Wall clock time and date at job start Mon Mar 30 2020 05:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41375 * 126.80327 * 2 1 4 4 C 1.35452 * 103.98430 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.77266 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.46955 * 90.00058 * 5 4 3 7 7 C 1.42905 * 114.00134 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47264 * 179.97438 * 7 6 5 9 9 O 1.20825 * 120.00021 * 359.97438 * 8 7 6 10 10 O 1.34225 * 119.99932 * 180.02562 * 8 7 6 11 11 C 1.45192 * 117.00088 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47508 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.47480 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99937 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99899 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99802 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00352 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47094 * 89.99415 * 17 15 13 19 19 H 1.48497 * 109.47592 * 209.99984 * 17 15 13 20 20 H 1.48507 * 109.46906 * 329.99698 * 17 15 13 21 21 O 1.34032 * 106.44825 * 0.23819 * 4 3 2 22 22 N 1.20922 * 111.56876 * 359.56766 * 21 4 3 23 23 H 1.09000 * 109.47272 * 90.00329 * 1 2 3 24 24 H 1.09004 * 109.47554 * 209.99965 * 1 2 3 25 25 H 1.09001 * 109.47119 * 329.99874 * 1 2 3 26 26 H 1.07997 * 128.00537 * 0.02909 * 3 2 1 27 27 H 1.08994 * 109.47512 * 330.00027 * 5 4 3 28 28 H 1.09002 * 109.46988 * 209.99474 * 5 4 3 29 29 H 1.09001 * 109.47103 * 300.00246 * 7 6 5 30 30 H 1.09004 * 109.47054 * 59.99750 * 7 6 5 31 31 H 1.09004 * 109.47439 * 299.99679 * 11 10 8 32 32 H 1.09001 * 109.47619 * 59.99850 * 11 10 8 33 33 H 1.08998 * 109.47383 * 300.00401 * 12 11 10 34 34 H 1.09009 * 109.47031 * 59.99914 * 12 11 10 35 35 H 0.97003 * 120.00269 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6067 -0.0006 5 6 4.9021 1.3695 -0.0014 6 8 5.3136 1.6107 1.3457 7 6 6.5426 2.3313 1.4578 8 6 6.8781 2.5288 2.9137 9 8 6.1403 2.0972 3.7676 10 8 7.9961 3.1850 3.2617 11 6 8.2559 3.3373 4.6821 12 6 9.5644 4.1047 4.8818 13 6 9.8338 4.2633 6.3560 14 1 9.1412 3.8571 7.0783 15 6 10.9650 4.9262 6.7827 16 7 11.2003 5.0642 8.0692 17 14 12.1633 5.6282 5.5335 18 1 11.7729 7.0222 5.2022 19 1 13.5343 5.6203 6.1039 20 1 12.1352 4.8001 4.3011 21 8 3.4537 -0.7254 -0.0062 22 7 2.2868 -1.0424 -0.0005 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 2.0709 2.1742 0.0004 27 1 4.7648 2.3208 -0.5152 28 1 5.6657 0.7857 -0.5155 29 1 7.3400 1.7672 0.9740 30 1 6.4397 3.3027 0.9740 31 1 7.4370 3.8886 5.1442 32 1 8.3380 2.3535 5.1441 33 1 10.3832 3.5532 4.4198 34 1 9.4828 5.0886 4.4198 35 1 11.9959 5.5309 8.3695 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801460549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:43 Heat of formation + Delta-G solvation = -96.212208 kcal Electronic energy + Delta-G solvation = -19178.629149 eV Core-core repulsion = 15758.775728 eV Total energy + Delta-G solvation = -3419.853422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.96992 -41.49356 -39.14877 -37.59931 -35.79095 -35.39410 -33.73625 -32.84155 -30.01705 -29.61074 -27.55770 -26.65686 -24.12350 -22.84395 -22.17278 -21.27733 -19.33422 -18.84922 -18.66765 -18.15930 -17.96371 -17.67578 -16.96166 -16.68418 -16.29755 -15.84682 -15.22728 -14.91993 -14.58744 -14.28555 -14.20943 -14.00655 -13.62295 -13.50630 -13.19587 -13.10673 -12.83866 -12.47682 -12.41638 -12.16877 -11.79931 -11.56044 -11.45416 -11.41263 -11.00361 -10.85784 -10.80210 -10.59342 -8.33442 -6.42319 0.24288 1.13588 1.14481 1.40064 1.42198 1.44685 1.55065 2.06033 2.35983 3.01437 3.01769 3.24103 3.48886 3.63858 3.99465 4.10261 4.15250 4.19094 4.23971 4.26636 4.32814 4.45362 4.58178 4.62360 4.67367 4.87156 4.88665 5.03205 5.21594 5.30135 5.49904 5.54632 5.84144 6.16023 6.64177 6.72527 7.21119 7.22776 8.82731 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.054497 B = 0.002559 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.666752 B =10940.761233 C =11190.222994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.003 3.997 3 C -0.207 4.207 4 C -0.042 4.042 5 C 0.142 3.858 6 O -0.401 6.401 7 C 0.083 3.917 8 C 0.449 3.551 9 O -0.541 6.541 10 O -0.353 6.353 11 C 0.094 3.906 12 C -0.002 4.002 13 C -0.545 4.545 14 H 0.032 0.968 15 C 0.008 3.992 16 N -0.946 5.946 17 Si 0.958 3.042 18 H -0.262 1.262 19 H -0.283 1.283 20 H -0.240 1.240 21 O 0.083 5.917 22 N -0.397 5.397 23 H 0.098 0.902 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.203 0.797 27 H 0.132 0.868 28 H 0.105 0.895 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.524 -4.503 -25.521 30.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.155 4.155 3 C -0.228 4.228 4 C -0.106 4.106 5 C 0.066 3.934 6 O -0.321 6.321 7 C 0.007 3.993 8 C 0.293 3.707 9 O -0.431 6.431 10 O -0.270 6.270 11 C 0.021 3.979 12 C -0.040 4.040 13 C -0.583 4.583 14 H 0.050 0.950 15 C -0.190 4.190 16 N -0.585 5.585 17 Si 0.780 3.220 18 H -0.187 1.187 19 H -0.209 1.209 20 H -0.163 1.163 21 O 0.019 5.981 22 N -0.105 5.105 23 H 0.116 0.884 24 H 0.091 0.909 25 H 0.120 0.880 26 H 0.220 0.780 27 H 0.149 0.851 28 H 0.123 0.877 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.924 -5.936 -24.945 30.183 hybrid contribution 0.427 0.866 0.644 1.160 sum -15.497 -5.070 -24.301 29.264 Atomic orbital electron populations 1.20339 0.83580 1.04722 1.04692 1.24336 1.00805 0.88719 1.01671 1.22949 0.90517 1.02419 1.06890 1.24554 0.98990 0.83314 1.03726 1.21049 0.89388 0.99727 0.83211 1.87974 1.39614 1.76903 1.27609 1.21935 0.88564 1.01501 0.87328 1.24277 0.78372 0.74175 0.93863 1.90684 1.50603 1.47638 1.54159 1.86416 1.41570 1.69003 1.30028 1.22956 0.98900 1.00267 0.75819 1.19468 0.92581 0.96644 0.95297 1.21136 1.08383 1.37343 0.91420 0.94999 1.26026 0.99742 0.95594 0.97596 1.70056 1.28600 1.43503 1.16387 0.85546 0.77160 0.79739 0.79553 1.18653 1.20855 1.16280 1.84776 1.21623 1.23952 1.67798 1.73863 0.89848 1.25723 1.21084 0.88380 0.90900 0.87992 0.78009 0.85062 0.87698 0.84806 0.84202 0.92559 0.92760 0.94293 0.94280 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.47 71.24 0.75 -0.11 16 2 C 0.00 0.05 7.33 43.58 0.32 0.37 16 3 C -0.21 -3.27 11.06 22.40 0.25 -3.02 16 4 C -0.04 -0.76 7.12 25.04 0.18 -0.58 16 5 C 0.14 1.58 6.50 71.24 0.46 2.04 16 6 O -0.40 -8.24 9.86 -129.90 -1.28 -9.53 16 7 C 0.08 1.36 6.53 71.24 0.47 1.82 16 8 C 0.45 13.79 8.03 71.24 0.57 14.37 16 9 O -0.54 -21.93 16.25 28.40 0.46 -21.47 16 10 O -0.35 -12.00 10.22 -51.37 -0.52 -12.52 16 11 C 0.09 3.95 5.40 71.98 0.39 4.34 16 12 C 0.00 -0.11 4.42 29.85 0.13 0.02 16 13 C -0.55 -31.33 9.66 25.60 0.25 -31.08 16 14 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 15 C 0.01 0.47 5.47 84.65 0.46 0.94 16 16 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 17 Si 0.96 42.42 27.47 68.60 1.88 44.30 16 18 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 21 O 0.08 1.99 11.20 71.71 0.80 2.79 16 22 N -0.40 -9.89 12.07 -49.56 -0.60 -10.49 16 23 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 27 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.14 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 2.44 8.13 -2.39 -0.02 2.43 16 32 H 0.05 2.38 8.13 -2.39 -0.02 2.36 16 33 H 0.04 1.72 7.20 -2.39 -0.02 1.71 16 34 H 0.04 1.70 7.57 -2.38 -0.02 1.68 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -80.93 316.16 6.30 -74.63 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: 1.04 Total: 1.55 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 4.22 Total: -10.91 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -0.30 Total: -68.85 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -0.54 Total: -40.72 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.88 Total: 44.30 kcal Total: -80.93 6.30 -74.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801460549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.584 kcal (2) G-P(sol) polarization free energy of solvation -80.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds