187 -4.16787 0.96012 1.84617 2.39624 2.40653 2.80736 3.25548 3.33134 3.36732 3.78647 3.84825 4.13811 4.35968 4.55679 4.58624 4.75597 4.81267 4.90733 4.95327 4.99196 5.09166 5.14102 5.18062 5.38980 5.40690 5.74872 5.91314 5.92834 6.38617 6.47167 6.70904 7.13929 7.17707 7.59244 7.92963 8.05266 8.36992 8.86502 9.43862 10.97313 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.054497 B = 0.002559 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.666752 B =10940.761233 C =11190.222994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.011 3.989 3 C -0.205 4.205 4 C -0.030 4.030 5 C 0.144 3.856 6 O -0.361 6.361 7 C 0.072 3.928 8 C 0.455 3.545 9 O -0.492 6.492 10 O -0.360 6.360 11 C 0.084 3.916 12 C -0.009 4.009 13 C -0.529 4.529 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.882 3.118 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.263 1.263 21 O 0.109 5.891 22 N -0.359 5.359 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.175 0.825 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.024 0.976 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.897 -5.835 -22.049 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C -0.226 4.226 4 C -0.094 4.094 5 C 0.067 3.933 6 O -0.280 6.280 7 C -0.006 4.006 8 C 0.296 3.704 9 O -0.379 6.379 10 O -0.277 6.277 11 C 0.012 3.988 12 C -0.046 4.046 13 C -0.567 4.567 14 H 0.094 0.906 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.709 3.291 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.188 1.188 21 O 0.041 5.959 22 N -0.063 5.063 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.192 0.808 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.301 -7.261 -21.438 27.893 hybrid contribution 0.678 1.327 -0.474 1.564 sum -15.623 -5.934 -21.913 27.558 Atomic orbital electron populations 1.20180 0.85701 1.04051 1.03380 1.23652 0.99242 0.88723 1.03103 1.22507 0.91002 1.01405 1.07684 1.23896 0.97339 0.83930 1.04212 1.20650 0.89996 0.97818 0.84849 1.88046 1.38957 1.76296 1.24749 1.21724 0.87829 0.98719 0.92282 1.22873 0.80041 0.76156 0.91334 1.90696 1.49361 1.45706 1.52161 1.86435 1.40254 1.68362 1.32638 1.23448 1.00283 1.01467 0.73638 1.19637 0.91115 0.95454 0.98429 1.20834 1.08893 1.37533 0.89391 0.90615 1.24947 0.97527 0.95316 0.95278 1.69896 1.27522 1.42209 1.13764 0.86736 0.80415 0.79935 0.82012 1.20057 1.21162 1.18758 1.84833 1.21601 1.22530 1.66966 1.73872 0.89283 1.24154 1.18958 0.90105 0.90434 0.89836 0.80755 0.89023 0.90028 0.88439 0.88514 0.91522 0.91485 0.95303 0.95750 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.47 36.00 0.38 -0.10 16 2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16 3 C -0.20 -1.81 11.06 -39.38 -0.44 -2.24 16 4 C -0.03 -0.29 7.12 -35.30 -0.25 -0.54 16 5 C 0.14 1.05 6.50 36.01 0.23 1.28 16 6 O -0.36 -4.22 9.86 -55.18 -0.54 -4.77 16 7 C 0.07 0.73 6.53 36.01 0.24 0.97 16 8 C 0.46 7.38 8.03 36.01 0.29 7.67 16 9 O -0.49 -9.93 16.25 -25.48 -0.41 -10.34 16 10 O -0.36 -6.45 10.22 -39.24 -0.40 -6.85 16 11 C 0.08 1.76 5.40 37.16 0.20 1.96 16 12 C -0.01 -0.21 4.42 -27.88 -0.12 -0.33 16 13 C -0.53 -14.88 9.66 -34.44 -0.33 -15.21 16 14 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 17 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 21 O 0.11 1.30 11.20 17.20 0.19 1.49 16 22 N -0.36 -4.41 12.07 33.42 0.40 -4.01 16 23 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.41 8.13 -51.93 -0.42 0.99 16 32 H 0.07 1.43 8.13 -51.93 -0.42 1.00 16 33 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 34 H 0.02 0.56 7.57 -51.92 -0.39 0.17 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -35.18 316.16 -4.98 -40.16 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -4.58 Total: -5.38 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -0.51 Total: -5.08 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 1.18 Total: -30.38 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -1.17 Total: -20.47 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.18 -4.98 -40.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801460549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.248 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds